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Keywords = M1/M2 phenotypes

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20 pages, 9111 KB  
Article
Exploring the Mechanisms of Hydrangea macrophylla Adapting to Low Light-Induced Ornamental Whitening Through Physiological, Transcriptional, and Metabolomic Analyses
by Wenji Li, Long Guo, Chuanshuai Li and Yao Li
Genes 2026, 17(5), 545; https://doi.org/10.3390/genes17050545 (registering DOI) - 2 May 2026
Abstract
Background/Objectives: To explore the mechanisms of Hydrangea macrophylla adapting to low light-induced ornamental whitening, this study established treatments involving normal light (CK, 200 μmol·m−2·s−1), moderate low light (L1, 100 μmol·m−2·s−1), and severe low light (L2, [...] Read more.
Background/Objectives: To explore the mechanisms of Hydrangea macrophylla adapting to low light-induced ornamental whitening, this study established treatments involving normal light (CK, 200 μmol·m−2·s−1), moderate low light (L1, 100 μmol·m−2·s−1), and severe low light (L2, 20 μmol·m−2·s−1). Methods: Meanwhile, physiological indicators, including growth, photosynthesis, and antioxidant activity, were assessed, alongside transcriptomic and metabolomic analyses. Results: Results indicate that L1 increased the proportion of leaf whitening area while maintaining plant growth (crown width, biomass), photosynthetic efficiency comparable to CK, and superior to L2. Concurrently, L1 activated a coordinated antioxidant defence system, namely by increasing the activity of key enzymes (e.g., SOD, GR) and the accumulation of protective metabolites (e.g., soluble proteins, total phenolics and total flavonoids), thereby minimising oxidative damage (low MDA). Multi-omics analyses revealed that L1 specifically activated these networks associated with carbon assimilation, energy metabolism, secondary metabolite synthesis, and hormone signalling, indicating a systemic molecular mechanism towards enhanced defence. Conclusions: In summary, moderate low light triggers a synergistic molecular network involving enhanced antioxidant defences and secondary metabolism, enabling H. macrophylla to maintain overall physiological homeostasis and healthy growth while exhibiting ornamental whitening phenotypes, thereby revealing a unique aesthetic adaptation mechanism to environmental stress. Full article
(This article belongs to the Section Plant Genetics and Genomics)
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14 pages, 6723 KB  
Article
Genetic Characterization and Core Collection Development of Litchi chinensis var. fulvosus Using Leaf Phenotypic Traits and ISSR Markers
by Pengfei Wang, Xueren Cao, Hui Zhang, Huanling Li, Huiyun Zhang, Songgang Li, Jiwang Hong, Jian Zheng, Xinping Luo, Ziqin Yang, Lei Zhang and Jiabao Wang
Horticulturae 2026, 12(5), 556; https://doi.org/10.3390/horticulturae12050556 (registering DOI) - 2 May 2026
Abstract
Litchi chinensis var. fulvosus is an important wild litchi resource in Yunnan, China, valued for favorable agronomic traits such as early flowering, early ripening, multiple flowering cycles, and high fruit-setting ability. However, its genetic diversity and population structure remain poorly understood. In this [...] Read more.
Litchi chinensis var. fulvosus is an important wild litchi resource in Yunnan, China, valued for favorable agronomic traits such as early flowering, early ripening, multiple flowering cycles, and high fruit-setting ability. However, its genetic diversity and population structure remain poorly understood. In this study, 192 accessions were collected from ten counties in Yunnan Province to evaluate their geographic distribution, leaf phenotypic variation, molecular diversity, population structure, and core collection composition. Eight descriptive leaf traits, nine quantitative leaf traits, and ISSR genotyping data from seven primers were analyzed. The accessions were distributed across an altitudinal range of 169–1470 m, with clear habitat differentiation among trees of different ages. Morphological analysis revealed substantial leaf variation, with mean diversity indices of 1.19 for descriptive traits and 2.76 for quantitative traits. ISSR analysis generated 49 scorable bands, of which 34 were polymorphic, corresponding to a polymorphism rate of 68.45%. The mean Shannon–Wiener diversity index was 0.3101, indicating detectable but relatively limited molecular diversity. Integrated phenotypic and molecular analyses divided the germplasm into two subpopulations. A core collection comprising 30 accessions (about 15% of the initial population) showed the best balance between sampling efficiency and diversity retention. These results provide a practical basis for the conservation, evaluation, and efficient utilization of L. chinensis var. fulvosus genetic resources and will support breeding and genetic improvement of litchi. Full article
(This article belongs to the Special Issue Multi-Omics-Driven Breeding for Tropical Horticultural Crops)
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18 pages, 496 KB  
Article
Sex-Specific Misclassification of Obesity When Using Body Mass Index in Young Healthcare Professionals: A Large Cross-Sectional Study Using Multiple Adiposity Indices
by Alberto Ramírez Gallegos, Pedro Juan Tárraga López, Mónica Silu Piña Dabreu, Lluis Rodas Cañellas, Ángel Arturo López-González and José Ignacio Ramírez-Manent
Med. Sci. 2026, 14(2), 234; https://doi.org/10.3390/medsci14020234 - 1 May 2026
Abstract
Background: Body mass index (BMI) remains the standard tool for obesity screening; however, it does not account for body fat distribution or visceral adiposity, potentially leading to clinically relevant misclassification—particularly in young adults. Evidence on this issue in healthcare professionals is limited. [...] Read more.
