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29 pages, 6588 KB  
Article
Effect of Biodegradable PLA-Based and Conventional LDPE Mulch Films on Pathogenic and Functional Soil Microbial Communities
by Magdalena Zaborowska, Jadwiga Wyszkowska, Agata Borowik and Jan Kucharski
Int. J. Mol. Sci. 2026, 27(12), 5530; https://doi.org/10.3390/ijms27125530 - 18 Jun 2026
Viewed by 401
Abstract
Plastics and microplastics are widespread in the environment, yet knowledge about their impact on agricultural soils, including their microbiological properties, remains limited. Therefore, this study addressed the research question regarding the impact of secondary microplastics, biodegradable poly(lactic acid) (PLA) mulch film, and low-density [...] Read more.
Plastics and microplastics are widespread in the environment, yet knowledge about their impact on agricultural soils, including their microbiological properties, remains limited. Therefore, this study addressed the research question regarding the impact of secondary microplastics, biodegradable poly(lactic acid) (PLA) mulch film, and low-density polyethylene (LDPE) film on the abundance, structure, and functions of soil bacteria, with particular emphasis on the presence of bacterial pathogens. PLA and LDPE were applied to the soil at a dose of 4 g kg−1 d.m. of soil. The aim of the experiment was to evaluate and compare the effectiveness of soil bioaugmentation with the Pseudomonas umsongensis strain and its biostimulation with humic acids in mitigating the negative effects of microplastics. The response of culturable bacteria revealed high sensitivity of organotrophic bacteria to both microplastics, with a stronger inhibitory effect from PLA, as well as stimulation of actinomycetes. 16S rRNA gene amplicon sequencing indicated that the materials differentially influenced the bacterial response. PLA most strongly stimulated Actinobacteriota and favored the dominance of Bacillus and Limnochorda, whereas LDPE promoted the growth of Actinobacteriota and Chloroflexota as well as genera KD4-96 and 1921-2. Both microplastics were colonized by potential pathogens, including Bacillus, Mycobacterium, Ralstonia, and Cupriavidus. PLA additionally stimulated the proliferation of Leifsonia sp. and Curtobacterium sp., while both PLA and LDPE reduced the abundance of Enterobacter sp. and Herbaspirillum sp. Bioaugmentation using the Pseudomonas umsongensis strain was more effective in restoring the balance of the soil microbiome than biostimulation with humic acids. The results indicate that microbial preparations based on Pseudomonas umsongensis may serve as an important tool in restoring the balance of soil exposed to microplastics. Full article
(This article belongs to the Special Issue Environmental Microorganisms and Pathogen Infections)
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15 pages, 5207 KB  
Article
Ability of Different Bacteria from Grapevine to Colonize Arabidopsis thaliana Plants
by Olga A. Aleynova, Alexey A. Ananev, Nikolay N. Nityagovsky, Andrey R. Suprun, Alina A. Beresh, Alexandra S. Dubrovina and Konstantin V. Kiselev
Plants 2026, 15(8), 1151; https://doi.org/10.3390/plants15081151 - 9 Apr 2026
Viewed by 687
Abstract
This study investigates the impact of inoculating seeds with bacterial endophytes isolated from Vitis amurensis Rupr. on endophytic community composition in Arabidopsis thaliana (L.) Heynh. Ten bacterial isolates of the genera Agrobacterium, Bacillus, Curtobacterium, Erwinia, Frondihabitans, Gordonia, [...] Read more.
