Search Results (18)

Coral reefs off the coast of the Republic of Sudan are still considered to be among the most pristine reefs in the central Red Sea. The complex coastal fringing reefs, offshore banks, and shoals of Dungonab Bay in the north and Sanganeb atoll situated further to the south, about 23 km off the Sudanese mainland coast, were inscribed on the UNESCO World Heritage List in 2016. Due to their remote location and limited access, monitoring of the status of the reefs has been sporadic. Here, we present the results of a repeated large area photomosaic survey (5 m × 5 m plots) on the Sanganeb atoll, first established and surveyed in 1980, and revisited in 1991 and most recently in 2019. The 2019 survey recovered and reinstated the four original monitoring plots. Evaluation of photographic and video records from one photomosaic plot on the seaward slope of the atoll revealed general continuity of the overall community structure and composition over 39 years. Individual colonies of Echinopora gemmacea and Lobophyllia erythraea were recorded in the exact same positions as in the 1980 and 1991 plots. The genera Acropora and Pocillopora remain dominant, although in altered proportions. Shifts in composition were detected at the species level (e.g., increase in Pocillopora verrucosa, Stylophora pistillata, Acropora hemprichii, Dipsastraea pallida, and Echinopora gemmacea, decrease in Acropora cytherea and A. superba), in addition to changes in the extent of uncolonized substrate (e.g., increase from 43.9% in 1980 to 52.2% in 2019), and other scleractinian, hydrozoan, and soft coral living cover. While the temporal resolution only includes three sampling events over 39 years (1980, 1991, 2019), this study presents one of the longest time series of benthic community surveys available for the entire Red Sea. A semi-quantitative estimate of vertical reef growth in the studied test plot indicates a reduction in net accretion rates of more than 80%, from 2.27 to 2.72 cm/yr between 1980 and 1991 to 0.28–0.42 cm/yr between 1991 and 2019. We carefully conclude that the changes observed in the coral community in the plot in 2019 (Acropora–Pocillopora shift, increase in Montipora and calcareous algae) are representative of impacts at the community level, including rising sea surface temperatures and recent bleaching events. Full article

Iris pallida Lam., also known as Sweetie Iris, is a perennial ornamental and medicinal plant that produces a wide range of secondary metabolites. The Sweetie Iris was recently reported to have high allelopathic properties with the potential to be explored in sustainable weed management. This study aimed to identify and evaluate the contributions of compounds involved in the inhibitory effects of the rhizome of Sweetie Iris. High-performance liquid chromatography (HPLC) analysis was used to determine the content of β-ionone in the rhizome of Sweetie Iris. The phytotoxicity of β-ionone was evaluated on lettuce (Lactuca sativa L.) and other test plants. The content of β-ionone in the crude extract of Sweetie Iris rhizome was found to be 20.0 mg g⁻¹ by HPLC analysis. The phytotoxicity bioassay showed that β-ionone had strong inhibitory activity on the growth of lettuce (Lactuca sativa L.) and the other test plants, including Taraxacum officinale, Stellaria media, Eleusine indica, Amaranthus hybridus, Vicia villosa, and Brassica napus. At a concentration of 23.0 µg mL⁻¹, β-ionone inhibited the growth of all test plant species treated. Therefore, β-ionone is an active compound among the other allelopathic substances contained in the rhizome of Sweetie Iris. Full article

Bacterial endosymbionts, in genera Wolbachia and Cardinium, infect various arthropods and some nematode groups. Manipulating these microbial symbionts presents a promising biocontrol strategy for managing disease-causing parasites. However, the diversity of Wolbachia and Cardinium in nematodes remains unclear. This study employed a genome skimming strategy to uncover their occurrence in plant-parasitic nematodes, analyzing 52 populations of 12 species. A metagenome analysis revealed varying endosymbiont genome content, leading to the categorization of strong, weak, and no evidence for endosymbiont genomes. Strong evidence for Wolbachia was found in five populations, and for Cardinium in one population, suggesting a limited occurrence. Strong Wolbachia evidence was noted in Pratylenchus penetrans and Radopholus similis from North/South America and Africa. Heterodera glycines from North America showed strong Cardinium evidence. Weak genomic evidence for Wolbachia was observed in Globodera pallida, Meloidogyne incognita, Rotylenchus reniformis, Pratylechus coffeae, Pratylenchus neglectus, and Pratylenchus thornei; for Cardinium was found in G. pallida, R. reniformis and P. neglectus; 27/52 populations exhibited no endosymbiont evidence. Wolbachia and Cardinium presence varied within nematode species, suggesting non-obligate mutualism. Wolbachia and Cardinium genomes differed among nematode species, indicating potential species-specific functionality. This study advances knowledge of plant-parasitic nematode–bacteria symbiosis, providing insights for downstream eco-friendly biocontrol strategies. Full article

