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13 pages, 2979 KB  
Review
Non-Ossifying Fibromas: A 2025 Review
by Kyle Walker, Jimmy B. Smith, Niket Todi, Danielle Brown and Robert L. Randall
J. Clin. Med. 2025, 14(18), 6428; https://doi.org/10.3390/jcm14186428 - 12 Sep 2025
Viewed by 2566
Abstract
In this comprehensive review, we explore the full spectrum of the most common incidentally found bone lesions in children and adolescents. Non-ossifying fibromas (NOFs) are benign, self-limiting bone lesions that represent a significant proportion of skeletal abnormalities in this population. Beginning with their [...] Read more.
In this comprehensive review, we explore the full spectrum of the most common incidentally found bone lesions in children and adolescents. Non-ossifying fibromas (NOFs) are benign, self-limiting bone lesions that represent a significant proportion of skeletal abnormalities in this population. Beginning with their first description by Sontag and Pyle and the subsequent histological characterization by Jaffe and Lichtenstein, we trace the historical evolution of understanding NOFs, including early theories on etiology, while outlining key epidemiologic, histopathologic, and advanced imaging findings. Furthermore, we discuss diagnostic criteria, management strategies, and emerging molecular insights for NOFs, emphasizing their clinical significance. By integrating historical perspectives, current diagnostic protocols, and emerging discoveries, this paper seeks to assist clinicians in optimizing diagnostic and treatment protocols to prevent unnecessary interventions through a comprehensive understanding of NOFs. Full article
(This article belongs to the Special Issue Recent Research Progress in Pediatric Orthopedic Surgery)
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16 pages, 551 KB  
Article
Replanting the Birthing Trees: A Call to Transform Intergenerational Trauma into Cycles of Healing and Nurturing
by Catherine Chamberlain, Jacynta Krakouer, Paul Gray, Madeleine Lyon, Shakira Onwuka, Ee Pin Chang, Lesley Nelson, Valda Duffield, Janine Mohamed, Shaydeen Stocker, Yalmay Yunupingu, Sally Maymuru, Bronwyn Rossingh, Fiona Stanley, Danielle Cameron, Marilyn Metta, Tess M. Bright, Renna Gayde, Bridgette Kelly, Tatiana Corrales, Roz Walker, Tamara Lacroix, Helen Milroy, Alison Weatherstone, Kimberley A. Jones, Kristen Smith and Marcia Langtonadd Show full author list remove Hide full author list
Genealogy 2025, 9(2), 52; https://doi.org/10.3390/genealogy9020052 - 6 May 2025
Cited by 2 | Viewed by 4404
Abstract
Aboriginal and Torres Strait Islander ways of knowing, being and doing have fostered physical, social, and emotional wellbeing for millenia, forming a foundation of strength and resilience. However, colonisation, systemic violence and discrimination—including the forced removal of Aboriginal and Torres Strait Islander children, [...] Read more.
Aboriginal and Torres Strait Islander ways of knowing, being and doing have fostered physical, social, and emotional wellbeing for millenia, forming a foundation of strength and resilience. However, colonisation, systemic violence and discrimination—including the forced removal of Aboriginal and Torres Strait Islander children, which continues today—have disrupted this foundation, leading to compounding cycles of intergenerational and complex trauma. The enduring impact of intergenerational and complex trauma is exemplified in increasing proportions of Aboriginal and Torres Strait Islander children being removed from their families and involved in the child protection and youth justice system—which represents a national crisis. Despite this crisis, the national response remains insufficient. To address these urgent issues, over 200 predominantly Aboriginal and Torres Strait Islander stakeholders, participated in Gathering the Seeds Symposium, the inaugural meeting for the Replanting the Birthing Trees project held in Perth in April 2023. This meeting marked the beginning of a public dialogue aimed at Closing the Gap by advancing community-led strategies to break cycles of trauma and foster cycles of nurturing, recovery, and wellbeing for Aboriginal and Torres Strait Islander parents and