Search Results (214)

The ecological impact of crown-of-thorns starfish (CoTS; Acanthaster spp.) on coral reefs is intrinsically linked to their feeding behaviour. Management thresholds designed to mitigate coral loss driven by elevated densities of crown-of-thorns starfish rely on accurate estimates of individual feeding rates. In this study, structure-from-motion photogrammetry and intensive tracking of adult Pacific CoTS over an extended survey period were used to generate three-dimensional, high-resolution estimates of daily feeding rates. Our findings revealed substantial variation in the areal extent of coral consumed, both across consecutive days and among individuals. Notably, CoTS did not feed consistently; feeding occurred on 65% of observation days, with 2–3 days periods of inactivity common. Despite this variability, mean daily feeding rates aligned with previous studies (1.35 coral colonies d⁻¹; 198.4 cm² day⁻¹ planar area, and 998.83 cm² day⁻¹ three-dimensional surface area). Across all tracked individuals (n = 8), feeding was recorded on 17 coral genera; however, Acropora alone accounted for 51% of colonies consumed and contributed 82% of the total three-dimensional surface area ingested during the survey period. This highlights the disproportionately large feeding yield derived from Acropora-dominated diets and raises important questions about how future declines in Acropora cover may impact CoTS feeding success and energetic intake. Full article

Snails at hydrothermal vents rely on symbiotic bacteria for nutrition; however, the specifics of these associations in adapting to such extreme environments remain underexplored. This study investigated the community structure and metabolic potential of bacteria associated with two Indian Ocean vent snails, Chrysomallon squamiferum and Gigantopelta aegis. Using microscopic, phylogenetic, and metagenomic analyses, this study examines bacterial communities inhabiting the foot and gland tissues of these snails. G. aegis exhibited exceptionally low bacterial diversity (Shannon index 0.14–0.18), primarily Gammaproteobacteria (99.9%), including chemosynthetic sulfur-oxidizing Chromatiales using Calvin–Benson–Bassham cycle and methane-oxidizing Methylococcales in the glands. C. squamiferum hosted significantly more diverse symbionts (Shannon indices 1.32–4.60). Its black variety scales were dominated by Campylobacterota (67.01–80.98%), such as Sulfurovum, which perform sulfur/hydrogen oxidation via the reductive tricarboxylic acid cycle, with both Campylobacterota and Gammaproteobacteria prevalent in the glands. The white-scaled variety of C. squamiferum had less Campylobacterota but a higher diversity of heterotrophic bacteria, including Delta-/Alpha-Proteobacteria, Bacteroidetes, and Firmicutes (classified as Desulfobacterota, Pseudomomonadota, Bacteroidota, and Bacillota in GTDB taxonomy). In C. squamiferum, Gammaproteobacteria, including Chromatiales, Thiotrichales, and a novel order “Endothiobacterales,” were chemosynthetic, capable of oxidizing sulfur, hydrogen, or iron, and utilizing the Calvin–Benson–Bassham cycle for carbon fixation. Heterotrophic Delta- and Alpha-Proteobacteria, Bacteroidetes, and Firmicutes potentially utilize organic matter from protein, starch, collagen, amino acids, thereby contributing to the holobiont community and host nutrition accessibility. The results indicate that host species and intra-species variation, rather than the immediate habitat, might shape the symbiotic microbial communities, crucial for the snails’ adaptation to vent ecosystems. Full article

A moon jellyfish (Aurelia aurita) is a representative of the phylum Cnidaria, commonly found in the northern seas of the globe. The regenerative abilities of cnidarians have recently been associated with extracellular vesicles (EVs) secreted by these organisms. In this study, a method for the isolation of EVs from the oral arms of A. aurita is presented. The methodology includes differential centrifugation, size-exclusion chromatography, and ultrafiltration. The isolates were characterized with tunable resistive pulse sensing, cryogenic transmission electron microscopy, capillary electrophoresis (CE), and electrophoretic light scattering (ELS). Small (<150 nm in diameter) EVs were abundant in the isolates. The EVs were found to carry nucleic acids, indicating their role in signaling. Additionally, the difference in zeta potential values measured with ELS and CE indicates high glycation in the vesicles analyzed. Although the method developed was effective in isolating EVs from small sample volumes (0.5 mL), the EV yield was insufficient for omics analysis. Thus, the scaling up of the isolation process is required for comprehensive biochemical analysis and biological activity assessment in A. aurita-derived EVs. Full article

