Search Results (18)

Heat stress, intensified by global warming, is an increasing challenge for the growth and yield of the economically important crop Brassica rapa subsp. chinensis (NHCC). The Heat Shock Protein 70 (HSP70) family plays an important role in plant thermotolerance, but its molecular characteristics and regulatory mechanisms in this subspecies have not been investigated. Herein, we conducted a comprehensive genomic and transcriptional profiling of the BrcHSP70 gene lineage and revealed a total of 31 members. Our phylogenetic analysis revealed a closer evolutionary relationship to genes from B. rapa ssp. pekinensis (HCC) than to those found in Arabidopsis. Genomic analysis demonstrated that segmental duplication, with eight pairs identified, was the primary driving force for the family’s expansion, rather than tandem duplication. Additionally, the BrcHsp70 gene promoters are enriched with cis-acting elements responsive to phytohormones (particularly ABA) and abiotic stresses. Critically, under 38 °C high-temperature stress, the heat-resistant variety ‘SHI’ and heat-sensitive variety ‘Aijiaohuang’ exhibited distinct expression patterns, identifying key candidate genes implicated in thermotolerance. These results elucidate the evolutionary and regulatory features of the HSP70 family in NHCC, providing a new understanding of the molecular mechanisms of plant heat tolerance. Full article

Clubroot, caused by Plasmodiophora brassicae Woronin, poses a major threat to Chinese cabbage (Brassica rapa subsp. pekinensis) production worldwide, significantly impacting crop yield, quality, and economic value. Biological control represents a promising approach since it is non-toxic and eco-friendly, and it reduces the risk of pathogen resistance development. In this study, our objective was to screen for actinomycetes that can effectively inhibit clubroot. We screened 13 actinomycete strains, identifying 2, XDS3-6 and CD1-1, with substantial in vivo inhibitory effects, achieving infection suppression rates above 64% against P. brassicae. Phylogenetic analysis classified XDS3-6 and CD1-1 as Streptomyces virginiae and Streptomyces cinnamonensis, respectively. Both strains exhibited protease and glucanase production capabilities, essential for pathogenic suppression. Additionally, these strains induced host defense responses, as evidenced by increased jasmonic acid (JA) and salicylic acid (SA) accumulation and elevated activities of defense-related enzymes. Colonization studies of XDS3-6 and CD1-1 mutant strains in cabbage roots indicated sustained root colonization, with peak colony-forming units (CFUs) at 20 days post-inoculation, reaching 11.0 × 10⁴ CFU/g and 8.5 × 10⁴ CFU/g, respectively, and persisting for at least 30 days. Overall, these findings underscore the potential of Streptomyces strains XDS3-6 and CD1-1 as effective biocontrol agents, providing a theoretical foundation for their application in managing clubroot in Chinese cabbage. Full article

The effect of crop rotation on soil-borne diseases is a representative case of plant–soil feedback in the sense that plant disease resistance is influenced by soils with different cultivation histories. This study examined the microbial mechanisms inducing the differences in the clubroot (caused by Plasmodiophora brassicae pathogen) damage of Chinese cabbage (Brassica rapa subsp. pekinensis) after the cultivation of different preceding crops. It addresses two key questions in crop rotation: changes in the soil bacterial community induced by the cultivation of different plants and the microbial mechanisms responsible for the disease-suppressive capacity of Chinese cabbage. Twenty preceding crops from different plant families showed significant differences in the disease damage, pathogen density, and bacterial community composition of the host plant. Structural equation modelling revealed that the relative abundance of four key bacterial orders in Chinese cabbage roots can explain 85% and 70% of the total variation in pathogen density and disease damage, respectively. Notably, the relative dominance of Bacillales and Rhizobiales, which have a trade-off relationship, exhibited predominant effects on pathogen density and disease damage. The disease-suppressive soil legacy effects of preceding crops are reflected in compositional changes in key bacterial orders, which are intensified by the bacterial community network. Full article