Background: Body mass index (BMI) remains the standard tool for obesity screening; however, it does not account for body fat distribution or visceral adiposity, potentially leading to clinically relevant misclassification—particularly in young adults. Evidence on this issue in healthcare professionals is limited. Objective: To evaluate the extent of obesity misclassification when using BMI compared with alternative anthropometric and body composition indices, and to examine sex-specific associations between lifestyle factors and different adiposity phenotypes in young healthcare professionals. Methods: A large cross-sectional study was conducted in 12,874 medical residents, nursing residents, and age-matched controls (22–30 years). Obesity was defined using BMI (≥30 kg/m2), waist-to-height ratio (WtHR ≥ 0.5), Clínica Universidad de Navarra–Body Adiposity Estimator (CUN-BAE), body fat percentage, and bioimpedance-derived visceral fat. Multivariable logistic regression models adjusted for age, sex, professional group, smoking, physical activity, and Mediterranean diet adherence were fitted separately for each adiposity definition. Sex interaction terms were formally tested. Agreement between indices was assessed using Cohen’s kappa. Results: Obesity prevalence varied substantially according to the index applied and was consistently higher when central or visceral adiposity measures were used. Agreement between BMI and alternative indices was only fair to moderate, with the lowest concordance observed for visceral fat (κ = 0.29; 95% CI 0.26–0.32). Male sex was strongly associated with visceral fat-defined obesity (aOR 4.76; 95% CI 3.82–5.92), while effect sizes were attenuated for BMI-defined obesity (aOR 1.41; 95% CI 1.32–1.51). Significant sex interactions were detected for visceral adiposity, particularly for physical activity (p = 0.001) and smoking (p = 0.002), indicating differential lifestyle associations according to fat distribution phenotype. Conclusions: BMI substantially underestimates clinically relevant central and visceral adiposity in young healthcare professionals. Sex-specific differences were observed in the association between lifestyle behaviors and visceral fat. These findings highlight the limitations of relying exclusively on BMI for obesity screening. Incorporating waist-based or body composition-derived measures may improve early risk identification and support targeted preventive strategies. Full article
16 pages, 28163 KB  
Article
Extraction, Purification, and Characterization of a Bacteriocin from Marine Lactococcus lactis NAN6399: Evaluating Antioxidant and Antimicrobial Activities
by Fatma A. Ameen, Mahmoud E. Soliman, Amira M. Hamdan and Sherif F. Hammad
Microorganisms 2026, 14(5), 1030; https://doi.org/10.3390/microorganisms14051030 - 1 May 2026
Abstract
We evaluated the antimicrobial and antioxidant capabilities of a bacteriocin purified from a recently identified marine Lactococcus lactis (L. lactis) NAN6399 strain, a lactic acid bacterium recovered from Mediterranean coastal waters near Alexandria, Egypt, and identified by combined API 50 CHL [...] Read more.