Aquaculture is a crucial food-producing sector that can supply more essential nutrients to nourish the growing human population. However, it faces challenges, including limited water quality and space competition. These constraints have led to the intensification of culture systems for more efficient resource use while maintaining or increasing production levels. However, intensification introduces stress risks to cultured organisms by, for instance, overcrowding, waste accumulation, and water quality deterioration, which can negatively affect the growth, health, and immunity of animals and cause diseases. Additionally, environmental changes due to climate and anthropogenic activities further intensify the environmental stress for aquaculture organisms, including crustaceans. Shrimp are one of the most widely cultured and consumed farmed crustacea. Relative to aquatic vertebrates such as fish, the physiology of crustaceans has simpler physiological structures, as they lack a spinal cord. Consequently, their stress response mechanisms follow a single pathway, resulting in less complex responses to stress exposure compared to those of fish. While stress is considered a primary factor influencing the growth, health, and immunity of shrimp, comprehensive research on crustacean stress responses remains limited. Understanding the stress response at the organismal and cellular levels is essential to identify sensitive and effective stress biomarkers which can inform the development of targeted intervention strategies to mitigate stress. This review provides a comprehensive overview of the physiological changes that occur in crustaceans under stress, including hormonal, metabolic, hematological, hydromineral, and phenotypic alterations. By synthesizing current knowledge, this article aims to bridge existing gaps and provide insights into the stress response mechanisms, paving the way for advancements in crustacean health management. Full article

Hypoxia represents a critical environmental stressor in aquaculture, significantly disrupting aquatic organisms’ physiological homeostasis and thereby constraining the sustainable development of aquaculture industries. To elucidate the mechanisms underlying hypoxia-induced metabolic regulation in aquatic species, this study employed hybrid yellow catfish (Pelteobagrus vachelli ♀ × Leiocassis longirostris ♂) as a model organism to systematically investigate the multidimensional physiological responses in brain, liver, and muscle tissues under hypoxia (0.7 mg/L) and reoxygenation (7.0 mg/L) conditions. Through qRT-PCR and enzymatic activity analyses, we comprehensively assessed molecular alterations associated with oxygen sensing (HIF-1α gene), respiratory metabolism (PFKL, HK1, PK, CS, and LDHA genes and corresponding enzyme activities), oxidative stress (SOD1, SOD2, GSH-PX, and CAT genes, along with LPO, MDA, PCO, T-SOD, GSH-PX, and CAT levels), apoptosis (Caspase-3, Bax/Bcl-2), inflammatory response (IL-1β, IKKβ), and mitochondrial function (COXIV, PGC-1α, ATP5A1). Key findings demonstrated pronounced HIF-1α activation across all examined tissues. Hepatic tissues exhibited adaptive metabolic reprogramming from aerobic to anaerobic metabolism, whereas cerebral tissues displayed suppressed anaerobic glycolysis during prolonged hypoxia, and muscular tissues manifested concurrent inhibition of both glycolytic and aerobic metabolic pathways. Notably, skeletal muscle exhibited marked oxidative stress accompanied by mitochondrial dysfunction, exacerbated inflammation, and apoptosis activation during hypoxia/reoxygenation cycles. This study delineates tissue-specific adaptive mechanisms to hypoxia in yellow catfish, providing theoretical foundations for both piscine hypoxia physiology research and aquaculture practices. Full article

The mismatch between the rapid expansion of breeding scale and outdated techniques has hindered the development of the sea cucumber (A. japonicus) industry. Our previous work revealed that ecological seedling breeding can produce red-colored A. japonicus, a phenotype not observed in traditional artificial breeding, where individuals are typically green. To investigate the molecular and genetic basis of this novel red coloration, we compared the growth conditions of red sea cucumbers and green sea cucumbers, as well as the differences in the pigment composition, gene expression and metabolites of their body walls. Red individuals showed higher body length and weight, and elevated levels of astaxanthin, lutein, canthaxanthin, and β-carotene in the body wall. Transcriptomic and metabolomic analyses identified differentially expressed genes and metabolites associated with pigmentation. In particular, FMO2 and WDR18, involved in the cytochrome P450 drug metabolism pathway, were significantly upregulated in red individuals and are known to play roles in pigment biosynthesis and light signal perception. Key metabolites such as astaxanthin and fucoxanthin were implicated in body color formation. Moreover, genes in the arachidonic acid metabolism pathway were highly expressed, suggesting that dietary factors may contribute to pigment synthesis and accumulation. These findings provide novel insights into the mechanisms underlying body color variation in A. japonicus and offer potential for improved breeding strategies. Full article