The exploration of the impact of different spatial scales on the low-altitude remote sensing identification of Chinese cabbage (Brassica rapa subsp. Pekinensis) plants offers important theoretical reference value in balancing the accuracy of plant identification with work efficiency. This study focuses on Chinese cabbage plants during the rosette stage; RGB images were obtained by drones at different flight heights (20 m, 30 m, 40 m, 50 m, 60 m, and 70 m). Spectral sampling analysis was conducted on different ground backgrounds to assess their separability. Based on the four commonly used vegetation indices for crop recognition, the Excess Green Index (ExG), Red Green Ratio Index (RGRI), Green Leaf Index (GLI), and Excess Green Minus Excess Red Index (ExG-ExR), the optimal index was selected for extraction. Image processing methods such as frequency domain filtering, threshold segmentation, and morphological filtering were used to reduce the impact of weed and mulch noise on recognition accuracy. The recognition results were vectorized and combined with field data for the statistical verification of accuracy. The research results show that (1) the ExG can effectively distinguish between soil, mulch, and Chinese cabbage plants; (2) images of different spatial resolutions differ in the optimal type of frequency domain filtering and convolution kernel size, and the threshold segmentation effect also varies; (3) as the spatial resolution of the imagery decreases, the optimal window size for morphological filtering also decreases, accordingly; and (4) at a flight height of 30 m to 50 m, the recognition effect is the best, achieving a balance between recognition accuracy and coverage efficiency. The method proposed in this paper is beneficial for agricultural growers and managers in carrying out precision planting management and planting structure optimization analysis and can aid in the timely adjustment of planting density or layout to improve land use efficiency and optimize resource utilization. Full article

Chinese cabbage, Brassica rapa L. subsp. pekinensis is a crucial and extensively consumed vegetable in the world, especially Eastern Asia. The market demand for this leafy vegetable increases year by year, resulting in multiple challenges for agricultural researchers worldwide. Multi-omic approaches and the integration of functional genomics helps us understand the relationships between Chinese cabbage genomes and phenotypes under specific physiological and environmental conditions. However, challenges exist in integrating multi-omics for the functional analysis of genes and for developing potential traits for Chinese cabbage improvement. However, the panomics platform allows for the integration of complex omics, enhancing our understanding of molecular regulator networks in Chinese cabbage agricultural traits. In addition, the agronomic features of Chinese cabbage are significantly impacted by the environment. The expression of these agricultural features is tightly regulated by a combination of signals from both the internal regulatory network and the external growth environment. To comprehend the molecular process of these characteristics, it is necessary to have a prior understanding of molecular breeding for the objective of enhancing quality. While the use of various approaches in Chinese cabbage is still in its early stages, recent research has shown that it has the potential to uncover new regulators both rapidly and effectively, leading to updated regulatory networks. In addition, the utilization of the efficient transformation technique in conjunction with gene editing using CRISPR/Cas9 will result in a reduction in time requirements and facilitate a more precise understanding of the role of the regulators. Numerous studies about Chinese cabbage have been conducted in the past two decades, but a comprehensive review about its genome still limited. This review provides a concise summary of the latest discoveries in genomic research related to Brassica and explores the potential future developments for this species. Full article

The development of Chinese cabbage (Brassica rapa subsp. pekinensis) varieties that are resilient to climate change is becoming increasingly critical. Our study focused on developing stress-tolerant Chinese cabbage during the summer season to minimize the impacts of global climate change. We evaluated 52 Chinese cabbage accessions grown in the field during the late spring–summer season in Korea. Various phenotypic data of Chinese cabbage in adverse environments were collected from field data. In addition to field screening, we used a controlled-environment chamber to observe the direct impact of heat on young plants, particularly in the root area. A genome-wide association study was conducted using two sets of phenotypic data collected from both chamber and field studies and genotype data acquired from GBS analyses. A total of 57 SNPs distributed across all 10 B. rapa chromosomes were selected to be highly related to the target traits. Several candidate genes were annotated using the flanking sequences of these SNPs. The study revealed that most of the annotated genes seemed to be highly connected with the function of the heat stress response. Other genes were also found to be related to the environmental stress response and flowering. These candidate SNPs and genes can provide valuable tools for breeders to develop summer stress-tolerant Chinese cabbage varieties. Full article