children across the first 2000 days. We outline critical shortcomings in the current child protection and youth justice systems, and the urgent need for child wellbeing reform. Importantly we highlight recommendations made in submissions in 2023 to two key Australian inquiries—the National Early Years Strategy and the Human Rights Commission inquiry into out of home care and youth justice systems. We argue that structural reforms and culturally safe and skillful care for parents experiencing trauma and violence is a serious gap, and a national priority. The first 2000 days represents a critical window of opportunity to transform cycles of trauma into cycles of healing. It is time to ‘replant the birthing trees’ and ensure that all Aboriginal and Torres Strait Islander babies and families can have the best possible start to life through comprehensive models of care grounded in recognition of the right to self-determination and culture. Full article
(This article belongs to the Special Issue Self Determination in First Peoples Child Protection)
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13 pages, 1098 KB  
Article
Wrangling Real-World Data: Optimizing Clinical Research Through Factor Selection with LASSO Regression
by Kerry A. Howard, Wes Anderson, Jagdeep T. Podichetty, Ruth Gould, Danielle Boyce, Pam Dasher, Laura Evans, Cindy Kao, Vishakha K. Kumar, Chase Hamilton, Ewy Mathé, Philippe J. Guerin, Kenneth Dodd, Aneesh K. Mehta, Chris Ortman, Namrata Patil, Jeselyn Rhodes, Matthew Robinson, Heather Stone and Smith F. Heavner
Int. J. Environ. Res. Public Health 2025, 22(4), 464; https://doi.org/10.3390/ijerph22040464 - 21 Mar 2025
Viewed by 1905
Abstract
Data-driven approaches to clinical research are necessary for understanding and effectively treating infectious diseases. However, challenges such as issues with data validity, lack of collaboration, and difficult-to-treat infectious diseases (e.g., those that are rare or newly emerging) hinder research. Prioritizing innovative methods to [...] Read more.
Data-driven approaches to clinical research are necessary for understanding and effectively treating infectious diseases. However, challenges such as issues with data validity, lack of collaboration, and difficult-to-treat infectious diseases (e.g., those that are rare or newly emerging) hinder research. Prioritizing innovative methods to facilitate the continued use of data generated during routine clinical care for research, but in an organized, accelerated, and shared manner, is crucial. This study investigates the potential of CURE ID, an open-source platform to accelerate drug-repurposing research for difficult-to-treat diseases, with COVID-19 as a use case. Data from eight US health systems were analyzed using least absolute shrinkage and selection operator (LASSO) regression to identify key predictors of 28-day all-cause mortality in COVID-19 patients, including demographics, comorbidities, treatments, and laboratory measurements captured during the first two days of hospitalization. Key findings indicate that age, laboratory measures, severity of illness indicators, oxygen support administration, and comorbidities significantly influenced all-cause 28-day mortality, aligning with previous studies. This work underscores the value of collaborative repositories like CURE ID in providing robust datasets for prognostic research and the importance of factor selection in identifying key variables, helping to streamline future research and drug-repurposing efforts. Full article
(This article belongs to the Special Issue Big Data in Public Health: Challenges and Opportunities)
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23 pages, 533 KB  
Article
Taking Alberta Back: Faith, Fuel, and Freedom on the Canadian Far Right
by Jacob McLean, Emily Laxer and Efe Peker
Religions 2024, 15(10), 1250; https://doi.org/10.3390/rel15101250 - 15 Oct 2024
Cited by 1 | Viewed by 6286
Abstract
Alberta, Canada is both a major extractive zone—home to the world’s third largest proven oil reserves, mostly in the form of oil sands located in the north of the province—and a place whose political culture has been profoundly influenced by evangelical Christianity. [...] Read more.