Marine environmental pollution has been rapidly increasing in Arctic waters, and the release and bioaccumulation of trace elements in Arctic marine species may pose significant risks to both ecosystem health and human well-being. As a top predator, the Greenland shark is an ideal sentinel species for ecotoxicological studies in this region. In this study, trace element analyses were conducted on various tissues from two Greenland sharks—a male and a female—collected in Kulusuk (southeastern Greenland). Eleven trace elements (Mn55, Co59, Cu63, Zn64, As75, Se82, Rb85, Mo98, Ag107, Cd112, and Pb208) were measured in different skin samples from both specimens and in the muscle and fat of the female using an Inductively Coupled Plasma Mass Spectrometer (ICP-MS). Principal Component Analyses (PCAs) revealed sex-related differences in skin bioaccumulation patterns, likely due to sampling of different skin regions. Notably, skin tissues from both sharks showed the highest concentration of trace elements, especially for As75 (9.39–41.13 ppm) and Zn64 (24.34–50.99 ppm) and with the exception of Ag107. These findings suggest that environmental exposure may play a more significant role than dietary intake in trace element accumulation in this area. This study represents the first investigation of trace element bioaccumulation in Greenland sharks from Kulusuk. While the results offer important preliminary insights into the species’ ecotoxicology, further research involving more specimens and tissues is needed to confirm these trends. These initial findings contribute to filling key data gaps and have implications for both environmental monitoring and public health within the Greenlandic community. Full article

This study covers a large area around the Kuril Islands, one of the longest island arcs in the world, crossing several climatic zones, which allows for observations of longitudinal shifts in planktonic species’ ranges following shifts in the boundaries between the climatic zones. We analyzed spatial and vertical changes in the zooplankton community structure and the associated environmental factors from Yuri Island to Onekotan Island both in Pacific and Sea of Okhotsk waters, which are influenced by cold and warm water masses. Species diversity in the Pacific waters was higher than in the Sea of Okhotsk waters, with a peak of diversity recorded from warm waters off the southern Kuril Islands associated with the Soya Current and the Kuroshio Extension. Zooplankton abundance and biomass above the thermocline were higher in the Pacific waters compared to the Sea of Okhotsk area, showing a tendency to increase with higher latitude and lower water temperatures and generally to decline with depth. The water temperature and salinity below the thermocline were the most important explanatory environmental variables responsible for zooplankton abundance variations. The distribution patterns of the large-sized copepods were strongly correlated with temperature and salinity, as well as with dissolved oxygen and chlorophyll a levels. In contrast, small-sized copepods were adapted to or thrived in the areas with elevated temperature and salinity values and a reduced chlorophyll a concentration. Full article

The selection of environmental variables with different spatial resolutions is a critical factor affecting the accuracy of machine learning-based fishery forecasting. In this study, spring-season survey data of Decapterus macarellus in the South China Sea from 2016 to 2024 were used to construct six machine learning models—decision tree (DT), extra trees (ETs), K-Nearest Neighbors (KNN), light gradient boosting machine (LGBM), random forest (RF), and extreme gradient boosting (XGB)—based on seven environmental variables (e.g., sea surface temperature (SST), chlorophyll-a concentration (CHL)) at four spatial resolutions (0.083°, 0.25°, 0.5°, and 1°), filtered using Pearson correlation analysis. Optimal models were selected under each resolution through performance comparison. SHapley Additive exPlanations (SHAP) values were employed to interpret the contribution of environmental predictors, and the maximum entropy (MaxEnt) model was used to perform habitat suitability mapping. Results showed that the XGB model at 0.083° resolution achieved the best performance, with the area under the receiver operating characteristic curve (ROC_AUC) = 0.836, accuracy = 0.793, and negative predictive value = 0.862, outperforming models at coarser resolutions. CHL was identified as the most influential variable, showing high importance in both the SHAP distribution and the cumulative area under the curve contribution. Predicted suitable habitats were mainly located in the northern and central-southern South China Sea, with the latter covering a broader area. This study is the first to systematically evaluate the impact of spatial resolution on environmental variable selection in machine learning models, integrating SHAP-based interpretability with MaxEnt modeling to achieve reliable habitat suitability prediction, offering valuable insights for fishery forecasting in the South China Sea. Full article