This study investigates the impact of inoculating seeds with bacterial endophytes isolated from Vitis amurensis Rupr. on endophytic community composition in Arabidopsis thaliana (L.) Heynh. Ten bacterial isolates of the genera Agrobacterium, Bacillus, Curtobacterium, Erwinia, Frondihabitans, Gordonia, Pantoea, Pseudomonas, Sphingomonas, and Xanthomonas were applied to seeds and some visible phenotypic effects were observed on plant growth after two weeks. High-throughput sequencing of 16S rRNA revealed that the native endophytic microbiome of A. thaliana was dominated by Gammaproteobacteria, Actinomycetes, Bacteroidia, and Alphaproteobacteria. The key families were Microscillaceae, Chitinophagaceae, Rhizobiaceae, Rhodanobacteraceae, Nocardioi-daceae, Nocardiaceae, Xanthomonadaceae, Devosiaceae, Microbacteriaceae, Crocinitomi-caceae, Pseudomonadaceae, Solimonadaceae, Comamonadaceae, Caulobacteraceae, and Micrococcaceae. Arabidopsis seed inoculation with Agrobacterium sp. R8SCh-B12, Curtobacterium sp. P7SA-B3, and Gordonia aichiensis P6PL2 significantly reduced alpha diversity (Shannon index) and altered beta diversity relative to controls, indicating strong community restructuring. These three isolates, along with Pseudomonas sp. R8SCh-B2, Sphingomonas sp. RA62c-B5, Xanthomonas sp. R7SCh-B6, and Bacillus velezensis AMR25, successfully colonized the plant tissues, as evidenced by significant increases in genus-specific amplicon sequence variants, ASVs (up to 17,820-fold for Curtobacterium sp. ASV33). In contrast, Pantoea sp. P7SCH-B5, Erwinia sp. R8SCh-B3, and Frondihabitans sp. RA62c-B2 failed to colonize A. thaliana, despite being applied to the seeds, suggesting the existence of mechanisms restraining colonization. These findings demonstrate that only a subset of grapevine-derived endophytes can effectively colonize A. thaliana, and that successful colonization correlates with significant shifts in the native microbiome, even in the absence of overt phenotypic changes. This emphasizes the importance of strain-specific compatibility in plant–endophyte interactions. Thus, we report the first descriptions of several novel endophytes that colonized Arabidopsis plants and establish a convenient model to investigate plant–bacterial interactions. Full article
(This article belongs to the Special Issue New Advancements in Plant–Microbes Interactions)
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19 pages, 3080 KB  
Article
The Influence of Wild Grapevine Endophytes on the Growth of the Model Plant Arabidopsis thaliana (L.) Heynh
by Olga A. Aleynova, Alexey A. Ananev, Nikolay N. Nityagovsky and Konstantin V. Kiselev
Life 2026, 16(4), 566; https://doi.org/10.3390/life16040566 - 31 Mar 2026
Cited by 1 | Viewed by 842
Abstract
We have evaluated the growth characteristics of the model plant Arabidopsis thaliana after inoculation of A. thaliana seeds with the most common endophytes of wild grapevine Vitis amurensis Rupr., namely bacteria Rhizobium (syn. Agrobacterium) sp., Bacillus velezensis, Curtobacterium sp, Erwinia sp., [...] Read more.
We have evaluated the growth characteristics of the model plant Arabidopsis thaliana after inoculation of A. thaliana seeds with the most common endophytes of wild grapevine Vitis amurensis Rupr., namely bacteria Rhizobium (syn. Agrobacterium) sp., Bacillus velezensis, Curtobacterium sp, Erwinia sp., Gordonia aichiensis, Pantoea sp., Pseudomonas sp., Sphingomonas sp., Xanthomonas sp., and the fungi Biscogniauxia sp., Cladosporium sp., Didymella sp., Exobasidium sp., Penicillium sp., Pestalotiopsis sp, and Xylaria sp. A positive effect on plant growth was observed in A. thaliana following seed inoculation with endophytic fungi (Xylaria sp., Didymella sp., and Exobasidium sp.) and bacteria (Gordonia aichiensis and Sphingomonas sp.). The inoculation with the fungi Xylaria sp., Didymella sp., Exobasidium sp., and Penicillium sp. significantly increased seed production in A. thaliana by 2.5–5-fold. The analysis of the phytohormone-regulating gene transcription in A. thaliana plants following inoculation with the grapevine endophytic microorganisms suggests that plant growth was enhanced through transcriptional changes in individual genes of hormone biosynthetic pathways. Consequently, endophytic bacteria and fungi from V. amurensis may serve as potential natural growth stimulators for agricultural plants. Full article
(This article belongs to the Section Plant Science)
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17 pages, 2759 KB  
Article
Leaf Traits Mediate Phyllosphere Bacterial Community Assembly and Their Role in Degrading Traffic-Derived Polycyclic Aromatic Hydrocarbons
by Zheng Yang, Qingyang Liu, Shili Tian, Yanju Liu, Ming Yang, Ying Liang and Xin Chen
Microorganisms 2026, 14(2), 334; https://doi.org/10.3390/microorganisms14020334 - 1 Feb 2026
Cited by 1 | Viewed by 1181
Abstract
Transport emissions are a major source of urban polycyclic aromatic hydrocarbons (PAHs), posing risks to human health. While plant leaves and their epiphytic microbes contribute to PAH degradation, how plant traits and environmental factors affect this process remains unclear. This study examined 20 [...] Read more.