Alberta, Canada is both a major extractive zone—home to the world’s third largest proven oil reserves, mostly in the form of oil sands located in the north of the province—and a place whose political culture has been profoundly influenced by evangelical Christianity. It is both “petro province” and “God’s province”. Despite these distinct political economic and socio-cultural features, relatively little scholarly attention has been given to the contemporary relationships among them. To explore this, we profile the populist far-right social movement organization Take Back Alberta (TBA), which, by channeling the interlocking “freedom” and separatist movements into the governing United Conservative Party (UCP), played a pivotal role in Alberta Premier Danielle Smith’s rise to power. We ask the following question: what role do religion and a populist defense of the fossil fuel industry (or “extractive populism”) play, both ideologically and organizationally, within TBA? Drawing from TBA-related documents, including websites, podcasts, social media, and speeches, our analysis produces two key findings: first, that TBA deploys a radical, far-right version of extractive populism, which “anchors” the Danielle Smith government, and, second, that evangelical Christianity contributes to this extractive populism organizationally—by impacting TBA’s membership and resource infrastructure—and discursively, by influencing the collective action frames utilized by TBA leaders in advocating for the interests of the fossil fuel industry. Full article
(This article belongs to the Special Issue Religion in Extractive Zones)
21 pages, 3542 KB  
Article
Metabolic Deficits in the Retina of a Familial Dysautonomia Mouse Model
by Stephanann M. Costello, Anastasia Schultz, Donald Smith, Danielle Horan, Martha Chaverra, Brian Tripet, Lynn George, Brian Bothner, Frances Lefcort and Valérie Copié
Metabolites 2024, 14(8), 423; https://doi.org/10.3390/metabo14080423 - 31 Jul 2024
Cited by 2 | Viewed by 2515
Abstract
Neurodegenerative retinal diseases such as glaucoma, diabetic retinopathy, Leber’s hereditary optic neuropathy (LHON), and dominant optic atrophy (DOA) are marked by progressive death of retinal ganglion cells (RGC). This decline is promoted by structural and functional mitochondrial deficits, including electron transport chain (ETC) [...] Read more.
Neurodegenerative retinal diseases such as glaucoma, diabetic retinopathy, Leber’s hereditary optic neuropathy (LHON), and dominant optic atrophy (DOA) are marked by progressive death of retinal ganglion cells (RGC). This decline is promoted by structural and functional mitochondrial deficits, including electron transport chain (ETC) impairments, increased oxidative stress, and reduced energy (ATP) production. These cellular mechanisms associated with progressive optic nerve atrophy have been similarly observed in familial dysautonomia (FD) patients, who experience gradual loss of visual acuity due to the degeneration of RGCs, which is thought to be caused by a breakdown of mitochondrial structures, and a disruption in ETC function. Retinal metabolism plays a crucial role in meeting the elevated energetic demands of this tissue, and recent characterizations of FD patients’ serum and stool metabolomes have indicated alterations in central metabolic processes and potential systemic deficits of taurine, a small molecule essential for retina and overall eye health. The present study sought to elucidate metabolic alterations that contribute to the progressive degeneration of RGCs observed in FD. Additionally, a critical subpopulation of retinal interneurons, the dopaminergic amacrine cells, mediate the integration and modulation of visual information in a time-dependent manner to RGCs. As these cells have been associated with RGC loss in the neurodegenerative disease Parkinson’s, which shares hallmarks with FD, a targeted analysis of the dopaminergic amacrine cells and their product, dopamine, was also undertaken. One dimensional (1D) proton (1H) nuclear magnetic resonance (NMR) spectroscopy, mass spectrometry, and retinal histology methods were employed to characterize retinae from the retina-specific Elp1 conditional knockout (CKO) FD mouse model (Pax6-Cre; Elp1LoxP/LoxP). Metabolite alterations correlated temporally with progressive RGC degeneration and were associated with reduced mitochondrial function, alterations in ATP production through the Cahill and mini-Krebs cycles, and phospholipid metabolism. Dopaminergic amacrine cell populations were reduced at timepoints P30–P90, and dopamine levels were 25–35% lower in CKO retinae compared to control retinae at P60. Overall, this study has expanded upon our current understanding of retina pathology in FD. This knowledge may apply to other retinal diseases that share hallmark features with FD and may help guide new avenues for novel non-invasive therapeutics to mitigate the progressive optic neuropathy in FD. Full article
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12 pages, 2421 KB  
Article
Phylogenomic Characterization of Ranavirus Isolated from Wild Smallmouth Bass (Micropterus dolomieu)
by Hannah Quail, Pedro H. O. Viadanna, Jordan A. Vann, Hui-Min Hsu, Andrea Pohly, Willow Smith, Scott Hansen, Nicole Nietlisbach, Danielle Godard, Thomas B. Waltzek and Kuttichantran Subramaniam
Viruses 2024, 16(5), 715; https://doi.org/10.3390/v16050715 - 30 Apr 2024
Cited by 2 | Viewed by 2911
Abstract
In September 2021, 14 smallmouth bass (SMB; Micropterus dolomieu) with skin lesions were collected from Green Bay waters of Lake Michigan and submitted for diagnostic evaluation. All the skin samples tested positive for largemouth bass virus (LMBV) by conventional PCR. The complete genome [...] Read more.