We evaluated the antimicrobial and antioxidant capabilities of a bacteriocin purified from a recently identified marine Lactococcus lactis (L. lactis) NAN6399 strain, a lactic acid bacterium recovered from Mediterranean coastal waters near Alexandria, Egypt, and identified by combined API 50 CHL phenotypic profiling and 16S rRNA gene sequencing. Bacteriocin purification was achieved by sequential ammonium sulfate precipitation and reverse-phase high-performance liquid chromatography (RP-HPLC). The purified bioactive fraction had an approximate molecular weight of 20 kDa by SDS-PAGE and a 106-amino-acid N-terminal sequence that, upon BLAST alignment, returned 98.1% overall identity to the Lactococcin 972 family bacteriocin AAK06118.1 from L. lactis IL1403, with divergence confined exclusively to the terminal two C-terminal residues. This sequence is structurally and functionally distinct from canonical Lcn972 (L. lactis IPLA 972): the two peptides share an identical 25-residue signal peptide but diverge entirely in their mature bioactive domains, which exhibit only 9.1% sequence identity. Canonical Lcn972 operates through Lipid II-mediated septum disruption and inhibits only Lactococcus species; the NAN6399 peptide, correctly designated as a novel member of the Lcn972-like peptide family, demonstrated broad-spectrum antimicrobial efficacy against multiple indicator organisms (Staphylococcus aureus, Salmonella typhimurium, Escherichia coli, Klebsiella pneumoniae, Pseudomonas aeruginosa, and Enterococcus faecalis), producing inhibition zones of up to 30 mm and minimum inhibitory concentration (MIC) values as low as 1.25 μg/mL against S. aureus. Antioxidant capacity was assessed using the DPPH radical scavenging assay, with the purified preparation achieving 73.14 ± 0.34% inhibition. Collectively, these data establish L. lactis NAN6399 as the producer of a bifunctional Lcn972-family bacteriocin with both antimicrobial and antioxidant potential, provide the first experimental characterization of the antimicrobial activity of this Lcn972-family branch, and highlight marine LAB as a productive reservoir for novel bioactive peptide discovery. Full article
(This article belongs to the Section Microbial Biotechnology)
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25 pages, 2945 KB  
Article
Hnf1aos1 as a Metabolic Coordinator of Hepatic Lipid Homeostasis and Feedback Control
by Beshoy Armanios, Jing Jin, Ankit P. Laddha, Le Tra Giang Nguyen, Sherouk M. Tawfik, Neha Mishra, Jose E. Manautou and Xiao-Bo Zhong
Non-Coding RNA 2026, 12(3), 15; https://doi.org/10.3390/ncrna12030015 - 30 Apr 2026
Abstract
Background: Long noncoding RNAs (lncRNAs) have emerged as critical regulators of hepatic metabolism and disease progression. The hepatocyte nuclear factor 1 alpha antisense 1 (HNF1A-AS1) lncRNA modulates liver-specific transcription factors; however, its physiological role in diet-dependent lipid homeostasis remains poorly defined. Methods: In [...] Read more.
Background: Long noncoding RNAs (lncRNAs) have emerged as critical regulators of hepatic metabolism and disease progression. The hepatocyte nuclear factor 1 alpha antisense 1 (HNF1A-AS1) lncRNA modulates liver-specific transcription factors; however, its physiological role in diet-dependent lipid homeostasis remains poorly defined. Methods: In this study, we investigated the mouse ortholog, Hnf1a opposite strand 1 (Hnf1aos1), using AAV-mediated knockdown in C57BL/6J mice fed either a chow diet (10% kcal from fat) or a high-fat diet (HFD; 60% kcal from fat) for 12 weeks. Metabolic phenotyping included hepatic lipid quantification, histological analysis, serum biochemistry, and quantitative gene expression profiling. Results: Loss of Hnf1aos1 produced distinct, diet-dependent alterations in hepatic lipid handling. Under chow conditions, knockdown mice exhibited selective hepatic cholesterol accumulation (6.10 ± 2.9 mg/g tissue vs. 3.51 ± 1.1 mg/g in controls), accompanied by dysregulation of cholesterol clearance pathways. In contrast, under HFD conditions, knockdown precipitated severe macrovesicular degeneration, with hepatic triglyceride levels approximately doubled relative to HFD-fed controls (51.72 ± 19.8 mg/g vs. 26.34 ± 11.9 mg/g) and a numerically elevated triglyceride-to-cholesterol ratio (TG:TC ≈ 6.1:1; p = 0.0621, trend). Chow/Kd mice gained significantly less weight than chow-fed controls, whereas HFD/Kd mice exhibited weight gain comparable to HFD controls despite severe hepatic steatosis. This paradoxical phenotype suggests impaired metabolic feedback at the post-transcriptional level, in which compensatory upregulation of Hnf1a mRNA is insufficient to suppress lipid-associated genes such as Cd36, despite profound lipid overload; however, HNF1A protein levels were not directly measured in this study. Conclusion: Collectively, these findings identify Hnf1aos1 as a regulator of hepatic lipid homeostasis whose loss produces a phenotype consistent with inappropriate lipid accumulation during nutrient excess, without defining the underlying molecular mechanism. Our results support a role for Hnf1aos1 in shaping hepatic metabolic plasticity and provide insight into lncRNA-associated MASLD phenotypes. Full article
20 pages, 30829 KB  
Article
Crop-IRM: An Intelligent Recognition and Management System for Organ Characteristics of Crop Germplasm Resources
by Jie Zhang, Chenyao Yang, Hailin Peng, Xintong Wei, Jiaqi Zou, Shiyu Wang, Zhaohong Lu, Xianming Tan and Feng Yang
Agriculture 2026, 16(9), 996; https://doi.org/10.3390/agriculture16090996 - 30 Apr 2026
Abstract
The traditional methods of field-based phenotypic data collection for crop germplasm resources are often inefficient and highly subjective. As the foundation for breeding innovation, these resources require precise identification of phenotypic traits for effective evaluation and utilization. Therefore, efficient and standardized management of [...] Read more.