Transport emissions are a major source of urban polycyclic aromatic hydrocarbons (PAHs), posing risks to human health. While plant leaves and their epiphytic microbes contribute to PAH degradation, how plant traits and environmental factors affect this process remains unclear. This study examined 20 tree species in Beijing’s traffic corridors to explore PAH enrichment on leaves and the structure of phyllospheric bacterial communities. Results show that leaf area, morphology, and sampling height significantly influenced bacterial community assembly. Normalized Stochasticity Ratio (NST) analysis indicated that deterministic processes dominate on medium-sized leaves (11.8–40.1 cm2), simple leaves, and those below 2.3 m or above 3 m in height, whereas stochastic factors prevail on nano leaves, compound leaves, and leaves at low-position (<2.3 m). Although low-molecular-weight PAHs (2–4 rings) were predominant in leaves, Mantel tests revealed significant positive correlations between bacterial communities and high molecular weight PAHs (4–6 rings), such as benz(a)anthracene, benzo[e]pyrene, and picene. Spearman analysis identified 10 dominant bacterial taxa with PAH degradation potential, including Kocuria rosea, Serratia symbiotica, Massilia sp. WG5, and seven unclassified species from Hymenobacter, Sphingomonas, Roseomonas, Curtobacterium, and Deinococcus. Functional Annotation of Prokaryotic Taxa(FAPROTAX) prediction further associated 14 species across six genera, including Acinetobacter, Nocardioides, Gordonia, Rhodococcus, Clostridium_sensu_stricto_18, and Geobacter, with PAH degradation function. This work clarifies the composition and function of phyllospheric PAH-degrading bacteria in an urban traffic environment, offering a theoretical basis for enhancing degradation via bacterial consortia, biosurfactants, and optimized plant selection. Full article
(This article belongs to the Section Environmental Microbiology)
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24 pages, 3179 KB  
Article
Growth-Promoting Effects and Mechanisms of Synthetic Plant Growth-Promoting Rhizobacteria on Maize Seedlings
by Shuang Yu, Minlong Mao, Hengfei Zhang, Huanyu Song and Yu Sun
Microorganisms 2025, 13(11), 2460; https://doi.org/10.3390/microorganisms13112460 - 28 Oct 2025
Cited by 3 | Viewed by 1626
Abstract
With the development of microbial fertilizers, efforts have been made to enrich the strain resources of plant growth-promoting rhizobacteria (PGPR) in maize and to compare the growth-promoting effects of synthetic microbial communities (SynComs) with those of single strains. To achieve this, phenotypic measurements [...] Read more.
With the development of microbial fertilizers, efforts have been made to enrich the strain resources of plant growth-promoting rhizobacteria (PGPR) in maize and to compare the growth-promoting effects of synthetic microbial communities (SynComs) with those of single strains. To achieve this, phenotypic measurements and RNA sequencing (RNA-seq) were performed on maize roots treated with SynComs and single-strain bacterial suspensions, aiming to investigate the regulatory influence of PGPR on differential gene expression and key metabolic pathways in maize roots. In this study, 59 PGPR strains were selected, representing genera including Bacillus, Pseudomonas, Burkholderia sp., Curtobacterium pusillum, Acidovorax, Sphingobium, Mitsuaria, Bacterium, Rhodanobacter, Variovorax, Ralstonia, Brevibacillus, Terrabacter, Flavobacterium, Comamonadaceae, Achromobacter, Paraburkholderia, and Massilia. Based on the growth-promoting effects observed in pot experiments, optimal bacterial strains were selected according to the principles of functional complementarity and functional superposition to construct the SynCom. The selected strains included Burkholderia sp. A2, Pseudomonas sp. C9, Curtobacterium pusillum E2, and Bacillus velezensis F3. The results demonstrated that individual strains exerted measurable growth-promoting effects on seedlings; however, the growth-promoting capability of the SynCom was significantly stronger than that of single strains. The synthetic microbial community ALL group markedly increased root length, shoot fresh weight, shoot dry weight, number of branches, and number of root tips in maize seedlings. RNA-seq analysis of maize roots treated with the SynCom (ALL group) was conducted in comparison with CK, A2, C9, E2, and F3 treatment groups. A total of 5245 differentially expressed genes (DEGs) were identified, of which only 133 were common across treatments. GO and KEGG analyses revealed that DEGs were enriched in multiple biological processes, including cellular amide biosynthetic and metabolic processes, flavonoid biosynthetic and metabolic processes, carbohydrate metabolism, amino acid metabolism, lipid metabolism, and translation. The majority of enriched pathways were associated with primary and secondary metabolism, indicating that these bacterial strains promote plant growth by modulating a wide range of metabolic pathways in plant cells. Overall, this study provides a molecular framework for understanding the mechanisms underlying the growth-promoting effects of SynComs on maize roots and offers valuable insights for future research aimed at identifying key regulatory genes. Full article
(This article belongs to the Special Issue Plant Growth-Promoting Bacteria)
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15 pages, 943 KB  
Article
Removal of Persistent Bacterial Contaminants from In Vitro Shoot Cultures of Raspberry (Rubus idaeus L.) Using Vacuum Infiltration and Its Effect on Multiplication Efficiency
by Aleksandra Trzewik, Tadeusz Malinowski, Angelika Niewiadomska-Wnuk, Katarzyna Mynett and Teresa Orlikowska
Agronomy 2025, 15(11), 2452; https://doi.org/10.3390/agronomy15112452 - 22 Oct 2025
Viewed by 1358
Abstract
The aim of this study was to find a way to remove persistent bacteria inhabiting in vitro shoot cultures of raspberry. Often, decontamination treatments fail to reach bacteria residing in internal tissues, leading to contaminated cultures later. Three raspberry cultivars, each harboring a [...] Read more.