In September 2021, 14 smallmouth bass (SMB; Micropterus dolomieu) with skin lesions were collected from Green Bay waters of Lake Michigan and submitted for diagnostic evaluation. All the skin samples tested positive for largemouth bass virus (LMBV) by conventional PCR. The complete genome of the LMBV (99,328 bp) isolated from a homogenized skin sample was determined using an Illumina MiSeq sequencer. A maximum likelihood (ML) phylogenetic analysis based on the 21 core iridovirus genes supported the LMBV isolated from SMB (LMBV-WVL21117) as a member of the species Santee-Cooper ranavirus. Pairwise nucleotide comparison of the major capsid protein (MCP) gene showed that LMBV-WVL21117 is identical to other LMBV reported from the United States and nearly identical to doctor fish virus and guppy virus 6 (99.2%) from Southeast Asia, as well as LMBV isolates from China and Thailand (99.1%). In addition, ML phylogenetic analysis based on the MCP gene suggests three genotypes of LMBV separated by region: genotype one from the United States, genotype two from Southeast Asia, and genotype three from China and Thailand. Additional research is needed to understand the prevalence and genetic diversity of LMBV strains circulating in wild and managed fish populations from different regions. Full article
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11 pages, 596 KB  
Communication
HIV-1 Remission: Accelerating the Path to Permanent HIV-1 Silencing
by Danielle E. Lyons, Priti Kumar, Nadia R. Roan, Patricia A. Defechereux, Cedric Feschotte, Ulrike C. Lange, Niren Murthy, Pauline Sameshima, Eric Verdin, Julie A. Ake, Matthew S. Parsons, Avindra Nath, Sara Gianella, Davey M. Smith, Esper G. Kallas, Thomas J. Villa, Richard Strange, Betty Mwesigwa, Robert L. Furler O’Brien, Douglas F. Nixon, Lishomwa C. Ndhlovu, Susana T. Valente and Melanie Ottadd Show full author list remove Hide full author list
Viruses 2023, 15(11), 2171; https://doi.org/10.3390/v15112171 - 28 Oct 2023
Cited by 11 | Viewed by 18256
Abstract
Despite remarkable progress, a cure for HIV-1 infection remains elusive. Rebound competent latent and transcriptionally active reservoir cells persevere despite antiretroviral therapy and rekindle infection due to inefficient proviral silencing. We propose a novel “block-lock-stop” approach, entailing long term durable silencing of viral [...] Read more.
Despite remarkable progress, a cure for HIV-1 infection remains elusive. Rebound competent latent and transcriptionally active reservoir cells persevere despite antiretroviral therapy and rekindle infection due to inefficient proviral silencing. We propose a novel “block-lock-stop” approach, entailing long term durable silencing of viral expression towards an irreversible transcriptionally inactive latent provirus to achieve long term antiretroviral free control of the virus. A graded transformation of remnant HIV-1 in PLWH from persistent into silent to permanently defective proviruses is proposed, emulating and accelerating the natural path that human endogenous retroviruses (HERVs) take over millions of years. This hypothesis was based on research into delineating the mechanisms of HIV-1 latency, lessons from latency reversing agents and advances of Tat inhibitors, as well as expertise in the biology of HERVs. Insights from elite controllers and the availability of advanced genome engineering technologies for the direct excision of remnant virus set the stage for a rapid path to an HIV-1 cure. Full article
(This article belongs to the Special Issue Regulation of HIV-1 Transcription and Latency)
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11 pages, 5412 KB  
Article
Dioxin-Linked Covalent Organic Framework-Supported Palladium Complex for Rapid Room-Temperature Suzuki–Miyaura Coupling Reaction
by Allea Campbell, Ziad Alsudairy, Chaochao Dun, Fazli Akram, Kayla Smith-Petty, Abrianna Ambus, Danielle Bingham, Tandabany Dinadayalane, Conrad Ingram and Xinle Li
Crystals 2023, 13(8), 1268; https://doi.org/10.3390/cryst13081268 - 17 Aug 2023
Cited by 7 | Viewed by 3434
Abstract
Covalent organic framework (COF)-supported palladium catalysts have garnered enormous attention for cross-coupling reactions. However, the limited linkage types in COF hosts and their suboptimal catalytic performance have hindered their widespread implementation. Herein, we present the first study immobilizing palladium acetate onto a dioxin-linked [...] Read more.
