Programmable Hydrogel Biosensors for Cancer Biomarkers
Abstract
1. Introduction
2. Clinical or Biomedical Objective
2.1. Cancer Biomarker Detection as the Central Clinical Objective
2.2. Point-of-Care Translation and Multiplexed Clinical Monitoring
2.3. Tumor Biology, Disease Modeling, and Treatment-Response Assessment
2.4. Therapeutic and Theranostic Extensions
2.5. Contextual Biomedical Extensions
3. Target Analyte, Biological System, and Sample Context
3.1. Liquid-Biopsy and Nucleic Acid Targets
3.2. Protein, Enzymatic, Immune, and Cell-Surface Biomarkers
3.3. Metabolic, Redox, and Tumor-Microenvironment Signals
3.4. Cancer-Cell, Three-Dimensional, and Animal Model Contexts
3.5. Therapeutic-Release, Cancer-Adjacent, and Boundary Contexts
| Target Analyte, Biological System, and Sample Context | Cancer-Focused Targets or Biological Entities | Biological Sample, Model, or Patient-Derived Context | Representative References |
|---|---|---|---|
| Nucleic acid biomarkers | miR-21, microRNA-141, microRNA-381, microRNA-16, microRNA-155, microRNA-122, and microRNA-19b | Serum-derived RNA, human serum, untreated serum, crude cancer cell lysates, breast cancer cells, gastric cancer ascites-derived exosomes, patient samples, and hepatocellular carcinoma subtype contexts | [1,10,11,13,16,17,18,20,21,24,26,99,100] |
| Oncogenic and cancer-associated DNA targets | HPV DNA, human papillomavirus 16 DNA, mitochondrial DNA, cfDNA, and circulating tumor DNA carrying the B-Raf proto-oncogene serine/threonine-protein kinase V600E mutation | Cervical cancer screening contexts, clinical urine, cervical brush samples, ovarian cancer patient DNA, and blood plasma from patients with thyroid cancer or thyroid nodules | [6,8,22,23] |
| Extracellular vesicles and CTCs | Prostate cancer-derived exosomes, cancer-associated extracellular vesicles, extracellular vesicle-associated miR-21 and EpCAM, and EpCAM-positive CTCs | Human serum, breast cancer patient versus healthy donor serum, blood samples, MCF-7 CTC models, and 2 µL blood sample contexts | [2,10,25] |
| Soluble protein and antigen biomarkers | Human epidermal growth factor receptor 2, cancer antigen 15-3, CEA, prostate-specific antigen, alpha-fetoprotein, cancer antigen 125, human epididymis protein 4, CYFRA-21-1, tumor necrosis factor alpha, C-reactive protein, human chorionic gonadotropin, neuron-specific enolase, and squamous cell carcinoma antigen | Serum, saliva, artificial saliva, urine, patient-derived samples, and breast, prostate, ovarian, oral, hepatocellular, melanoma, and lung cancer contexts | [4,7,9,12,14,15,27,28,29,31,33,34,36,37,38,39,41,42,101] |
| Enzymatic, immune, and receptor-associated biomarkers | Matrix metalloproteinase-9, matrix metalloproteinase-2/9, hyaluronidase, glutathione S-transferase, interleukin-2, soluble interleukin-2 receptor alpha, interleukin-6, programmed cell death protein 1 antibody, EpCAM, folate receptor-associated HeLa recognition, and biotin receptor-overexpressing cells | Urine, serum, pancreatic cancer serum, sweat, patient-derived blood, biological fluids, cancer cell surfaces, receptor-positive cancer cells, K562 leukemia cells, and A549 lung cancer cells | [25,30,32,35,40,47,52,54,59,63,83,90,103,104] |
| Metabolic, redox, and tumor-microenvironmental signals | Lactate, glucose, adenosine triphosphate, pH, aldehydes, glycoproteins, oxidative stress markers, H2O2, superoxide, nitric oxide, ROS, and GSH | Sweat, serum, interstitial-fluid mimics, isolated cancer cells, prostate cells, three-dimensional breast cancer cultures, HeLa, prostate cancer-3, B16 melanoma F10, Chinese hamster ovary-K1, MCF-7, and M. D. Anderson metastatic breast 231 models | [3,70,71,72,73,74,75,76,77,78,79,80,94,106,107] |
| Cancer cell, spheroid, and tumor model systems | Breast cancer spheroids, human hepatoma 7 colonies, human hepatoma 7 and human hepatocellular carcinoma G2 drug-response models, malignant invasive cells, MCF-7, M. D. Anderson metastatic breast 231, HeLa, prostate cancer-3, B16 melanoma F10, A549, and K562 cells | Three-dimensional cancer cultures, hydrogel tumor models, invasion models under interleukin-6 stimulation, cancer microenvironment-mimicking phantoms, cell-loaded constructs, and tumor-bearing or xenografted mouse models | [53,60,66,67,68,70,72,83,87,89,91,108,109,110] |