The aim of this study was to find a way to remove persistent bacteria inhabiting in vitro shoot cultures of raspberry. Often, decontamination treatments fail to reach bacteria residing in internal tissues, leading to contaminated cultures later. Three raspberry cultivars, each harboring a unique bacterial contaminant, were used in this study. Experiments were conducted to assess the potential for eliminating these bacteria using biocide infiltration at 30 mbar. The following biocides were used: mercuric chloride (HgCl2 at 0.05 and 0.1%), Plant Preservative Mixture (PPMTM 0.2–4%), rifampicin (50–200 mg L−1), and sodium hypochlorite (NaOCl 0.1–60%). Only 0.05 or 0.1% HgCl2 applied via infiltration successfully eliminated all of the bacteria from the shoots, which remained bacteria-free for several years, as confirmed by indexing explants on bacterial media at each subculture. While most treated shoots became necrotic and died due to infiltration, the surviving shoots remained vital and provided bacteria-free material for long-term propagation. Results from experiments comparing micropropagation potential in bacteria-contaminated and bacteria-free cultures showed that bacteria-free shoots produced longer shoots, and the total number of shoots did not differ, except for ‘Norna’/Curtobacbacteria-free cultures, which were more productive. Bacteria-contaminated shoots rooted at higher percentages, but roots were much shorter, and plantlets initiated growth during acclimatization later. Cultures that were contaminated did not survive storage at 4 °C in the dark for 4–6 months. Full article
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19 pages, 1848 KB  
Article
A Multicenter Exploration of Sick Building Syndrome Symptoms in Malaysian Schools: Indoor Pollutants, Microbial Taxa, and Metabolites
by Yi Zhang, Yongqi Bu, Yang Chen, Peian Chen, Bingqian Du, Jamal Hisham Hashim, Zailina Hashim, Gunilla Wieslander, Dan Norbäck, Yun Xia and Xi Fu
Metabolites 2025, 15(2), 111; https://doi.org/10.3390/metabo15020111 - 10 Feb 2025
Cited by 3 | Viewed by 2567
Abstract
Background: The role of the indoor microbiome in sick building syndrome (SBS) is well-recognized, yet prior studies have been limited to single-center analyses, limiting a broader understanding and applicability of their findings. Methods: We conducted a multicenter indoor microbiome and metabolome investigation for [...] Read more.
Background: The role of the indoor microbiome in sick building syndrome (SBS) is well-recognized, yet prior studies have been limited to single-center analyses, limiting a broader understanding and applicability of their findings. Methods: We conducted a multicenter indoor microbiome and metabolome investigation for SBS, involving 1139 middle school students across three regions in Malaysia (Johor Bahru, Terengganu, and Penang). Using high-throughput amplicon sequencing and untargeted LC-MS, indoor microbiome and metabolites were characterized from classroom dust samples. Results: The study found that the prevalence of SBS symptoms was high across all three centers (51.0% to 54.6%). Environmental characteristics, including indoor NO2 and CO2 concentrations and total weight of indoor dust, were positively associated with SBS (p < 0.01, linear regression). Curtobacterium in Terengganu was negatively associated with SBS, and Clostridium perfringens in Johor Bahru was positively associated with SBS (p < 0.01, FDR < 0.05). Whereas all identified fungal taxa, including an uncharacterized uc_f_Auriculariaceae_sp., Duportella kuehneroides, and Wallemia mellicola, were positively associated with SBS (p < 0.01, FDR < 0.05) in Johor Bahru and Terengganu. Mediation analysis revealed that the adverse health effects of NO2 on SBS were partially mediated by the increased abundance of uc_f_Auriculariaceae_sp. (p < 0.05, total effect mediated 51.40%). Additionally, potential protective metabolites (S-adenosylmethionine, N-acetylserotonin, sphinganine, 4-hydroxy-2-quinolone, and (2E,4Z,8E)-Colneleic acid) were mainly derived from environmental microorganisms, conferring protective effects against nasal symptoms and tiredness. In contrast, synthetic chemicals were associated with higher SBS symptoms, inducing eye and nasal symptoms. Conclusions: This study emphasizes both the significance of fostering a balanced indoor microbiome/metabolite and the necessity to reduce exposure to deleterious substances, providing new insights for future targeted intervention strategies. Full article
(This article belongs to the Special Issue Environmental Toxicology and Metabolism)
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13 pages, 2245 KB  
Article
Isolation and Characterization of Plant-Growth-Promoting Bacteria Associated with Salvinia auriculata Aublet
by Jussara Tamires de Souza Silva Goulart, Gabriel Quintanilha-Peixoto, Bruno dos Santos Esteves, Suzane Ariadina de Souza, Pollyanna Santiago Lopes, Nathália Duarte da Silva, Julia Ribeiro Soares, Laura Mathias Barroso, Marina Satika Suzuki and Aline Chaves Intorne
Microorganisms 2024, 12(9), 1842; https://doi.org/10.3390/microorganisms12091842 - 6 Sep 2024
Cited by 5 | Viewed by 2533
Abstract
Salvinia auriculata Aublet is a floating aquatic plant, capable of absorbing the excess of nutrients and water contaminants and can be used in effluent treatment plants. The ability to survive in degraded areas may be related to the association with beneficial bacteria capable [...] Read more.
