Distinguished Loop-Mediated Isothermal Amplification Assay to Detect Porcine Epidemic Diarrhea Virus Genotypes I and II
Simple Summary
Abstract
1. Introduction
2. Materials and Methods
2.1. Sample Collection
2.2. DNA and RNA Extraction
2.3. LAMP Primer Design
2.4. Plasmid Standard Construction
2.5. Conventional RT-PCR
2.6. RT-LAMP
2.7. Sensitivity and Specificity
2.8. Reproducibility
2.9. Detection of PEDV in Clinical Samples by Conventional RT-PCR and RT-LAMP
3. Results
3.1. Optimization of the PEDV RT-LAMP Method
3.2. Specificity of the RT-LAMP Assay
3.3. Sensitivity Comparison Between RT-LAMP and RT-PCR
3.4. Reproducibility of the RT-LAMP Assay
3.5. Clinical Sample Detection
4. Discussion
5. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Primer Set | Primer ID | Sequence (5′-3′) |
---|---|---|
PEDV-LM | PEDV-LM-FIP | CCTGTACGCCAGTAGCAACCTTGAGCACCAACTGGTGTAACG |
PEDV-LM-BIP | ATTTCGTCACAGTCGCCAAGGCGACTGAACGACCAACACGT | |
PEDV-LM-F3 | TCTGTGATGGGCCGACAG | |
PEDV-LM-B3 | CCAGTGCCAGATGAAGCATT | |
PEDV-LS | PEDV-LS-FIP | ACTAGCAGTTTCAATGCCTGTGGTTACCTACCTAGTATGAACTCT |
PEDV-LS-BIP | GGCGTTCATGGTATTTTTCTCAGCCTAGGATCAAACGGCTCTTG | |
PEDV-LS-F3 | AAATTTAATGTTCAGGCACCT | |
PEDV-LS-B3 | GTGGCCTTATGTAAATAAAGCT | |
qPCR [19] | PEDV-GI-F | TGTTTTGGGTGGTTATCTACCTA |
PEDV-GI-R | AGCTGGTAACCACTAGGAT | |
PEDV-GII-F | CCAGTACTTTCAACACTTAGCCTA | |
PEDV-GII-R | GCCACTAGCAGTTGGATG |
PEDV Genotype | Sample No. | qPCR | RT-LAMP | Positive Rate | |||
---|---|---|---|---|---|---|---|
Positive | Negative | Positive | Negative | qPCR | RT-LAMP | ||
GI | 35 | 1 | 23 | 1 | 23 | 34.3% | 34.3% |
GII | 11 | 11 |
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Liu, Z.; Li, L.; Fang, M.; Wei, X.; Li, J.; Wu, Q.; Yang, X.; Ye, Y.; Wan, G.; Huang, D.; et al. Distinguished Loop-Mediated Isothermal Amplification Assay to Detect Porcine Epidemic Diarrhea Virus Genotypes I and II. Vet. Sci. 2025, 12, 399. https://doi.org/10.3390/vetsci12050399
Liu Z, Li L, Fang M, Wei X, Li J, Wu Q, Yang X, Ye Y, Wan G, Huang D, et al. Distinguished Loop-Mediated Isothermal Amplification Assay to Detect Porcine Epidemic Diarrhea Virus Genotypes I and II. Veterinary Sciences. 2025; 12(5):399. https://doi.org/10.3390/vetsci12050399
Chicago/Turabian StyleLiu, Zhong, Lanlan Li, Mengtao Fang, Xiaoqing Wei, Jieqiong Li, Qi Wu, Xiaoxue Yang, Yu Ye, Gen Wan, Dongyan Huang, and et al. 2025. "Distinguished Loop-Mediated Isothermal Amplification Assay to Detect Porcine Epidemic Diarrhea Virus Genotypes I and II" Veterinary Sciences 12, no. 5: 399. https://doi.org/10.3390/vetsci12050399
APA StyleLiu, Z., Li, L., Fang, M., Wei, X., Li, J., Wu, Q., Yang, X., Ye, Y., Wan, G., Huang, D., & Song, D. (2025). Distinguished Loop-Mediated Isothermal Amplification Assay to Detect Porcine Epidemic Diarrhea Virus Genotypes I and II. Veterinary Sciences, 12(5), 399. https://doi.org/10.3390/vetsci12050399