The traditional methods of field-based phenotypic data collection for crop germplasm resources are often inefficient and highly subjective. As the foundation for breeding innovation, these resources require precise identification of phenotypic traits for effective evaluation and utilization. Therefore, efficient and standardized management of germplasm data is critical during the breeding process. To address this, we have developed an intelligent recognition and management system focused on the crop’s organ characteristics. The system consists of a web client for overall project management and data download, and a WeChat Mini Program for data collection and uploading. Both components are integrated with image analysis models. Using a soybean variety screening experiment as a case study, we have constructed multiple high-definition datasets for soybean phenotypic traits, and employed YOLOv11 series models for object detection, image classification, instance segmentation, and pose estimation to build analytical models for each of these traits. All models achieved a mean average precision (mAP@0.5) exceeding 94%, along with a top1_accuracy of 0.999. In practical evaluations, all models took between 0.71 and 3.03 s to make predictions for 100 images, achieving an accuracy rate of over 98%. This system delivers a comprehensive solution for field phenotypic identification of crop germplasm resources, substantially enhancing the efficiency and objectivity of data collection and analysis. It serves as a valuable decision-support tool for precision breeding and digital agriculture. Full article
(This article belongs to the Section Artificial Intelligence and Digital Agriculture)
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10 pages, 504 KB  
Article
Association of Plasma IL-6 with Indoor Radon Exposure in Children with Non-Allergic Asthma
by Saleh Alsulami, Youn Soo Jung, Kari Nadeau, Perdita Permaul, Longxiang Li, Petros Koutrakis, Jonathan M. Gaffin, Wanda Phipatanakul and Tina M. Banzon
J. Pers. Med. 2026, 16(5), 245; https://doi.org/10.3390/jpm16050245 - 30 Apr 2026
Abstract
Background/Objectives: Radon exposure has recently been associated with asthma morbidity, including increased airway inflammation and school absenteeism in children, though limited data on underlying biological mechanisms exist. Interleukin-6 (IL-6), a pleiotropic cytokine implicated in both Type 2-low airway inflammation and radon-related lung carcinogenesis, [...] Read more.
Background/Objectives: Radon exposure has recently been associated with asthma morbidity, including increased airway inflammation and school absenteeism in children, though limited data on underlying biological mechanisms exist. Interleukin-6 (IL-6), a pleiotropic cytokine implicated in both Type 2-low airway inflammation and radon-related lung carcinogenesis, may represent a key mechanistic link between radon exposure and asthma morbidity. We aimed to evaluate the association between indoor radon exposure and plasma IL-6 levels in children with asthma and whether this relationship differs by allergic sensitization status. Methods: We analyzed baseline data from the School Inner-City Asthma Study, a prospective cohort of children aged 4–13 years with persistent asthma. Monthly indoor radon concentrations at each participant’s residential ZIP Code Tabulation Area were estimated using a validated spatiotemporal prediction model. Plasma IL-6 was measured from baseline blood samples. Multivariable linear mixed-effects models with random intercepts for school were used to assess the association between radon exposure and IL-6, adjusting for demographic, clinical, and socioeconomic covariates. Effect modification by allergic sensitization was evaluated using an interaction term. Results: Among 144 participants, 62.5% were allergen-sensitized. The median home radon concentration was 46.6 Bq/m3 (range 30.7–99.9), and the mean plasma IL-6 was 0.22 pg/mL (SD 0.41). A significant interaction was observed between radon exposure and allergic sensitization status (β-interaction = –0.012; p = 0.014), indicating differential effects by phenotype. Among non-sensitized children, higher radon exposure was associated with increased IL-6 levels (β = 0.0088; p = 0.044), corresponding to a 0.32 pg/mL rise in IL-6 per 37 Bq/m3 increase in radon. No significant association was observed among sensitized children. Conclusions: Indoor radon exposure is associated with higher plasma IL-6 levels in non-sensitized children with asthma, suggesting a potential IL-6–mediated pathway linking radon exposure to asthma morbidity in the Type 2-low phenotype. These findings highlight heterogeneity in environmental asthma responses and support further investigation into radon mitigation as a modifiable factor to improve asthma outcomes. IL-6 may serve as a biomarker to identify children most susceptible to radon-related airway inflammation, guiding personalized mitigation strategies and targeted interventions to improve asthma outcomes. Future studies should incorporate direct home radon measurements, comprehensive endotyping panels, and longitudinal biomarker sampling to validate these findings and elucidate whether IL-6 trans-signaling pathways mediate radon-induced airway injury in non-allergic asthma. Full article
(This article belongs to the Special Issue Mechanisms of Airway Inflammation in Asthma)
21 pages, 813 KB  
Article
Alcohol and Cannabinoids Differentially Regulate Macrophage Polarization, with Co-Exposure Producing an Antagonistic Immunomodulatory Effect
by Esther Penina Shake, Gianelly Vargas Santos and Vijay Sivaraman
Int. J. Mol. Sci. 2026, 27(9), 4054; https://doi.org/10.3390/ijms27094054 - 30 Apr 2026
Abstract
Concurrent alcohol and cannabis use (“crossfading”) is increasingly prevalent, especially among adolescents, yet its toxicological impact on pulmonary innate immunity remains largely unexplored. Alveolar macrophages (AMs) orchestrate inflammatory responses in the lung, and dysregulated macrophage polarization is a hallmark of alcohol-associated lung disease. [...] Read more.