Salvinia auriculata Aublet is a floating aquatic plant, capable of absorbing the excess of nutrients and water contaminants and can be used in effluent treatment plants. The ability to survive in degraded areas may be related to the association with beneficial bacteria capable of promoting plant growth. However, little is known about the microbiota associated with this aquatic plant and its potential application to the aquatic environment. In this sense, this work aims to identify bacteria associated with S. auriculata that could be able to promote plant growth. Eighteen bacterial strains were identified by sequencing of the 16S rRNA gene, belonging to the genera Agrobacterium, Bacillus, Curtobacterium, Enterobacter, Pseudomonas, Siccibacter, and Stenotrophomonas. All isolates produced indole compounds, 12 fixed N2, and 16 solubilized phosphate. A new strain of Enterobacter (sp 3.1.3.0.X.18) was selected for inoculation into S. auriculata. For this purpose, 500 mL of nutrient solution and 1 g of the plant were used in the control and inoculated conditions. Enterobacter inoculation promoted a significant increase (p ≤ 0.05) in fresh plant biomass (17%) after 4 days of cultivation. In summary, the present study characterized 18 plant-growth-promoting bacteria isolated from S. auriculata with potential for biotechnological application, such as the production of bioinoculants or biomass resources, to protect or improve plant growth under conditions of stress. Full article
(This article belongs to the Special Issue Research on Plant—Bacteria Interactions)
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18 pages, 4764 KB  
Article
Genomics, Proteomics, and Antifungal Activity of Chitinase from the Antarctic Marine Bacterium Curtobacterium sp. CBMAI 2942
by Yesenia Melissa Santa-Cruz Vasquez, Luis Gabriel Cueva-Yesquen, Alysson Wagner Fernandes Duarte, Luiz Henrique Rosa, Rodrigo Valladão, Adriana Rios Lopes, Rafaella Costa Bonugli-Santos and Valéria Maia de Oliveira
Int. J. Mol. Sci. 2024, 25(17), 9250; https://doi.org/10.3390/ijms25179250 - 26 Aug 2024
Cited by 9 | Viewed by 3083
Abstract
This study aimed to evaluate the genomic profile of the Antarctic marine Curtobacterium sp. CBMAI 2942, as well as to optimize the conditions for chitinase production and antifungal potential for biological control. Assembly and annotation of the genome confirmed the genomic potential for [...] Read more.
This study aimed to evaluate the genomic profile of the Antarctic marine Curtobacterium sp. CBMAI 2942, as well as to optimize the conditions for chitinase production and antifungal potential for biological control. Assembly and annotation of the genome confirmed the genomic potential for chitinase synthesis, revealing two ChBDs of chitin binding (Chi C). The optimization enzyme production using an experimental design resulted in a 3.7-fold increase in chitinase production. The chitinase enzyme was identified by SDS-PAGE and confirmed through mass spectrometry analysis. The enzymatic extract obtained using acetone showed antifungal activity against the phytopathogenic fungus Aspergillus sp. series Nigri CBMAI 1846. The genetic capability of Curtobacterium sp. CBMAI 2942 for chitin degradation was confirmed through genomic analysis. The basal culture medium was adjusted, and the chitinase produced by this isolate from Antarctica showed significant inhibition against Aspergillus sp. Nigri series CBMAI 1846, which is a tomato phytopathogenic fungus. This suggests that this marine bacterium could potentially be used as a biological control of agricultural pests. Full article
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17 pages, 3978 KB  
Article
Diversity, Composition, and Specificity of the Philaenus spumarius Bacteriome
by Cristina Cameirão, Daniela Costa, José Rufino, José Alberto Pereira, Teresa Lino-Neto and Paula Baptista
Microorganisms 2024, 12(2), 298; https://doi.org/10.3390/microorganisms12020298 - 30 Jan 2024
Cited by 2 | Viewed by 3317
Abstract
Philaenus spumarius (Linnaeus, 1758) (Hemiptera, Aphrophoridae) was recently classified as a pest due to its ability to act as a vector of the phytopathogen Xylella fastidiosa. This insect has been reported to harbour several symbiotic bacteria that play essential roles in P. [...] Read more.