Covalent organic framework (COF)-supported palladium catalysts have garnered enormous attention for cross-coupling reactions. However, the limited linkage types in COF hosts and their suboptimal catalytic performance have hindered their widespread implementation. Herein, we present the first study immobilizing palladium acetate onto a dioxin-linked COF (Pd/COF-318) through a facile solution impregnation approach. By virtue of its permanent porosity, accessible Pd sites arranged in periodic skeletons, and framework robustness, the resultant Pd/COF-318 exhibits exceptionally high activity and broad substrate scope for the Suzuki–Miyaura coupling reaction between aryl bromides and arylboronic acids at room temperature within an hour, rendering it among the most effective Pd/COF catalysts for Suzuki–Miyaura coupling reactions to date. Moreover, Pd/COF-318 demonstrates excellent recyclability, retaining high activity over five cycles without significant deactivation. The leaching test confirms the heterogeneity of the catalyst. This work uncovers the vast potential of dioxin-linked COFs as catalyst supports for highly active, selective, and durable organometallic catalysis. Full article
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14 pages, 312 KB  
Article
Parent–Child Vaccination Concordance and Its Relationship to Child Age, Parent Age and Education, and Perceived Social Norms
by Pikuei Tu, Danielle Smith, Taylor Parker, Kartik Pejavara, J. Lloyd Michener and Cheryl Lin
Vaccines 2023, 11(7), 1210; https://doi.org/10.3390/vaccines11071210 - 6 Jul 2023
Cited by 13 | Viewed by 3367
Abstract
Researchers established that parental vaccination status often predicts that of their children, but a limited number of studies have examined factors influencing dyadic concordance or discordance (i.e., same or different vaccination status or intent for both members). We investigated how child versus parent [...] Read more.
Researchers established that parental vaccination status often predicts that of their children, but a limited number of studies have examined factors influencing dyadic concordance or discordance (i.e., same or different vaccination status or intent for both members). We investigated how child versus parent age as well as parents’ perceptions of their respective friends’ immunization behavior impacted un/vaccinated parents’ decisions regarding vaccinating their child. An online survey obtained the COVID-19 vaccination status and views of 762 parents of 5–17-year-old children. More than three-quarters of all dyads were concordant; 24.1% of vaccinated parents would not vaccinate their child, with greater hesitancy for younger children and among younger or less educated parents. Children of vaccinated parents and of parents who thought most of their child’s friends were vaccinated were 4.7 and 1.9 times, respectively, more likely to be vaccinated; unvaccinated parents were 3.2 times more likely to accept the vaccine for their child if they believed most of their friends would vaccinate their children. Further, parents who reported that most of their friends were vaccinated were 1.9 times more likely to have obtained the vaccine themselves, illustrating the influence of social norms. Regardless of their own vaccination status, parents of unvaccinated children were more likely to be politically conservative. If communities or circles of friends could achieve or convey a vaccinated norm, this might persuade undecided or reluctant parents to vaccinate their children. Future research should examine the effects of community behavior and messages highlighting social norms on pediatric vaccine uptake. Full article
(This article belongs to the Special Issue Pediatric Infectious Disease and Vaccination)
17 pages, 930 KB  
Article
Bioeconomics of Florida Recreational Fisheries to Estimate Willingness to Pay for Bag and Size Limits of Spotted Seatrout
by Danielle Schwarzmann, Steven G. Smith, Jerald S. Ault and Vernon (Bob) Leeworthy
Water 2023, 15(9), 1696; https://doi.org/10.3390/w15091696 - 27 Apr 2023
Viewed by 2590
Abstract
This research focuses on the economic component of a bioeconomic model for spotted seatrout in the recreational fisheries on Florida’s west coast. A survey was designed to assess how anglers, who caught or targeted spotted seatrout on Florida’s west coast, valued combined changes [...] Read more.