Concurrent alcohol and cannabis use (“crossfading”) is increasingly prevalent, especially among adolescents, yet its toxicological impact on pulmonary innate immunity remains largely unexplored. Alveolar macrophages (AMs) orchestrate inflammatory responses in the lung, and dysregulated macrophage polarization is a hallmark of alcohol-associated lung disease. Although alcohol and cannabinoids individually modulate immune function, the mechanisms by which their co-exposure alters macrophage activation and inflammatory signaling in the lung are largely unknown. AMs are highly sensitive to xenobiotic exposure and play a central role in regulating inflammatory and cytotoxic responses. In this study, we investigated how acute ethanol exposure, synthetic cannabinoid exposure, and their combined exposure affect macrophage viability, polarization, and the release of inflammatory mediators via cannabinoid receptor (CB1R/CB2R)-dependent pathways. Human THP-1-derived macrophages and KG-1 macrophage-like cells were exposed to ethanol, the CB1/CB2 agonist WIN 55,212-2, or both, with selective pharmacological antagonism of CB1R and CB2R. Ethanol exposure activated and polarized macrophages toward a pro-inflammatory M1 phenotype, accompanied by increased secretion of pro-inflammatory cytokines MCP-1, TGF-α, IFN-β, IL-6, and TNF-α. In contrast, WIN 55,212-2 promoted anti-inflammatory M2 polarization and increased IL-10 and IL-4 production. Notably, co-exposure to ethanol and WIN produced an antagonistic immunomodulatory response, characterized by the suppression of ethanol-induced M1 polarization and attenuation of pro-inflammatory cytokine release. Mechanistically, pharmacological CB1R blockade reduced ethanol-induced M1 polarization and cytokine secretion, whereas CB2R blockade exacerbated these effects, underscoring divergent roles for cannabinoid receptors in regulating pulmonary macrophage responses. This study provides novel findings demonstrating the mechanism by which alcohol–cannabinoid co-use reshapes macrophage immune phenotypes and identifies the endocannabinoid system as a potential therapeutic target for alcohol-related inflammatory lung disease. Full article
(This article belongs to the Special Issue Molecular Research on Cannabinoids and Cannabinoid Receptors)
16 pages, 811 KB  
Article
Engineered Phage Modulates Quorum Sensing and Biofilm Formation in Pseudomonas aeruginosa
by Domenico Franco, Salvatore Papasergi, Francesco Mediati, Salvatore P. P. Guglielmino and Laura Maria De Plano
Microorganisms 2026, 14(5), 1028; https://doi.org/10.3390/microorganisms14051028 - 30 Apr 2026
Abstract
Pseudomonas aeruginosa is an opportunistic Gram-negative pathogen frequently associated with chronic and biofilm-related infections, largely driven by quorum sensing (QS)-related genes/phenotypes. In this study, we investigated the antivirulence activity of an engineered M13-derived phage-display particle (P9b), selected for specific binding to P. aeruginosa, [...] Read more.
Pseudomonas aeruginosa is an opportunistic Gram-negative pathogen frequently associated with chronic and biofilm-related infections, largely driven by quorum sensing (QS)-related genes/phenotypes. In this study, we investigated the antivirulence activity of an engineered M13-derived phage-display particle (P9b), selected for specific binding to P. aeruginosa, which acts as a non-lytic modulator of QS through specific binding to a bacterial surface target. P9b induced a transient delay in early planktonic growth, without affecting long-term proliferation. In contrast, P9b significantly reduced biofilm-associated metabolic activity and pyocyanin production, consistent with an effect on QS-regulated pathways. Transcriptional analysis revealed significant downregulation of key QS regulators (lasI, lasR, rhlI, and rhlR) and modulation of phenazine biosynthesis genes (phzM downregulation and phzS upregulation), suggesting interference with QS-dependent regulatory circuits. Notably, P9b retained binding capacity and antibiofilm activity across clinically relevant P. aeruginosa isolates. Overall, these findings indicate that P9b acts as a selective, non-lytic modulator of virulence-associated traits, attenuating QS-regulated phenotypes without bactericidal effects. This study supports the potential of engineered filamentous phages as targeted antivirulence platforms for the development of innovative strategies against persistent and biofilm-associated infections. Full article
(This article belongs to the Special Issue Bacterial Pathogens: Biofilm Formation and Eradication)
16 pages, 2757 KB  
Review
Molecular Diversity and Functional Implications of Mammalian Choline Acetyltransferases in Neuronal and Non-Neuronal Cells
by Desislava Marinova and Stefan Trifonov
Int. J. Mol. Sci. 2026, 27(9), 4034; https://doi.org/10.3390/ijms27094034 - 30 Apr 2026
Abstract
Acetylcholine (ACh) is the first identified neurotransmitter and an evolutionarily conserved signaling molecule. Although its role in classical synaptic transmission within the central and peripheral nervous systems has been extensively studied, growing evidence indicates that cholinergic signaling extends beyond neuronal synapses and operates [...] Read more.