Cyst nematodes are plant parasitic nematodes infecting crops, causing extensive crop damage and annual losses, and affecting food production. The precise species identification is significant to initiate their control. The repeatable, less expensive, and less laborious distinguishing cyst nematode species using image processing and artificial intelligence can be advantageous. The objective of this study was to distinguish cyst nematodes belonging to the species Globodera pallida, Globodera rostochiensis, and Heterodera schachtii based on image parameters using artificial neural networks (ANN). The application of parameters selected from a set of 2172 textures of images in color channels L, a, b, X, Y, Z, R, G, B, V, U, and S to build classification models using a narrow neural network, medium neural network, wide neural network, trilayered neural network, WiSARD, multilayer perceptron, and RBF network is a great novelty of the present study. Algorithms allowed for distinguishing cyst nematode species with an average accuracy reaching 89.67% for a model developed using WiSARD. The highest correctness was obtained for H. schachtii and this species was distinguished from each other with the highest accuracy of 95–98% depending on the classifier. Whereas the highest number of misclassified cases occurred between G. pallida, G. rostochiensis belonging to the same genus Globodera. The developed procedure involving image parameters and artificial neural networks can be useful for non-destructive and objective distinguishing cyst nematode species. Full article

High population densities of the potato cyst nematodes (PCN) Globodera pallida and G. rostochiensis cause substantial yield losses to potato production (Solanum tuberosum) due to the delay caused to tuber formation by the retardation of plant growth. It requires meticulous estimation of the population densities by using soil sampling and applying the right combination of nematode management to deal with the PCN problem. This study aims to assess the use of an unmanned vehicle (UAV) in detecting and estimating the effect of ranges of densities of a PCN, G. pallida, on four cultivated potato cultivars with resistance to PCN in a naturally infested potato field in The Netherlands. First, the initial population density (Pi) of G. pallida was estimated by using an intensive sampling method of collecting about 1.5 kg of soil per m² from the center of each 3 × 5 m plot. At harvest, the fresh tuber yield of the potato cultivars (Avarna, Fontane, Sarion, and Serresta) were assessed. The Seinhorst yield loss model was used to investigate the relationship between Pi and fresh tuber yield. Secondly, the spatial data of UAV with optical and thermal sensors were analyzed to find any relationship between Pi and UAV indices. By using the classical yield loss model, all four cultivars were found to be affected by Pi with a relative minimum fresh tuber yield m, which ranged from 0.26 to 0.40. The maximum fresh tuber yield varied from 49.48 to 80.36 tons (ha)⁻¹. The density at which the fresh tuber yield started to deteriorate was in the range of 0.62–2.16 eggs (g dry soil)⁻¹. A regression was observed between Pi, and all UAV indices in a similar pattern to that of the fresh tuber yield by using the Seinhorst yield loss model, except for the cultivar Avarna for the two UAV indices (NDRE and NDVI). Unlike the tolerance limit, the relative minimum values of the UAV indices—except the chlorophyll index—differ when compared among each other and when compared with that of the fresh tuber yield within the same cultivar. This indicates that all indices can be useful for detection and decision making for statutory purposes but not for estimating damage (except the chlorophyll index). Full article