This research focuses on the economic component of a bioeconomic model for spotted seatrout in the recreational fisheries on Florida’s west coast. A survey was designed to assess how anglers, who caught or targeted spotted seatrout on Florida’s west coast, valued combined changes in the existing bag limit and size limit. The biological component of the stated preference model deemed such change necessary to ensure a sustainable stock. The biological model provides an economic constraint and results in the treatment of the bag and size limits as a composite good in which separate utilities cannot be measured for each component of the composite good. The stated preference choice method (SPCM) was used to estimate the change in economic value by boat mode of access (e.g., charter boat and private boat). The models also controlled for length of trip (full day versus half-day) for charter boat trips and for type of day (weekend or weekday) for both boat modes of access. Since those who accessed the fishery by private boat had a lower probability of achieving the bag limit/size limit, a model was run to predict the probability of achieving the bag limit/size limit and the probability was interacted with the bag limit/size limit choice. This yielded a positive willingness to pay for the bag limit/size limit combination that was sustainable. Estimated values per person per day for changing the bag limit/size limits to a sustainable level were USD 20.24 for the charter boat mode and USD 32.54 for the private boat mode. Aggregating this to a total value change using a five-year annual average (2012–2016) of total days of fishing for spotted seatrout on Florida’s West Coast yielded an estimate of USD 147.9 million per year for charter boat anglers. The total annual value was about USD 3.4 million, while for private boat anglers the annual value was about USD 144.5 million. Full article
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16 pages, 2102 KB  
Article
Experimentally Induced Dieback Conditions Limit Phragmites australis Growth
by Wesley A. Bickford, Danielle S. Snow, McKenzie K. H. Smith, Kathryn L. Kingsley, James F. White and Kurt P. Kowalski
Microorganisms 2023, 11(3), 639; https://doi.org/10.3390/microorganisms11030639 - 2 Mar 2023
Cited by 1 | Viewed by 2304
Abstract
Phragmites australis is a cosmopolitan grass species common in wetland ecosystems across the world. In much of North America, the non-native subspecies of Phragmites threatens wetland biodiversity, hinders recreation, and is a persistent problem for natural resource managers. In other parts of the [...] Read more.
Phragmites australis is a cosmopolitan grass species common in wetland ecosystems across the world. In much of North America, the non-native subspecies of Phragmites threatens wetland biodiversity, hinders recreation, and is a persistent problem for natural resource managers. In other parts of the world, populations are in decline, as Reed Die-Back Syndrome (RDBS) plagues some Phragmites stands in its native range. RDBS is defined by a clumped growth form, stunted root and shoot growth, premature senescence, and shoot death. RDBS has been associated with a build-up of short-chain fatty acids (SCFAs) and altered bacterial and oomycete communities in soils, but the exact causes are unknown. To control invasive Phragmites populations, we sought to develop treatments that mimic the conditions of RDBS. We applied various SCFA treatments at various concentrations to mesocosm soils growing either Phragmites or native wetland plants. We found that the high-concentration SCFA treatments applied weekly induced strong significant declines in above- and belowground biomass of Phragmites. Declines were significant but slightly weaker in native species. In addition, soil bacterial abundance increased, diversity decreased, and bacterial community composition significantly differed following treatments, such that treated pots maintained a higher relative abundance of Pseudomonadaceae and fewer Acidobacteriaceae than untreated pots. Our results suggest that application of SCFAs to Phragmites can lead to stunted plants and altered soil bacterial communities similar to populations affected by RDBS. However, the lack of species-specificity and intensive application rate may not make this treatment ideal as a widespread management tool. Full article
(This article belongs to the Special Issue Advances in Plant-Microbe Interactions)
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10 pages, 1386 KB  
Article
Genomic Characterization of a Relative of Mumps Virus in Lesser Dawn Bats of Southeast Asia
by Adrian C. Paskey, Xiao Fang Lim, Justin H. J. Ng, Gregory K. Rice, Wan Ni Chia, Casandra W. Philipson, Randy Foo, Regina Z. Cer, Kyle A. Long, Matthew R. Lueder, Lindsay Glang, Kenneth G. Frey, Theron Hamilton, Ian H. Mendenhall, Gavin J. Smith, Danielle E. Anderson, Lin-Fa Wang and Kimberly A. Bishop-Lilly
Viruses 2023, 15(3), 659; https://doi.org/10.3390/v15030659 - 28 Feb 2023
Cited by 3 | Viewed by 3043
Abstract
The importance of genomic surveillance on emerging diseases continues to be highlighted with the ongoing SARS-CoV-2 pandemic. Here, we present an analysis of a new bat-borne mumps virus (MuV) in a captive colony of lesser dawn bats (Eonycteris spelaea). This report [...] Read more.