Acetylcholine (ACh) is the first identified neurotransmitter and an evolutionarily conserved signaling molecule. Although its role in classical synaptic transmission within the central and peripheral nervous systems has been extensively studied, growing evidence indicates that cholinergic signaling extends beyond neuronal synapses and operates in a broad range of non-neuronal cells. Thus, the cholinergic system represents a complex and widely distributed signaling network with both neuronal and non-neuronal components. Within the nervous system, cholinergic neurons display marked molecular heterogeneity, largely driven by the genomic organization and alternative splicing of the choline acetyltransferase (ChAT) gene. Distinct ChAT mRNA splice variants contribute to region- and cell-type specific cholinergic phenotypes in central and peripheral neurons, including the enteric nervous system, which exemplifies a highly autonomous peripheral cholinergic network. Beyond the nervous system, non-neuronal cholinergic signaling has been identified in epithelial, cardiac, immune, and other cell types, where ACh acts as an autocrine and paracrine regulator of key physiological processes. This review summarizes current knowledge on ACh biosynthesis, focusing on ChAT and its splice variants as molecular determinants of cholinergic diversity and function across neuronal and non-neuronal contexts. Full article
13 pages, 954 KB  
Article
Pathogenicity Analysis and Molecular Characterization of Three Avr Genes in Magnaporthe oryzae Population from Central Jilin Province
by Yimeng Wang, Nuozhou Zhang, Rui Han, Aozheng Lu, Nan Nan, Dayong Li and Wenxian Sun
Microorganisms 2026, 14(5), 1017; https://doi.org/10.3390/microorganisms14051017 - 30 Apr 2026
Abstract
Rice fungal blast, one of the most devastating diseases caused by Magnaporthe oryzae, poses a severe threat to global rice production. For the breeding and deployment of rice varieties with blast resistance, it is critical to elucidate the frequencies and genetic variations [...] Read more.
Rice fungal blast, one of the most devastating diseases caused by Magnaporthe oryzae, poses a severe threat to global rice production. For the breeding and deployment of rice varieties with blast resistance, it is critical to elucidate the frequencies and genetic variations in avirulence genes among M. oryzae populations. In this study, a total of 294 M. oryzae isolates were collected in 2022 from central Jilin Province, China. Pathogenicity assays on 24 monogenic rice lines revealed extensive virulence variations among the 294 isolates, with highly pathogenic strains being dominant and clear geographic differences in pathogenicity profiles. Resistance frequencies differed markedly among 24 monogenic lines, with Pi3, Pit, Pi7, Pikh, Pik, and Pia showing resistance rates over 50% and Pish exhibiting the lowest efficacy. Moreover, resistance profiles varied significantly across four sampling regions in central Jilin Province, with Pit being the most effective in Changchun and Jilin, Pi3 in Tonghua, and Pikm in Liaoyuan. In addition, the Avr genotypes of the isolates were postulated based on phenotypic data from the monogenic rice lines. Among the postulated Avr genotypes, the frequencies of Avr-Pi11 and Avr-Pish were the lowest at 29.25%. Furthermore, molecular characterization of three Avr genes (Avr-Pi9, Avr-Pita2, and Avr-Pizt) was performed by sequencing a subsample of 50 randomly selected isolates. Natural mutation sites were identified in Avr-Pita2 and Avr-Pizt, which were located within the coding sequence regions, leading to non-synonymous mutations and nonsense mutations that cause premature termination. Notably, no mutation was detected within the coding sequences of Avr-Pi9. Collectively, the findings provide a theoretical basis for breeding blast-resistant rice varieties that can be deployed in central Jilin Province, China. Full article
(This article belongs to the Special Issue Advances in Fungal Plant Pathogens: Diagnosis, Resistance and Control)
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18 pages, 4309 KB  
Article
Jacalin-Related Lectin OsJacLK1 Positively Regulates Resistance to Magnaporthe oryzae in Rice
by Bingwei Chen, Ruixue Li, Meiling Lai, Haoming Li, Zhongyuan Lin, Sarah Violet Michael, Wenbo Zhu, Jianbo Huang, Songbiao Chen and Yijuan Han
Plants 2026, 15(9), 1376; https://doi.org/10.3390/plants15091376 - 30 Apr 2026
Abstract
Jacalin-related lectins play crucial roles in plant adaptation to abiotic and biotic stresses. The rice genome encodes four putative jacalin-related lectin kinase genes (OsJacLKs), but their functions toward environmental stresses remain largely uncharacterized. This study demonstrates that a putative jacalin-related lectin [...] Read more.