| Therapeutic-release and cancer-adjacent biological systems | Model protein release, small interfering RNA delivery, insulin release, spectinomycin release, chemotherapeutic release, and doxorubicin delivery | Nuclease-responsive systems, ovarian cancer cells, human hepatocellular carcinoma G2 cytotoxicity testing, tumor-site release models, cancer cells, and xenografted breast cancer-bearing mice | [45,88,89,91,111,112] |
| Boundary and noncancer biological contexts | Lipopolysaccharide, Porphyromonas gingivalis, Escherichia coli, Staphylococcus aureus, severe acute respiratory syndrome coronavirus 2-related targets, glucose, human serum albumin, citrus pathogen DNA, honey antioxidant activity, adenosine triphosphate, 3,3′,4,4′-tetrachlorobiphenyl, rhodamine 6G, and 4-mercaptopyridine | Food samples, saliva, wound-infection models, biomedical swabs, blood- or urine-related matrices, citrus leaf samples, honey samples, and model in situ analyte systems | [48,50,55,61,62,92,93,98,113,114] |
4. Hydrogel–Nanomaterial Platform Design
4.1. Hydrogel Matrices as Cancer Biosensing Construction Platforms
4.2. Nanomaterial Integration Within Hydrogel Biosensing Architectures
4.3. Electrode-Centered and Antifouling Hydrogel Interfaces
4.4. Portable, Paper-Based, Microfluidic, Wearable, and Optical Formats
4.5. Three-Dimensional, Programmable, and Responsive Hydrogel Systems
5. Functional Mechanism and Readout Strategy
5.1. DNA and Nucleic-Acid Hydrogel Platforms
5.2. Protein, Vesicle, and Cell-Surface Biomarker Interfaces
5.3. Enzymatic, Catalytic, and Tumor-Microenvironment-Responsive Hydrogels
5.4. Conductive Hydrogels and Electrochemical Transduction
5.5. Optical, Plasmonic, and Smartphone-Readable Hydrogel Biosensors
5.6. Magnetic, Acoustic, Photothermal, and Cell-Based Screening Readouts
6. Performance Outcomes and Translational Relevance
6.1. Analytical Performance Across Cancer Biomarker Classes
6.2. Validation in Clinical Samples and Point-of-Care Formats
6.3. Dynamic Sensing of Tumor Biology and Therapeutic Response
7. Limitations and Future Perspectives
8. Conclusions
9. Evidence-to-Practice Roadmap
Funding
Data Availability Statement
Acknowledgments
Conflicts of Interest
Abbreviations
References
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| Clinical or Biomedical Objective | Cancer-Focused Need Addressed | Pattern Revealed Across the Studies | Representative References |
|---|---|---|---|
| Early cancer biomarker detection and diagnostic recognition | Need for sensitive detection of cancer-associated molecular, cellular, enzymatic, vesicular, and tumor microenvironmental indicators in clinically relevant contexts. | This is the core objective of the section: hydrogels are used as biomarker-responsive interfaces to support earlier or more reliable cancer detection. | [1,2,3,4,6,7,9,11,12,13,14,15,22,82] |
| Liquid biopsy and minimally invasive cancer monitoring | Need to detect cancer-relevant signals in accessible biological materials, including blood-derived samples, serum, plasma, saliva, urine, sweat, extracellular vesicles, circulating nucleic acids, and circulating tumor cells. | The field is moving from conventional laboratory assays toward patient-compatible monitoring formats that may support repeat testing and clinical surveillance. | [5,8,10,11,13,23,25,33,84] |
| Point-of-care and decentralized cancer diagnostics | Need for rapid, low-cost, portable, visual, wearable, paper-based, or smartphone-assisted cancer biosensing beyond centralized laboratory settings. | Hydrogels frequently support practical diagnostic formats; however, this objective is best framed as translational deployment rather than analytical performance alone. | [15,32,40,56,57,59,84,85] |
| Multiplexed and clinically informative biomarker profiling | Need to move beyond single-marker detection toward simultaneous or multiparameter assessment for cancer classification, subtype identification, or clinically richer monitoring. | The pattern is a shift from isolated biomarker measurement toward integrated biomarker panels and multisignal platforms that may better reflect cancer heterogeneity. | [10,14,15,26,31,42,43] |
| Tumor biology, three-dimensional cancer modeling, and drug-response assessment | Need for hydrogel-based systems that monitor cancer cell behavior, metabolism, invasion, colony formation, subtype-dependent differences, oxidative or nitrosative signaling, and treatment response in more physiologically relevant settings. | These studies are not solely diagnostic; they use biosensing hydrogels as experimental platforms for understanding cancer progression and therapeutic response. | [26,60,64,65,66,67,68,69,70,71,72] |