Declining freshwater resources have spurred interest in saline–alkali (SA) water aquaculture, with species like tilapia and rainbow trout demonstrating ecological plasticity in such environments. However, the molecular mechanisms underlying fish adaptation and quality impacts remain unclear. This study investigated the hybrid fish “Xianfeng No. 1” (Erythroculter ilishaeformis × Ancherythroculter nigrocauda), a key aquaculture species in China, under 60-day SA exposure. The results showed increased levels of oxidative stress markers (MDA) and antioxidant enzymes (SOD, CAT, GSH-Px), alongside improved quality traits. Transcriptomics revealed differentially expressed genes (DEGs) in muscle tissue associated with oxidative stress (UQCRFS1, UQCR10, CYC1), ion transport (COX5A, COX7C, COX7B), and the immune response (ATG9A, ATG2B, ATG2A, ULK1, ULK2, CFI, CFH). Metabolomics identified increased non-volatile flavors (e.g., glycine, proline) and collagen-related compounds. Integrated analysis highlighted the upregulation of GSR and GGT, and the downregulation of CHDH and GBSA, potentially driving glycine accumulation. These findings suggest that SA stress enhances antioxidant capacity, activates immune pathways, and modulates ion transport, enabling adaptation while improving meat quality. This study elucidates molecular mechanisms of fish acclimation to SA environments, providing insights for sustainable aquaculture development and breeding of stress-tolerant species in SA regions. Full article

Overfishing and climate change have led to the depletion of fishery resources in the offshore South China Sea. The purpleback flying squid (Sthenoteuthis oualaniensis) has emerged as a promising alternative due to its ecological and economic value. However, information on its preferred habitat conditions remains scarce. This study integrates geostatistical and fisheries oceanographic approaches to explore optimal spatial–temporal scales for habitat modeling and to assess habitat changes under warming scenarios. Utilizing fishery data from 2013 to 2017, environmental variables including SST, sea surface temperature anomaly (SSTA), and chlorophyll-a concentration (CHL) were analyzed. Fishing effort data revealed significant seasonal differences, with the highest vessel numbers in summer and the lowest in autumn. Among the six modeling schemes, the combination of 0.5° × 0.5° spatial resolution and seasonal temporal resolution yielded the highest HSI model accuracy (84.02%). Optimal environmental ranges varied by season. Simulations of SST deviations (±0.2 °C, ±0.5 °C, and ±1 °C) showed that extreme warming or cooling could eliminate suitable habitats. These findings highlight the vulnerability of squid habitats to thermal shifts and support adaptive fishery strategies in the South China Sea. Full article

This study develops species-specific assessment models for carbon sink in marine aquaculture (CSMA) using provincial data from China’s coastal regions (2004–2023). Key findings are as follows: (1) Cumulative CSMA reached 46.3618 million tonnes, exhibiting three growth phases—initial fluctuations (2004–2008), rapid growth (2008–2015), and optimization and maturation (2015–2023). (2) Species contributions were heterogeneous: shellfish dominated at 45%, followed by shrimp (24%), fish (15%), crab (11%), and algae (5%). (3) Spatially, Guangdong, Fujian, and Shandong consistently lead in CSMA; Guangxi, Liaoning, and Zhejiang form a second tier, whereas Hebei, Hainan, and Jiangsu remain at the lower end. (4) Province-specific dominance patterns were observed: shellfish-dominant pattern in Shandong, Fujian, and Liaoning; shrimp-dominant pattern in Hebei and Hainan; shellfish-and-shrimp dual-cores in Guangdong and Guangxi; and a multifaceted profile in Jiangsu and Zhejiang. To facilitate the realization of CSMA’s value, we propose a dedicated trading mechanism. Based on the derivations from the effect analysis model and the illustrative case studies, we explore the potential economic and ecological benefits of CSMA trading. Full article

A new species of jellyfish, Phyllorhiza yurena Chen, Hu & Xing sp. nov., is described from the East China Sea based on an integrative approach combining morphological and molecular data. Specimens were collected from coastal waters and cultured in the laboratory to observe their complete life cycle, including polyps, ephyrae, and medusae. Distinct morphological features such as the blue lappet stems in ephyrae, white warts on the exumbrella, and multiple short club-shaped appendages on the mouth arms distinguish the new species from its congeners. Phylogenetic analyses based on mitochondrial (COI, 16S) and nuclear (18S, 28S) gene markers confirmed its taxonomic distinctiveness, with COI and 16S markers providing the most resolution. The study highlights the importance of combining life history observations with molecular tools for accurate jellyfish taxonomy and provides a revised identification key for the genus Phyllorhiza. This discovery contributes to the understanding of jellyfish biodiversity in the East China Sea and offers a baseline for future ecological and biogeographic studies. Full article