Jacalin-related lectins play crucial roles in plant adaptation to abiotic and biotic stresses. The rice genome encodes four putative jacalin-related lectin kinase genes (OsJacLKs), but their functions toward environmental stresses remain largely uncharacterized. This study demonstrates that a putative jacalin-related lectin kinase, OsJacLK1, conferred resistance to the rice blast fungus Magnaporthe oryzae rather than salt stress. OsJacLK1 protein exhibited agglutination activities and affinity toward chitin, fungal cell wall, and mannose. OsJacLK1 was transcriptionally activated by stress-related phytohormones salicylic acid (SA), methyl jasmonate (MeJA), abscisic acid (ABA), and indoleacetic acid (IAA), as well as salinity, chitin, and M. oryzae inoculation, suggesting its involvement in broad stress-responsive signaling pathways. Overexpression of OsJacLK1 in rice led to reduced susceptibility to rice blast disease, whereas loss-of-function osjaclk1 lines showed no significant phenotypic difference from wild-type plants upon infection. Enhanced resistance in OsJacLK1-overexpressing lines was associated with a stronger reactive oxygen species (ROS) burst and elevated hydrogen peroxide accumulation, accompanied by the up-regulation of defense-related genes (OsRac1, OsSGT1, OsMAPK6, OsPAL1, OsNAC4, OsPBZ1, OsAOS2, and OsJAZ8). Collectively, our findings establish that OsJacLK1 acts as a positive regulator of rice immunity against M. oryzae, modulating the cellular redox state, highlighting its potential as a candidate for genetic improvement of disease resistance in rice. Full article
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17 pages, 9499 KB  
Article
Genome-Based Analysis of Chromosomal Colistin Non-Susceptibility in Stenotrophomonas pavanii Isolated from the Phycosphere of Pectinodesmus pectinatus
by Heejin Ahn, Hyunwoo Zin, Muhammad Akmal and Tae-Jin Choi
Antibiotics 2026, 15(5), 451; https://doi.org/10.3390/antibiotics15050451 - 30 Apr 2026
Abstract
Background/Objectives: Freshwater microalgae–bacteria consortia are increasingly utilized in wastewater treatment and biomass production. However, bacteria associated with the algal phycosphere may act as environmental reservoirs of multidrug-resistant (MDR) phenotypes and antibiotic resistance genes (ARGs), including resistance to last-resort antibiotics such as colistin. Methods: [...] Read more.
Background/Objectives: Freshwater microalgae–bacteria consortia are increasingly utilized in wastewater treatment and biomass production. However, bacteria associated with the algal phycosphere may act as environmental reservoirs of multidrug-resistant (MDR) phenotypes and antibiotic resistance genes (ARGs), including resistance to last-resort antibiotics such as colistin. Methods: An axenic culture of the freshwater microalga Pectinodesmus pectinatus was established using a NaClO-based cleaning protocol. Three phycosphere-associated bacterial strains (Chryseobacterium sp., Pseudomonas monteilii, and Stenotrophomonas pavanii) were isolated and identified by 16S rRNA gene analysis. Antimicrobial susceptibility testing was performed using broth microdilution against 16 antibiotics. Whole-genome sequencing of the most resistant isolate, S. pavanii, was conducted using Oxford Nanopore technology, followed by genome annotation and in silico resistome analysis using CARD, AMRFinderPlus, and ResFinder. Results: Among the three isolates, S. pavanii exhibited the broadest resistance profile, including high minimum inhibitory concentrations (MICs) to multiple β-lactams and colistin (MIC ≥ 16 μg/mL). No plasmid-borne mcr genes were detected. Instead, the genome encoded multiple chromosomal determinants potentially associated with polymyxin non-susceptibility, including lipid A and lipopolysaccharide modification pathways (e.g., arn genes and eptA), outer-membrane maintenance and LPS transport systems, multidrug efflux pumps, and regulatory elements. Integration of genomic and phenotypic data suggested that the observed colistin non-susceptibility may be associated with intrinsic chromosomal determinants inferred from whole-genome analysis. Conclusions: This study demonstrates that the P. pectinatus phycosphere can harbor multidrug-resistant (MDR) bacteria, including strains exhibiting colistin non-susceptibility potentially associated with a repertoire of intrinsic chromosomal resistance mechanisms inferred from genomic analysis. Therefore, freshwater microalgae-based systems should be considered potential environmental reservoirs contributing to the dissemination of antimicrobial resistance. Full article
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14 pages, 4667 KB  
Article
QTL Mapping of SPAD Values Associated with Leaf Color in Bunching Onion
by Tetsuya Nakajima, Kouei Fujii, Kenji Watanabe, Yoichi Mizukami, Masaru Bamba, Shusei Sato and Masayoshi Shigyo
Genes 2026, 17(5), 534; https://doi.org/10.3390/genes17050534 - 30 Apr 2026
Abstract
Background/Objectives: The dark green leaf color trait in bunching onion (Allium fistulosum L.) is an important agronomic trait closely associated with market value; however, its genetic basis remains poorly understood. This study aimed to identify quantitative trait loci (QTLs) associated with [...] Read more.