Philaenus spumarius (Linnaeus, 1758) (Hemiptera, Aphrophoridae) was recently classified as a pest due to its ability to act as a vector of the phytopathogen Xylella fastidiosa. This insect has been reported to harbour several symbiotic bacteria that play essential roles in P. spumarius health and fitness. However, the factors driving bacterial assemblages remain largely unexplored. Here, the bacteriome associated with different organs (head, abdomen, and genitalia) of males and females of P. spumarius was characterized using culturally dependent and independent methods and compared in terms of diversity and composition. The bacteriome of P. spumarius is enriched in Proteobacteria, Bacteroidota, and Actinobacteria phyla, as well as in Candidatus Sulcia and Cutibacterium genera. The most frequent isolates were Curtobacterium, Pseudomonas, and Rhizobiaceae sp.1. Males display a more diverse bacterial community than females, but no differences in diversity were found in distinct organs. However, the organ shapes the bacteriome structure more than sex, with the Microbacteriaceae family revealing a high level of organ specificity and the Blattabacteriaceae family showing a high level of sex specificity. Several symbiotic bacterial genera were identified in P. spumarius for the first time, including Rhodococcus, Citrobacter, Halomonas, Streptomyces, and Providencia. Differences in the bacterial composition within P. spumarius organs and sexes suggest an adaptation of bacteria to particular insect tissues, potentially shaped by their significance in the life and overall fitness of P. spumarius. Although more research on the bacteria of P. spumarius interactions is needed, such knowledge could help to develop specific bacterial-based insect management strategies. Full article
(This article belongs to the Section Systems Microbiology)
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17 pages, 3685 KB  
Article
Microbial Consortium HJ-SH with Very High Degradation Efficiency of Phenanthrene
by Rui Chen, Zhenhua Zhao, Tao Xu and Xiaoqiang Jia
Microorganisms 2023, 11(10), 2383; https://doi.org/10.3390/microorganisms11102383 - 23 Sep 2023
Cited by 16 | Viewed by 3134
Abstract
Phenanthrene (PHE) is one of the model compounds of polycyclic aromatic hydrocarbons (PAHs). In this study, a natural PHE-degrading microbial consortium, named HJ-SH, with very high degradation efficiency was isolated from soil exposed to long-term PHE contamination. The results of GC analysis showed [...] Read more.
Phenanthrene (PHE) is one of the model compounds of polycyclic aromatic hydrocarbons (PAHs). In this study, a natural PHE-degrading microbial consortium, named HJ-SH, with very high degradation efficiency was isolated from soil exposed to long-term PHE contamination. The results of GC analysis showed that the consortium HJ-SH degraded 98% of 100 mg/L PHE in 3 days and 93% of 1000 mg/L PHE in 5 days, an efficiency higher than that of any other natural consortia, and even most of the engineered strains and consortia reported so far. Seven dominating strains were isolated from the microbial consortium HJ-SH, named SH-1 to SH-7, which were identified according to morphological observation and 16S rDNA sequencing as Pseudomonas sp., Stenotrophomonas sp., Delftia sp., Pseudomonas sp., Brevundimonas sp., Curtobacterium sp., and Microbacterium sp., respectively. Among all the seven single strains, SH-4 showed the strongest PHE degradation ability, and had the biggest degradation contribution. However, it is very interesting that the microbial consortium can hold its high degradation ability only with the co-existence of all these seven single strains. Moreover, HJ-SH exhibited a very high tolerance for PHE, up to 4.5 g/L, and it can degrade some other typical organic pollutants such as biphenyl, anthracene, and n-hexadecane with the degradation ratios of 93%, 92% and 70%, respectively, under 100 mg/L initial concentration in 5 days. Then, we constructed an artificial consortium HJ-7 consisting of the seven single strains, SH-1 to SH-7. After comparing the degradation ratios, cell growth, and relative degradation rates, it was concluded that the artificial consortium HJ-7 with easier reproducibility, better application stability, and larger room for modification can largely replace the natural consortium HJ-SH. In conclusion, this research provided novel tools and new insights for the bioremediation of PHE and other typical organic pollutants using microbial consortia. Full article
(This article belongs to the Topic Environmental Bioengineering and Geomicrobiology)
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18 pages, 3190 KB  
Article
Exploring the Phytobeneficial and Biocontrol Capacities of Endophytic Bacteria Isolated from Hybrid Vanilla Pods
by Guillaume Lalanne-Tisné, Bastien Barral, Ahmed Taibi, Zana Kpatolo Coulibaly, Pierre Burguet, Felah Rasoarahona, Loic Quinton, Jean-Christophe Meile, Hasna Boubakri and Hippolyte Kodja
Microorganisms 2023, 11(7), 1754; https://doi.org/10.3390/microorganisms11071754 - 5 Jul 2023
Cited by 6 | Viewed by 3130
Abstract
In this study, 58 endophytic bacterial strains were isolated from pods of two hybrid vanilla plants from Madagascar, Manitra ampotony and Tsy taitra. They were genetically characterized and divided into four distinct phylotypes. Three were associated to genus Bacillus species, and the [...] Read more.
