Neglected Infectious Diseases of Swine

A special issue of Pathogens (ISSN 2076-0817). This special issue belongs to the section "Viral Pathogens".

Deadline for manuscript submissions: 31 March 2026 | Viewed by 436

Special Issue Editors


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Guest Editor
National Institute for Agricultural and Veterinary Research, 2780-157 Oeiras, Portugal
Interests: animal viral diseases
Special Issues, Collections and Topics in MDPI journals

E-Mail Website
Guest Editor
National Institute for Agricultural and Veterinary Research, 2780-157 Oeiras, Portugal
Interests: animal viral diseases

E-Mail Website
Guest Editor
National Institute for Agricultural and Veterinary Research, 2780-157 Oeiras, Portugal
Interests: animal viral diseases
Special Issues, Collections and Topics in MDPI journals

Special Issue Information

Dear Colleagues,

Swine farming is a vital sector of the global animal agriculture industry, providing a major source of protein for human consumption. While modern pig production systems are designed to maximize efficiency and meat yield, they also present significant challenges. One of the most serious issues is infectious diseases.

Pigs are susceptible to a wide range of viral, bacterial, and parasitic diseases, many of which spread quickly in high-density environments. Well-known examples include African Swine Fever (ASF), Porcine Reproductive and Respiratory Syndrome (PRRS), and swine influenza (SIV). These diseases can cause major economic losses due to mortality, reduced productivity, and trade restrictions. Consequently, they attract considerable attention from researchers, policymakers, and industry experts.

However, there is a group of infectious diseases in pigs that are often overlooked: the neglected infectious diseases. These include illnesses that pose a less immediate economic threat, but which can have serious long-term impacts. In smallholder or backyard farming systems, particularly in low- and middle-income countries, these diseases can affect both animal and human health alike, thereby contributing to poverty and food insecurity. Minor diseases of pigs include viral (Swine Influenza A virus (SwIAV), Hepatitis E virus (HEV), Porcine Reproductive and Respiratory Syndrome virus (PRRSV)), and bacterial (Erysipelas, Leptospirosis, Melioidosis), and parasitic (cysticercosis, trichinellosis, balantidiasis) diseases. Wild boars, which are widely distributed across Europe, Asia, and parts of the Americas, are also susceptible to these neglected diseases, including zoonoses. These pathogens can be transmitted through direct contact, environmental contamination, or the consumption of undercooked wild meat. As wild boars are free-ranging and often interact with farm animals, hunters, and rural communities, they represent a significant yet poorly monitored source of infection.

Neglected diseases often go undiagnosed due to the lack of surveillance, inadequate veterinary infrastructure, and limited research funding. The economic losses associated with these diseases can be disastrous for the industry, and their zoonotic potential is a public health concern. Controlling these diseases requires an integrated approach, including improved hygiene, vaccination, farmer education, and better monitoring systems.

We invite colleagues investigating any of the pathogens affecting pigs in relation to genetics, genomics, immunology, detection, public health, and vaccine development to submit their original research and review manuscripts to this Special Issue.

We look forward to receiving your submissions.

Dr. Ana Margarida Henriques
Dr. Ana Isabel Simões Pereira Duarte
Dr. Margarida Dias Duarte
Guest Editors

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Keywords

  • swine diseases
  • swine viruses
  • swine bacteria
  • swine parasites
  • molecular diagnosis
  • serological diagnosis
  • next-generation sequencing
  • vaccination
  • disease control
  • phylogenetic analysis

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Published Papers (1 paper)

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Research

16 pages, 18565 KB  
Article
Evidence of Spillover and Recombination Between Domestic Pigs and Wild Boars Provides New Insights into Porcine Circoviruses
by Bernardo Almeida, Margarida D. Duarte, Ana Duarte, Sílvia C. Barros, Fábio Abade dos Santos and Ana Margarida Henriques
Pathogens 2025, 14(12), 1283; https://doi.org/10.3390/pathogens14121283 - 13 Dec 2025
Viewed by 274
Abstract
Porcine circovirus types 2 (PCV2) and 3 (PCV3) are major pathogens affecting swine health and productivity, yet important gaps remain in understanding their evolution and circulation in Europe, particularly within wild boar populations that may serve as reservoirs. This study examined the genetic [...] Read more.
Porcine circovirus types 2 (PCV2) and 3 (PCV3) are major pathogens affecting swine health and productivity, yet important gaps remain in understanding their evolution and circulation in Europe, particularly within wild boar populations that may serve as reservoirs. This study examined the genetic diversity and evolutionary dynamics of PCV2 and PCV3 in Portugal, drawing on viral genomes obtained from domestic pigs and wild boars to explore transmission patterns, spillover events and the contribution of recombination to viral emergence. We identified two PCV2 genotypes (PCV2a and PCV2d) and two PCV3 genotypes (PCV3-2a and PCV3-3g) circulating in Portuguese swine. Phylogeographic reconstruction revealed multiple introductions of both PCV2 and PCV3 from China into Europe, followed by regional diversification and subsequent spread within European wild boar populations. Evidence of bidirectional viral exchange between domestic pigs and wild boars was also observed. Recombination played a notable role in PCV2 evolution, with consistent signals detected among PCV2a sequences and indications that the PCV2h genotype likely originated from a recombinant event involving a Portuguese PCV2a strain and a Chinese PCV2d strain. By contrast, no recombination was detected in PCV3, suggesting that its evolution is primarily mutation-driven. Overall, these findings highlight the complex evolutionary history of swine circoviruses in Europe and underscore the importance of continuous genomic surveillance in both domestic and wild hosts. The study reinforces the value of a One Health approach for monitoring and controlling emerging circoviruses with implications for animal health and livestock production. Full article
(This article belongs to the Special Issue Neglected Infectious Diseases of Swine)
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