Climate change exacerbates drought, globally impacting crop production and necessitating the adoption of sustainable strategies. This study investigates the potential synergistic effects of salicylic acid (SA) and Bacillus butanolivorans KJ40 (KJ40) on napa cabbage (Brassica rapa subsp. pekinensis) under water-deficit stress conditions by watering withheld for five days. Results demonstrate that the combined application of KJ40 and SA, particularly at concentrations of 0.5 mM and 1 mM, significantly enhances plant growth and mitigates the negative impacts of water deficit. Moreover, the combination treatment with SA (0.5 mM) and KJ40 (1 × 10⁸ cells/mL) reduces lipid oxidation and enhances antioxidant enzyme activity, indicating improved plant stress tolerance. Analysis of soil microbial profiles reveals alterations in metabolic activity and substrate utilization patterns, suggesting potential changes in rhizosphere dynamics. Additionally, this study examines the impact of SA on KJ40 population dynamics in soil, revealing concentration-dependent effects on bacterial survival. Overall, the combination of KJ40 and SA was effective in mitigating water-deficit stress in napa cabbage. These findings highlight the combination as a novel synergistic strategy to enhance plant resilience to water-deficit stress, offering insights into plant–microbe interactions and soil ecosystem dynamics. Full article

Climate change has increased variable weather patterns that affect plants. To address these issues, we developed a microbial biocontrol agent against drought stress in kimchi cabbage (Brassica rapa L. subsp. pekinensis). We selected three bacterial strains (Leifsonia sp. CS9, Bacillus toyonensis TSJ7, and Lysinibacillus capsici TT41) because they showed a survival rate of up to 50% and good growth rate when treated with 30% PEG 6000. The three strains were treated with kimchi cabbage to confirm their enhanced drought stress resistance under non-watering conditions. Among the three strains, the TT41 treated group showed a significant increase in various plant parameters compared with the negative control on the 7th day. We performed extensive profiling of primary and secondary metabolites from kimchi cabbage and the TT41 strain. Multivariate and pathway analyses revealed that only the TT41 group clustered with the well-watered group and showed almost the same metabolome on the 7th day. When treated with TT41, lactic acid was identified as an indicator metabolite that significantly improved drought stress tolerance. Furthermore, lactic acid treatment effectively induced drought stress tolerance in kimchi cabbage, similar to that achieved with the TT41 strain. Full article

Salinity poses a significant threat to plant growth through induction of osmotic and ionic stress and disruption of nutrient absorption. Biostimulants derived from agricultural waste offer a sustainable solution to alleviate salt-induced damage to plants and contribute to a circular and sustainable economy. In this study, we applied a combination of myo-inositol and corn steep liquor from waste sources to seedling cabbage (Brassica rapa subsp. pekinensis) and investigated their effects on plant growth under NaCl-simulated salt stress. Different concentrations of myo-inositol and corn steep liquor were applied to the roots, revealing that 150 mM NaCl significantly inhibited the growth and physiological metabolism of cabbage seedlings. Substrate application of myo-inositol, corn steep liquor, and their combination materials increased biomass, photosynthetic pigments, soluble sugars, soluble proteins, and the contents of K⁺, Ca²⁺, and Mg²⁺ in cabbage under salt stress conditions, while reducing malondialdehyde, electrolyte leakage, Na+ content, and the ratios of Na⁺/K⁺, Na⁺/Ca²⁺, and Na⁺/Mg²⁺. Therefore, root application of myo-inositol, corn steep liquor, and myo-inositol–corn steep liquor combination materials enhanced photosynthesis and enhanced cabbage salt stress resistance by maintaining cell osmotic and ion balance. The most pronounced positive effects were observed in the treatment with 0.1 mL L⁻¹ corn steep liquor +288 mg L⁻¹ myo-inositol. This study provides a theoretical basis and technical guidance for the combined utilization of myo-inositol and corn steep liquor to boost early growth and salt resistance in crops. Full article