The potato cyst nematode (PCN), Globodera pallida, has acquired significant importance throughout Europe due to its widespread prevalence and negative effects on potato production. Thus, rapid and reliable diagnosis of PCN is critical during surveillance programs and for the implementation of control measures. The development of innovative technologies to overcome the limitations of current methodologies in achieving early detection is needed. Lab-on-a-chip devices can swiftly and accurately detect the presence of certain nucleotide sequences with high sensitivity and convert the presence of biological components into an understandable electrical signal by combining biosensors with microfluidics-based biochemical analysis. In this study, a specific DNA-probe sequence and PCR primers were designed to be used in a magnetoresistive biosensing platform to amplify the internal transcribed spacer region of the ribosomal DNA of G. pallida. Magnetic nanoparticles were used as the labelling agents of asymmetric PCR product through biotin–streptavidin interaction. Upon target hybridization to sensor immobilized oligo probes, the fringe field created by the magnetic nanoparticles produces a variation in the sensor’s electrical resistance. The detection signal corresponds to the concentration of target molecules present in the sample. The results demonstrate the suitability of the magnetic biosensor to detect PCR target product and the specificity of the probe, which consistently distinguishes G. pallida (DV/V > 1%) from other cyst nematodes (DV/V < 1%), even when DNA mixtures were tested at different concentrations. This shows the magnetic biosensor’s potential as a bioanalytical device for field applications and border phytosanitary inspections. Full article

The potato originated in southern Peru and north-western Bolivia (South America). However, native accessions have also been cultivated in India for many years. Late blight, caused by the fungus Phytophthora infestans, is the most devastating potato disease, while potato cyst nematode (Globodera spp.) (PCN) is another economically significant quarantine-requiring pest in India. In this study, we have generated a new Indian native collection of 94 potato accessions collected from different parts India. These accessions were screened against late blight and potato cyst nematode resistance by using gene-based molecular markers and phenotypic screening methods. Marker assisted selection using R1 gene-specific marker CosA₂₁₀ revealed a late blight resistance gene in 11 accessions. PCN resistance bands were found in 3 accessions with marker TG689₁₄₁, 5 accessions with marker 57R₄₅₂, and 1 accession having Gro1-4-1₆₀₂ marker for G. rostochiensis (Ro1,4), while 64 accessions amplified marker HC₂₇₆ indicating G. pallida (Pa2,3) resistance gene (GpaV_vrn QTL). On the other hand, phenotypic screening against late blight resistance under natural epiphytic conditions (hot-spot) revealed three accessions with high resistance, while others were resistant (1 accession), moderately resistant (5 accessions), susceptible (29 accessions), and highly susceptible (56 accessions). For G. rostochiensis (golden cyst nematode) and G. pallida (white cyst nematode) resistance, accessions were grouped into highly resistant (3, 3), resistant (0, 2), moderately resistant (6, 29), susceptible (32, 30), and highly susceptible (53, 30), respectively, for the two PCN species. Collectively, we identified promising accessions with high resistance to late blight (JG-1, Kanpuria Safed, and Rangpuria), and also highly resistant to both Globodera species (Garlentic, Jeevan Jyoti, and JG-1). Our findings suggested that these accessions would be useful for late blight and PCN resistance breeding, as well as future molecular studies in potatoes. Full article

Globodera pallida, a potato cyst nematode (PCN), is a quarantine endoparasitic pest of potato (Solanum tuberosum) in the US due to its effects on yield and quality of potato tubers. A new rhabdovirus, named potato cyst nematode rhabdovirus (PcRV), was revealed and characterized in the G. pallida populations collected in Idaho through use of high-throughput sequencing (HTS) and RT-PCR and found to be most closely related to soybean cyst nematode rhabdovirus (ScRV). PcRV has a 13,604 bp long, single-stranded RNA genome encoding five open reading frames, including four rhabdovirus-specific genes, N, P, G, and L, and one unknown gene. PcRV was found present in eggs, invasive second-stage juveniles, and parasitic females of G. pallida, implying a vertical transmission mode. RT-PCR and partial sequencing of PcRV in laboratory-reared G. pallida populations maintained over five years suggested that the virus is highly persistent and genetically stable. Two other Globodera spp. reproducing on potato and reported in the US, G. rostochiensis and G. ellingtonae, tested negative for PcRV presence. To the best of our knowledge, PcRV is the first virus experimentally found infecting G. pallida. Based on their similar genome organizations, the phylogeny of their RNA-dependent RNA polymerase domains (L gene), and relatively high identity levels in their protein products, PcRV and ScRV are proposed to form a new genus, provisionally named “Gammanemrhavirus”, within the family Rhabdoviridae. Full article