The importance of genomic surveillance on emerging diseases continues to be highlighted with the ongoing SARS-CoV-2 pandemic. Here, we present an analysis of a new bat-borne mumps virus (MuV) in a captive colony of lesser dawn bats (Eonycteris spelaea). This report describes an investigation of MuV-specific data originally collected as part of a longitudinal virome study of apparently healthy, captive lesser dawn bats in Southeast Asia (BioProject ID PRJNA561193) which was the first report of a MuV-like virus, named dawn bat paramyxovirus (DbPV), in bats outside of Africa. More in-depth analysis of these original RNA sequences in the current report reveals that the new DbPV genome shares only 86% amino acid identity with the RNA-dependent RNA polymerase of its closest relative, the African bat-borne mumps virus (AbMuV). While there is no obvious immediate cause for concern, it is important to continue investigating and monitoring bat-borne MuVs to determine the risk of human infection. Full article
(This article belongs to the Special Issue Bat-Borne Viruses Research)
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18 pages, 3544 KB  
Article
DBP7 and YRF1-6 Are Involved in Cell Sensitivity to LiCl by Regulating the Translation of PGM2 mRNA
by Sasi Kumar Jagadeesan, Mustafa Al-gafari, Jiashu Wang, Sarah Takallou, Danielle Allard, Maryam Hajikarimlou, Thomas David Daniel Kazmirchuk, Houman Moteshareie, Kamaledin B. Said, Reza Nokhbeh, Myron Smith, Bahram Samanfar and Ashkan Golshani
Int. J. Mol. Sci. 2023, 24(2), 1785; https://doi.org/10.3390/ijms24021785 - 16 Jan 2023
Cited by 4 | Viewed by 3497
Abstract
Lithium chloride (LiCl) has been widely researched and utilized as a therapeutic option for bipolar disorder (BD). Several pathways, including cell signaling and signal transduction pathways in mammalian cells, are shown to be regulated by LiCl. LiCl can negatively control the expression and [...] Read more.
Lithium chloride (LiCl) has been widely researched and utilized as a therapeutic option for bipolar disorder (BD). Several pathways, including cell signaling and signal transduction pathways in mammalian cells, are shown to be regulated by LiCl. LiCl can negatively control the expression and activity of PGM2, a phosphoglucomutase that influences sugar metabolism in yeast. In the presence of galactose, when yeast cells are challenged by LiCl, the phosphoglucomutase activity of PGM2p is decreased, causing an increase in the concentration of toxic galactose metabolism intermediates that result in cell sensitivity. Here, we report that the null yeast mutant strains DBP7∆ and YRF1-6∆ exhibit increased LiCl sensitivity on galactose-containing media. Additionally, we demonstrate that DBP7 and YRF1-6 modulate the translational level of PGM2 mRNA, and the observed alteration in translation seems to be associated with the 5′-untranslated region (UTR) of PGM2 mRNA. Furthermore, we observe that DBP7 and YRF1-6 influence, to varying degrees, the translation of other mRNAs that carry different 5′-UTR secondary structures. Full article
(This article belongs to the Special Issue mRNAs in Biology)
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20 pages, 4765 KB  
Article
Distribution Modeling and Gap Analysis of Shorebird Conservation in Northern Brazil
by Daniel Merchant, Richard G. Lathrop, Carlos David Santos, Danielle Paludo, Larry Niles, Joseph A. M. Smith, Stephanie Feigin and Amanda Dey
Remote Sens. 2023, 15(2), 452; https://doi.org/10.3390/rs15020452 - 12 Jan 2023
Cited by 5 | Viewed by 3654
Abstract
Migratory shorebirds are currently at significant risk, with populations of multiple species dropping globally, often due to habitat disruption and loss. The coast of northern Brazil, along the states of Pará and Maranhão, encompasses one of the broadest expanses of shorebird overwintering habitat [...] Read more.