In this study, 58 endophytic bacterial strains were isolated from pods of two hybrid vanilla plants from Madagascar, Manitra ampotony and Tsy taitra. They were genetically characterized and divided into four distinct phylotypes. Three were associated to genus Bacillus species, and the fourth to the genus Curtobacterium. A selection of twelve strains corresponding to the identified genetic diversity were tested in vitro for four phytobeneficial capacities: phosphate solubilisation, free nitrogen fixation, and phytohormone and siderophore production. They were also evaluated in vitro for their ability to biocontrol the growth of the vanilla pathogenic fungi, Fusarium oxysporum f. sp. radicis vanillae and Cholletotrichum orchidophilum. Three bacteria of phylotype 4, m62a, m64 and m65, showed a high nitrogen fixation capacity in vitro, similar to the Pseudomonas florescens F113 bacterium used as a control (phospate solubilizing efficiency respectively 0.50 ± 0.07, 0.43 ± 0.07 and 0.40 ± 0.06 against 0.48 ± 0.03). Strain t2 related to B. subtilis showed a higher siderophore production than F113 (respectively 1.40 ± 0.1 AU and 1.2 ± 0.1 AU). The strain m72, associated with phylotype 2, showed the highest rate of production of Indole-3-acetic acid (IAA) in vitro. Bacteria belonging to the pylotype 4 showed the best capacity to inhibit fungal growth, especially the strains m62b m64 and t24, which also induced a significant zone of inhibition, suggesting that they may be good candidates for controlling fungal diseases of vanilla. This competence was highlighted with spectral imaging showing the production of lipopeptides (Iturin A2 and A3, C16 and C15-Fengycin A and C14 and C15-Surfactin) by the bacterial strains m65 confronted with the pathogenic fungi of vanilla. Full article
(This article belongs to the Section Plant Microbe Interactions)
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14 pages, 1410 KB  
Article
Plant Growth-Promoting (PGP) Traits of Endophytic Bacteria from In Vitro Cultivated Tectona grandis L.f
by Maísa de Siqueira Pinto, Laura Beatriz Inocente, Perla Novais de Oliveira, Katchen Julliany Pereira Silva and Helaine Carrer
Forests 2022, 13(10), 1539; https://doi.org/10.3390/f13101539 - 21 Sep 2022
Cited by 6 | Viewed by 3227
Abstract
Tectona grandis L.f. (teak) is a tropical tree cultivated mainly due to its resistance, valuable wood and tolerance to biotic and abiotic factors. An abundant bacteria community exists in teak tissues and knowledge of the functional roles of teak endophytic bacteria, from in [...] Read more.
Tectona grandis L.f. (teak) is a tropical tree cultivated mainly due to its resistance, valuable wood and tolerance to biotic and abiotic factors. An abundant bacteria community exists in teak tissues and knowledge of the functional roles of teak endophytic bacteria, from in vitro tissue culture, is essential for improving micropropagation techniques. In this study, we isolated endophytic bacteria with plant growth-promoting (PGP) traits from two teak clones (Proteca® A3 and E4) in calli, leaves, and stems segments in a culture medium. We analyzed colony pigmentation, gram reaction, and evaluated PGP traits (phosphorous solubilization, nitrogen fixation and indol-acetic acid production) of 54 colonies from clone A3 and 50 colonies from clone E4. A total of 35 colonies of clone A3 and 42 colonies of clone E4 were capable of fixing nitrogen. Four isolated bacteria from clone A3 were capable of solubilizing phosphorous (P-Ca3(PO4)2), while no strain of E4 clone showed that capacity. Furthermore, 49 endophytic bacteria from clone A3 showed capacity to synthesize indol-acetic acid, while only 4 bacteria from the E4 clone presented that characteristic. We also identified six teak endophytic bacteria, by analysis of the 16S-23S rDNA intergenic spacer region, showing high identity with the genera Curtobacterium sp., Ochrobactrum sp., and Bacillus spp. Therefore, we demonstrate here that the abundant bacterial community existing in teak tissues, including those of in vitro cultivated plants, have PGP traits that can be further harnessed for preparation of bioformulations, for example. Our findings open the possibility for studying these isolated endophytic bacteria more closely in order to understand their association with teak growth. Full article
(This article belongs to the Section Forest Ecophysiology and Biology)
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13 pages, 2099 KB  
Article
The Influence of the Grapevine Bacterial and Fungal Endophytes on Biomass Accumulation and Stilbene Production by the In Vitro Cultivated Cells of Vitis amurensis Rupr.
by Olga A. Aleynova, Andrey R. Suprun, Nikolay N. Nityagovsky, Alexandra S. Dubrovina and Konstantin V. Kiselev
Plants 2021, 10(7), 1276; https://doi.org/10.3390/plants10071276 - 23 Jun 2021
Cited by 42 | Viewed by 4577
Abstract
Plant endophytes are known to alter the profile of secondary metabolites in plant hosts. In this study, we identified the main bacterial and fungal representatives of the wild grape Vitis amurensis Rupr. microbiome and investigated a cocultivation effect of the 14 endophytes and [...] Read more.