Alzheimer’s disease (AD) is a progressive neurodegenerative disorder with unmet medical need. This investigation consisted of testing a range of ethanolic ethnomedicinal plant extracts (n = 18) traditionally used in the treatment of disorders such as anxiety, delirium, and memory loss. They were then screened for in vitro inhibitory activity against acetylcholinesterase (AChE), butylcholinesterase (BuChE), beta-secretase 1/beta-site amyloid precursor protein (APP) cleaving enzyme 1 (BACE1), and antioxidant activities. Plants with potent activities were further characterised using a recently developed in vivo model of AD, Globodera pallida. The ability of phytoextracts to protect this organism against amyloid-beta Aβ (1-42) exposure was assessed by measuring chemosensing, survival rate, production of reactive oxygen species (ROS), and antioxidant responses. Extracts (n = 5) from Juglans regia (leaves), Ellettaria cardamomum (seeds), Cinnamomum zeylanicum (bark), Salvia officinalis (leaves/flowers), and Hypericum perforatum (flowers) exerted concentration-dependent inhibitory activities against AChE and BuChE. Three of these plant extracts (i.e., J. regia, E. cardamomum, and S. officinalis) possessed strong concentration-dependent inhibitory activity against BACE1. Furthermore, the five selected medicinal plant extracts not only enhanced significantly (p < 0.05) the nematode’s chemosensing, survival rate, and antioxidant responses (i.e., anti-ROS production, mitochondrial reductase activity, oxidized glutathione (GSSG) to reduced glutathione (GSH) ratio), but also greatly restored (p < 0.05) in a concentration-dependent manner the Aβ (1-42)-induced deleterious changes in these same parameters. In brief, this investigation highlights plant extracts with strong anti-AD activities which could be trialled as novel therapeutic supplements or undergo further biodiscovery research. Full article

Potato is one of the most important food crops in the world and also in the Russian Federation. Among harmful organisms reducing potato yield potential, the potato cyst nematodes (PCN) are considered to be ones of the most damaging pests. Information on PCN resistant cultivars is important for potato breeding and production. Russian potato cultivars are characterized in the state-bio-test program for resistance to only one PCN species Globodera rostochiensis and one pathotype Ro1 which is reported to be present in the country. This study aimed to find domestic cultivars with multiple resistances to different PCN species and different pathotypes using phenotyping coupled with molecular marker analysis due to the risk of the occasional introduction of new pests. The phenotypic response was determined by the inoculation of plants with pathotypes Ro5 of G. rostochiensis and Pa3 of G. pallida. The obtained results were supplemented by the state-bio-test data on resistance to Ro1 of G. rostochiensis. Nine of 26 Russian cultivars were resistant both to Ro5 and Ro1 pathotypes and two cultivars possess multiple resistances to both PCN species. Most tested molecular markers associated with the Gpa2, GpaV_vrn, GpaV^s_spl, Grp1 loci showed discrepancies with phenotyping. However, a predictive haplotype and epistatic effect were detected. Full article

Background: Whole transgenic or non-transgenic organism model systems allow the screening of pharmacological compounds for protective actions in Alzheimer’s disease (AD). Aim: In this study, a plant parasitic nematode, Globodera pallida, which assimilates intact peptides from the external environment, was investigated as a new potential non-transgenic model system of AD. Methods: Fresh second-stage juveniles of G. pallida were used to measure their chemosensory, perform immunocytochemistry on their neurological structures, evaluate their survival rate, measure reactive oxygen species, and determine total oxidized glutathione to reduced glutathione ratio (GSSG/GSH) levels, before and after treatment with 100 µM of various amyloid beta (Aβ) peptides (1–40, 1–42, 17–42, 17–40, 1–28, or 1–16). Wild-type N2 C. elegans (strain N2) was cultured on Nematode Growth Medium and directly used, as control, for chemosensory assays. Results: We demonstrated that: (i) G. pallida (unlike Caenorhabditis elegans) assimilates amyloid-β (Aβ) peptides which co-localise with its neurological structures; (ii) pre-treatment with various Aβ isoforms (1–40, 1–42, 17–42, 17–40, 1–28, or 1–16) impairs G. pallida’s chemotaxis to differing extents; (iii) Aβ peptides reduced survival, increased the production of ROS, and increased GSSG/GSH levels in this model; (iv) this unique model can distinguish differences between different treatment concentrations, durations, and modalities, displaying good sensitivity; (v) clinically approved neuroprotective agents were effective in protecting G. pallida from Aβ (1–42) exposure. Taken together, the data indicate that G. pallida is an interesting in vivo model with strong potential for discovery of novel bioactive compounds with anti-AD activity. Full article