Migratory shorebirds are currently at significant risk, with populations of multiple species dropping globally, often due to habitat disruption and loss. The coast of northern Brazil, along the states of Pará and Maranhão, encompasses one of the broadest expanses of shorebird overwintering habitat for many shorebird species in the Atlantic Americas Flyway. Delineating how current management protects shorebird habitat is an important first step to identifying gaps in protections that then need to be prioritized. Different frameworks of conservation decision-making, such as focusing on flagship, umbrella, or biodiversity, can be used to prioritize what habitat needs to be protected. Understanding the effects of these different conservation perspectives is key to making informed management decisions. Multiple dates of Landsat 8 imagery at different tidal stages were used to identify intertidal habitats for further analysis. MaxEnt species distribution models were derived for each species using remote sensing and landscape metrics, as well as point-count survey data collected during the winters of 2016 and 2017. Landsat 8 and Sentinel 2 image data were included as direct inputs to the model rather than interpreted and mapped first into different habitat types. The resulting Maxent models successfully delineated between presence and absence locations for five of the eight target shorebird species. The model outputs were combined to map the intertidal habitat covered under several different management scenarios. These scenarios included using red knots as a flagship species, semipalmated sandpipers as an umbrella species, and species richness as a metric of shorebird diversity. Slightly more than 25% of delineated intertidal habitat was found to be included within a designated Marine Extractive Reserve, with three major gaps in current protections identified. The flagship, umbrella, and biodiversity perspectives result in different prioritizations of these distinct locations. While umbrella and diversity approaches are successful at protecting diverse communities, community assemblages of rarer or specialist species, such as the red knots, may fall outside their protective shadows. A hybrid approach that uses both diversity and the extent of rare flagship species produces results that best meet the management goals of identifying gaps in existing conservation to protect the most at-risk species while conserving the diverse assemblages they coexist with. Full article
(This article belongs to the Special Issue Application of Remote Sensing in Migratory Birds Conservation)
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24 pages, 10688 KB  
Article
Quality Analysis of Weld-Line Defects in Carbon Fibre Reinforced Sheet Moulding Compounds by Automated Eddy Current Scanning
by Nessa Fereshteh-Saniee, Neil Reynolds, Danielle Norman, Connie Qian, David J. Armstrong, Paul Smith, Richard Kupke, Mark A. Williams and Kenneth Kendall
J. Manuf. Mater. Process. 2022, 6(6), 151; https://doi.org/10.3390/jmmp6060151 - 22 Nov 2022
Cited by 6 | Viewed by 3098
Abstract
Discontinuous fibre reinforced composites enable the manufacture of integrated structural components via the complex flow process of compression moulding. However, such processes can lead to the formation of detrimental weld-lines. Here, the meso-structure of carbon fibre sheet moulding compounds (C-SMC) was analysed using [...] Read more.
Discontinuous fibre reinforced composites enable the manufacture of integrated structural components via the complex flow process of compression moulding. However, such processes can lead to the formation of detrimental weld-lines. Here, the meso-structure of carbon fibre sheet moulding compounds (C-SMC) was analysed using conventional non-destructive techniques and automated eddy current (EC) scanning, as well as destructive methods, in an attempt to identify defects such as weld-lines in this class of materials. Compression-moulded plaques with forced weld-lines in two different configurations (adjacent and opposing flow joints) were analysed, showing up to 80% strength reduction versus a defect-free plaque. The EC-determined local fibre orientation and elucidated local microstructure matched those obtained using conventional techniques, showing a dramatic fibre tow alignment parallel to the weld-lines. It was found that failure occurred in proximity to the “non-uniformity” defect regions identified by EC analyses, demonstrating the use of robot-guided EC for successful defect detection in C-SMC structures. Full article
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