HD-Zip, a special class of transcription factors in high plants, has a role in plant development and responding to external environmental stress. Heat stress has always been an important factor affecting plant growth, quality, and yield. Carotenoid content is also an important factor affecting the color of the inner leaf blades of Chinese cabbage. In this study, the genomes of three Brassicaceae plants were selected: Chinese cabbage (Brassica rapa subsp. pekinensis), Brassica oleracea, and Brassica napus. We identified 93, 96, and 184 HD-Zip genes in the B. rapa, B. oleracea, and B. napus, respectively. The HD-Zip gene family was classified into four subfamilies based on phylogeny: I, II, III, and IV;. The results of cis-acting element analysis suggested that HD-Zip family genes may participate in various biological processes, such as pigment synthesis, cell cycle regulation, defense stress response, etc. Conserved motifs prediction revealed that three motifs exist among the four HD-Zip gene families and that different motifs exhibit significant effects on the structural differences in HD-Zips. Synteny, Ks, and 4DTv results displayed that genome-wide triplication events act in HD-Zip gene family expansion. Transcriptome data showed that 18 genes responded (>1.5-fold change) to heat stress in Chinese cabbage, and 14 of 18 genes were from the HD-Zip I subfamily. Three genes had up-regulation, and eight genes had down-regulation in high-carotenoid-content Chinese cabbage. The BraA09g011460.3C expression level was up-regulated after heat stress treatment and significantly reduced in varieties with high carotenoid content, indicating its potential for heat stress tolerance and carotenoid content regulation. This study provided important gene resources for the subsequent breeding of Chinese cabbage. Full article

Glucosinolates are secondary plant metabolites that are part of the plant’s defense system against pathogens and pests and are activated via enzymatic degradation by thioglucoside glucohydrolases (myrosinases). Epithiospecifier proteins (ESPs) and nitrile-specifier proteins (NSPs) divert the myrosinase-catalyzed hydrolysis of a given glucosinolate to form epithionitrile and nitrile rather than isothiocyanate. However, the associated gene families have not been explored in Chinese cabbage. We identified three ESP and fifteen NSP genes randomly distributed on six chromosomes in Chinese cabbage. Based on a phylogenetic tree, the ESP and NSP gene family members were divided into four clades and had similar gene structure and motif composition of Brassica rapa epithiospecifier proteins (BrESPs) and B. rapa nitrile-specifier proteins (BrNSPs) in the same clade. We identified seven tandem duplicated events and eight pairs of segmentally duplicated genes. Synteny analysis showed that Chinese cabbage and Arabidopsis thaliana are closely related. We detected the proportion of various glucosinolate hydrolysates in Chinese cabbage and verified the function of BrESPs and BrNSPs in glucosinolate hydrolysis. Furthermore, we used quantitative RT-PCR to analyze the expression of BrESPs and BrNSPs and demonstrated that these genes responded to insect attack. Our findings provide novel insights into BrESPs and BrNSPs that can help further promote the regulation of glucosinolate hydrolysates by ESP and NSP to resist insect attack in Chinese cabbage. Full article

Chinese cabbage (Brassica rapa L. subsp. pekinensis) is one of the vegetables with the largest cultivated area in China and has been a great addition to the daily diet of Chinese people. A genetic map has been constructed in our previous study using the F₂ population of two inbred lines of Chinese cabbage, namely “G291” (a hairy line) and “ZHB” (a hairless line), based on which a candidate gene related to trichome traits was identified on chromosome A06 with a phenotypic variance of 47%. A molecular marker was found to co-segregate with the trichome traits of the F₂ population, which is in the 5′-flanking region of BrGL1, and a corresponding patent has been granted (NO. CN 108545775 B). Transcriptome analysis was carried out on the cotyledon, the first true leaf and the leaf closest to each inflorescence of F₂ individuals of “G291 × ZHB” with or without trichomes, respectively. Ten pathways, including 189 DEGs, were identified to be involved in the development of trichomes in Chinese cabbage, which may be specifically related to the development of leaf trichomes. Most of the pathways were related to the biosynthesis of the secondary metabolites, which may help plants to adapt to the ever-changing external environment. DEGs also enriched the “plant-pathogen interaction” pathway, which is consistent with the conclusion that trichomes are related to the disease resistance of plants. Our study provides a basis for future research on the occurrence and development of trichomes in Chinese cabbage. Full article