The potato cyst nematode (PCN) Globodera pallida has acquired significant importance throughout Europe due to its nefarious effects on potato production. Rapid and reliable diagnosis of PCN is critical during the surveillance programs and for the implementation of control measures. Molecular DNA-based methods are available, but they require expensive laboratory facilities, equipment and trained technicians. Moreover, there is an additional need of time for sample shipment and testing. In this work, we have developed a new and simple assay which reliably discriminates G. pallida from other cyst nematodes in less than 40 min. This assay may be applied either on cysts or juveniles with the ability to detect a single juvenile of G. pallida in a sample of at least 40 juveniles of the non-target species G. rostochiensis. This test should be a tool to improve the performance of the laboratory and has the potential to be performed on-site. Full article

Globodera pallida is among the most significant plant-parasitic nematodes worldwide, causing major damage to potato production. Since it was discovered in Idaho in 2006, eradication efforts have aimed to contain and eradicate G. pallida through phytosanitary action and soil fumigation. In this study, we investigated genome-wide patterns of G. pallida genetic variation across Idaho fields to evaluate whether the infestation resulted from a single or multiple introduction(s) and to investigate potential evolutionary responses since the time of infestation. A total of 53 G. pallida samples (~1,042,000 individuals) were collected and analyzed, representing five different fields in Idaho, a greenhouse population, and a field in Scotland that was used for external comparison. According to genome-wide allele frequency and fixation index (F_st) analyses, most of the genetic variation was shared among the G. pallida populations in Idaho fields pre-fumigation, indicating that the infestation likely resulted from a single introduction. Temporal patterns of genome-wide polymorphisms involving (1) pre-fumigation field samples collected in 2007 and 2014 and (2) pre- and post-fumigation samples revealed nucleotide variants (SNPs, single-nucleotide polymorphisms) with significantly differentiated allele frequencies indicating genetic differentiation. This study provides insights into the genetic origins and adaptive potential of G. pallida invading new environments. Full article

Morphological and molecular studies were conducted to characterize the specific identity of 36 isolates of potato cyst nematodes (PCNs) recovered from soil samples collected in several potato producing areas of Algeria. Morphometric data revealed that 44% of isolates contained Globodera pallida alone, 28% contained Globodera rostochiensis alone and 28% mixtures of the two species. Morphometric values of cysts and second-stage juveniles were generally distributed with slight differences in the expected ranges for both Globodera species. Inter- and intraspecific morphometric variability in nematode isolates was noted. Molecular analysis using conventional multiplex PCR with species-specific primers and TaqMan real-time PCR confirmed the morphological identification. In addition, the distribution of both potato cyst nematode species throughout various parts of the country was investigated. In the central areas, the isolates of G. pallida alone dominate, whereas isolates of G. rostochiensis alone are more frequent in the southern areas. In the eastern regions, mixed isolates are more representative. Most isolates examined in the western areas are mixtures of the two species or G. rostochiensis alone. Comparatively, G. pallida remains the most widely distributed species in its geographic range. This study confirms the presence of two PCN species, G. pallida and G. rostochiensis, in Algeria and provides additional information on their biogeographic distribution. Full article

The scope of this paper is limited to the taxonomy, detection, and reliable morphological and molecular identification of the potato cyst nematodes (PCN) Globodera pallida and G. rostochiensis. It describes the nomenclature, hosts, life cycle, pathotypes, and symptoms of the two species. It also provides detailed instructions for soil sampling and extraction of cysts from soil. The primary focus of the paper is the presentation of accurate and effective methods to identify the two principal PCN species. Full article