Background/Objectives: The dark green leaf color trait in bunching onion (Allium fistulosum L.) is an important agronomic trait closely associated with market value; however, its genetic basis remains poorly understood. This study aimed to identify quantitative trait loci (QTLs) associated with leaf color using SPAD values as a phenotypic indicator. Methods: An F2 population derived from a cross between the dark green line YSG1go and the light green line Asagikei-KUJYO was used. A linkage map was constructed based on RNA-seq-derived SNP markers, and SPAD values were measured for QTL analysis. Results: The linkage map consisted of eight linkage groups with a total length of 2103.0 cM and 765 mapped markers. SPAD values showed significant differences between the parental lines, with high broad-sense heritability (H2 = 0.76), indicating a strong genetic contribution to this trait. Multiple significant QTLs were detected on chromosomes 4 and 5, each explaining 27.4–38.1% of the phenotypic variance. The direction of allelic effects differed among QTLs, suggesting that favorable alleles are distributed between the parental lines. In addition, genes related to chloroplast protein translation were identified within the QTL regions. Conclusions: SPAD values are a suitable indicator for genetic analysis of leaf color in bunching onion, and the QTLs identified in this study provide valuable information for molecular breeding aimed at improving dark green leaf color. Full article
(This article belongs to the Special Issue Genetic and Breeding Improvement of Horticultural Crops)
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14 pages, 597 KB  
Article
Tc-99m DMSA Radiomics in CKD: Phenotype-Specific Cortical Signatures and a Morphological Predictor of Renal Function Decline
by Mustafa Demir, Nihat Köylüce, Davut Eren, Koray Uludağ, Hümeyra Gençer, Seyhan Karaçavuş and Fadime Demir
Diagnostics 2026, 16(9), 1351; https://doi.org/10.3390/diagnostics16091351 - 30 Apr 2026
Abstract
Purpose: This study aims to evaluate the ability of radiomic features obtained from technetium-99m dimercaptosuccinic acid (Tc-99m DMSA) planar images to distinguish renal cortical uptake patterns among patients with chronic kidney disease (CKD). We also assessed the association between selected radiomic features [...] Read more.
Purpose: This study aims to evaluate the ability of radiomic features obtained from technetium-99m dimercaptosuccinic acid (Tc-99m DMSA) planar images to distinguish renal cortical uptake patterns among patients with chronic kidney disease (CKD). We also assessed the association between selected radiomic features and progressive renal function loss during follow-up. Methods: The study included a total of 185 patients: patients with Diabetes mellitus (DM) + hypertension (HTN) diagnosis (Group 1, n = 30), patients with HTN diagnosis alone (Group 2, n = 86), and patients with no history of DM or HTN who were followed for CKD (Group 3, n = 69). Intergroup comparisons were performed using the Kruskal–Wallis test with Bonferroni-corrected post hoc pairwise testing; the proportion of significantly different features was assessed using FDR correction. As a secondary exploratory analysis, the relationship between selected radiomic features and time to first observed ≥20% eGFR decline at follow-up was evaluated using univariate L2-penalised Cox proportional hazards regression with feature selection guided by the events-per-variable principle and model discrimination quantified using Harrell’s C-index. Results: Intensity Kurtosis values showed a statistically significant difference among the groups: −0.11 (−0.31 to 0.12) for Group 1, −0.24 (−0.41 to −0.04) for Group 2, and −0.33 (−0.45 to −0.16) for Group 3 (p = 0.001). Mean Intensity values were found to be 60.66 (31.01–89.39) in Group 1 and 90.46 (72.87–106.34) in Group 3 (p < 0.001). Age, gender, and baseline eGFR did not differ between groups. Radiomic analysis revealed significant intergroup differences predominantly in intensity- and texture-based features, while morphological features showed more limited differentiation. In the secondary exploratory longitudinal analysis, Centre of Mass Shift was the only morphological feature significantly associated with time to first observed ≥20% eGFR decline at follow-up (HR per SD: 0.74; 95% CI: 0.58–0.94; p = 0.015; C-index: 0.57). Conclusions: Radiomic features from Tc-99m DMSA planar images reveal quantitative differences between clinically defined CKD subgroups even when cortical uptake appears visually indistinguishable. The threshold-specific association of Centre of Mass Shift with subsequent eGFR decline, beyond baseline renal function, suggests that DMSA radiomics may provide exploratory prognostic information that warrants prospective validation. Full article
(This article belongs to the Section Clinical Diagnosis and Prognosis)
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