Plant endophytes are known to alter the profile of secondary metabolites in plant hosts. In this study, we identified the main bacterial and fungal representatives of the wild grape Vitis amurensis Rupr. microbiome and investigated a cocultivation effect of the 14 endophytes and the V. amurensis cell suspension on biomass accumulation and stilbene biosynthesis. The cocultivation of the V. amurensis cell culture with the bacteria Agrobacterium sp., Bacillus sp., and Curtobacterium sp. for 2 weeks did not significantly affect the accumulation of cell culture fresh biomass. However, it was significantly inhibited by the bacteria Erwinia sp., Pantoea sp., Pseudomonas sp., and Xanthomonas sp. and fungi Alternaria sp., Biscogniauxia sp., Cladosporium sp., Didymella sp. 2, and Fusarium sp. Cocultivation of the grapevine cell suspension with the fungi Didymella sp. 1 and Trichoderma sp. resulted in cell death. The addition of endophytic bacteria increased the total stilbene content by 2.2–5.3 times, while the addition of endophytic fungi was more effective in inducing stilbene accumulation by 2.6–16.3 times. The highest content of stilbenes in the grapevine cells cocultured with endophytic fungi was 13.63 and 13.76 mg/g of the cell dry weight (DW) after cultivation with Biscogniauxia sp. and Didymella sp. 2, respectively. The highest content of stilbenes in the grapevine cells cocultured with endophytic bacteria was 4.49 mg/g DW after cultivation with Xanthomonas sp. The increase in stilbene production was due to a significant activation of phenylalanine ammonia lyase (PAL) and stilbene synthase (STS) gene expression. We also analyzed the sensitivity of the selected endophytes to eight antibiotics, fluconazole, and trans-resveratrol. The endophytic bacteria were sensitive to gentamicin and kanamycin, while all selected fungal strains were resistant to fluconazole with the exception of Cladosporium sp. All endophytes were tolerant of trans-resveratrol. This study showed that grape endophytes stimulate the production of stilbenes in grape cell suspension, which could further contribute to the generation of a new stimulator of stilbene biosynthesis in grapevine or grape cell cultures. Full article
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28 pages, 6493 KB  
Article
Microbial Diversity of Psychrotolerant Bacteria Isolated from Wild Flora of Andes Mountains and Patagonia of Chile towards the Selection of Plant Growth-Promoting Bacterial Consortia to Alleviate Cold Stress in Plants
by Paulina Vega-Celedón, Guillermo Bravo, Alexis Velásquez, Fernanda P. Cid, Miryam Valenzuela, Ingrid Ramírez, Ingrid-Nicole Vasconez, Inaudis Álvarez, Milko A. Jorquera and Michael Seeger
Microorganisms 2021, 9(3), 538; https://doi.org/10.3390/microorganisms9030538 - 5 Mar 2021
Cited by 80 | Viewed by 10156
Abstract
Cold stress decreases the growth and productivity of agricultural crops. Psychrotolerant plant growth-promoting bacteria (PGPB) may protect and promote plant growth at low temperatures. The aims of this study were to isolate and characterize psychrotolerant PGPB from wild flora of Andes Mountains and [...] Read more.
Cold stress decreases the growth and productivity of agricultural crops. Psychrotolerant plant growth-promoting bacteria (PGPB) may protect and promote plant growth at low temperatures. The aims of this study were to isolate and characterize psychrotolerant PGPB from wild flora of Andes Mountains and Patagonia of Chile and to formulate PGPB consortia. Psychrotolerant strains were isolated from 11 wild plants (rhizosphere and phyllosphere) during winter of 2015. For the first time, bacteria associated with Calycera, Orites, and Chusquea plant genera were reported. More than 50% of the 130 isolates showed ≥33% bacterial cell survival at temperatures below zero. Seventy strains of Pseudomonas, Curtobacterium, Janthinobacterium, Stenotrophomonas, Serratia, Brevundimonas, Xanthomonas, Frondihabitans, Arthrobacter, Pseudarthrobacter, Paenarthrobacter, Brachybacterium, Clavibacter, Sporosarcina, Bacillus, Solibacillus, Flavobacterium, and Pedobacter genera were identified by 16S rRNA gene sequence analyses. Ten strains were selected based on psychrotolerance, auxin production, phosphate solubilization, presence of nifH (nitrogenase reductase) and acdS (1-aminocyclopropane-1-carboxylate (ACC) deaminase) genes, and anti-phytopathogenic activities. Two of the three bacterial consortia formulated promoted tomato plant growth under normal and cold stress conditions. The bacterial consortium composed of Pseudomonas sp. TmR5a & Curtobacterium sp. BmP22c that possesses ACC deaminase and ice recrystallization inhibition activities is a promising candidate for future cold stress studies. Full article
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