Clubroot disease, caused by Plasmodiophora brassicae, is a serious threat to Chinese cabbage (Brassica rapa subsp. pekinensis) production, which results in extensive yield losses. At present, clubroot control mainly depends upon pesticides, which provoke food-safety concerns, and the application of sole biocontrol agents cannot successfully control the disease. In this study, we investigated the effect of Bacillus cereus BT-23, Lysobacter antibioticus 13-6, and Lysobacter capsici ZST1-2 as sole strains, intra-/inter-genus co-culture, and microbial consortia on clubroot disease, plant growth, and rhizosphere bacterial diversity in a field experiment. The microbial consortia efficiently controlled the incidence of clubroot disease, with a biocontrol effect of about 65.78%, by decreasing the soil acidity and enhancing the yield (17,662.49 kg/acre). The high-throughput sequencing results demonstrated that the phyla Proteobacteria and Bacteroidetes were present in high relative abundance in the rhizosphere soil of the Chinese cabbage. Furthermore, Firmicutes was found as a unique phylum in the rhizosphere soil of CK-H and T1-T7, except for CK-D. The application of microbial consortia recovers the imbalance in indigenous microbial communities. Therefore, we conclude that microbial consortia can reduce the clubroot incidence in Chinese cabbage by decreasing the soil acidity and altering the diversity and structure of rhizosphere bacterial communities. This study highlights the potential of microbial consortia as an engineering tool to control devastating soilborne diseases in commercial crops. Full article

Some intensive farmers tend to expect short-term beneficial effects by applying soil amendments, but inconsistent fertilization practices are often conducted, causing economic losses and environmental problems. This study aimed at investigating the short-term application effects of different soil amendments on soil organic carbon (SOC) fractions, biogeochemical properties, and crop performance for finding the best land management approach using one-year field trial growing Chinese cabbages. This filed experiment was conducted in 2020 and included eight fertilizer treatments: control (w/o fertilizers), chemical fertilizer (CF), manure compost (MC), double MC amount (2MC), CF + MC, CF + rice husk (RH), MC + RH, and CF + MC + RH. As a result, the concentrations of recalcitrant to labile C forms, including Loss-On-Ignition C (LOIC), Walkley-Black C, permanganate oxidizable C (POXC), and microbial biomass C, were the highest in a mixture of MC and RH and 2MC. Additionally, the treatment with the largest difference from the control in key soil parameters was 2MC: bulk density (10%), total N (30%), available P (186%), and CO₂ (433%) and N₂O (825%) emissions, followed by MC + RH. Moreover, more than 20% higher fresh weight (FW) of cabbage was found in 2MC and MC + RH than in the control. Therefore, these two organic amendments appeared to benefit SOC storage and overall soil biogeochemical processes, contributing to higher biomass crop production. Moreover, LOIC significantly correlated to bulk density, available P and K, and FW, while POXC significantly correlated to N concentration in plants, indicating the short-term fertilization effects on the status of SOC fractions and the qualities of soil and plant by applying soil amendments. Overall, our findings suggest that applying MC + RH would be an alternative to replace the conventional farming practices for promoting soil quality and crop performance, but further studies to sustain the application effects of this amendment should be monitored for longer durations. Full article

The effects of ozone combined with other environmental factors remain an important topic of the research, both in connection with climate change and the possibility of using modern solutions in horticulture. In our experiment, we compared the influence of ozone (100 ppb) on photosynthesis and changes in the pigment composition of Chinese cabbage (Brassica rapa subsp. pekinensis) leaves depending on the spectral composition of light. We used white LED light (WL), a combination of red + green + blue (RGBL) with a dominant red component and white +blue (WBL) with a dominant blue component in comparison with the classic sodium lamp lighting (yellow light—YL). The values of the parameters describing the light-dependent phase of photosynthesis and the parameters of the gas exchange, as well as non-photosynthesis pigment contents, show that the spectral composition strongly differentiates the response of Chinese cabbage leaves to ozone. In general, the efficiency of photochemical reactions was the highest in YL, but after O₃ fumigation, it decreased. In plants growing in WL and WBL, the increase of O₃ concentration stimulated light photosynthesis reactions and led to the enhancement of transpiration, stomatal conductance and intracellular CO₂ concentration. Changes in photosynthetic activity were accompanied by an increase in the content of anthocyanins and flavonols. Full article