| Biomarker-responsive therapeutic or theranostic integration | Need to connect cancer detection, imaging, controlled release, photothermal or photodynamic intervention, ribonucleic acid modulation, or tumor-responsive therapy within multifunctional hydrogel systems. | This is a secondary but cancer-relevant objective: hydrogels can link biomarker responsiveness with therapeutic action, although these studies should not dominate a biosensing-centered section. | [19,44,45,80,86,87,88,89,90,91] |
| Contextual biomedical and translational extensions | Need for responsive hydrogel platforms in adjacent areas, including infectious disease detection, antimicrobial wound care, regenerative medicine, tissue engineering, wearable monitoring, agricultural diagnostics, and food-related biomedical screening. | These studies demonstrate the broader versatility of hydrogel biosensing, but they serve as contextual boundary-setting examples rather than central evidence for cancer biomarker biosensing. | [42,49,50,52,53,55,92,93,94,95,96,97,98] |
| Translational readiness and practical deployment | Need to determine whether hydrogel biosensors can move beyond proof-of-concept performance toward reproducible, scalable, and clinically usable formats. | Sensitivity is only one dimension of readiness; sample matrix, assay time, instrumentation, batch-to-batch reproducibility, storage stability, cost, and workflow complexity also shape clinical feasibility. | [13,15,24,32,33,34,35,40,57,58,59,84,85] |
| Hydrogel–Nanomaterial Platform Design | Cancer Biosensing Design Logic | Representative Construction Features | Construction Details | Primary Recognition, Transduction, and Amplification Roles | Representative References |
|---|---|---|---|---|---|
| Hydrogel-modified electrode interfaces | The hydrogel functions as the hydrated cancer biomarker sensing interface, while the electrode or conductive additive provides electrical coupling. | PEG-modified chitosan on gold; zwitterionic hydrogels on screen-printed carbon electrodes; PEGDA hydrogel microstructures on gold microelectrodes; poly(3,4-ethylenedioxythiophene)/gold nanoparticle (AuNP)–peptide hydrogel interfaces; κ-carrageenan on mesoporous gold; chitosan/titanium dioxide and Prussian blue–platinum nanoparticle–PANI hydrogel-modified glassy carbon electrodes. | Electrode or substrate identity; hydrogel coating chemistry; conductive or antifouling interfacial layer; immobilization-compatible surface architecture. | Hydrogel: hydrated and antifouling recognition interface and probe-support layer; electrode or conductive additive: transduction; nanomaterial, redox label, or catalytic component: amplification where present. | [4,12,17,26,27,28,36,41,73,81,92] |
| Nanomaterial-loaded hydrogel sensing matrices | The hydrogel serves as a hydrated three-dimensional host, while embedded or surface-associated nanomaterials provide optical, catalytic, plasmonic, magnetic, or conductive function. | Chitosan hydrogels with gold nanorods; PEG hydrogel microparticles coated with silver nanoparticles; graphene hydrogel/AuNP substrates; carbon dot–chitosan hydrogels; gold–silver nanocluster-loaded DNA hydrogels; palladium nanoparticle/carboxymethyl cellulose–covalent organic framework hydrogels; metal–organic framework-loaded polyvinyl alcohol hydrogels. | Nanomaterial class and placement within or on the hydrogel; composite architecture; whether the hydrogel is used as a bulk matrix, film, nanogel, microparticle, or probe. | Hydrogel: three-dimensional host, biomarker-accessible matrix, and local recognition environment; nanomaterial: optical, catalytic, plasmonic, magnetic, conductive, or photothermal transduction and amplification. | [18,31,32,39,44,48,54,55,89] |
| DNA-programmed hydrogel biosensing architectures | The hydrogel provides programmable nucleic acid networks for organizing probes, crosslinks, capsules, films, or three-dimensional DNA structures. | DNA-crosslinked PEG hydrogels; DNA hydrogel microcapsules with quantum dots (QDs); DNA nanoflower-loaded hydrogels; ultrathin DNA–AuNP hydrogel films; sequence-programmable supramolecular DNA hydrogels; porous three-dimensional DNA networks. | DNA as a crosslinker, scaffold, capsule, film, or network; inclusion of aptamers, DNA probes, QDs, AuNPs, or DNA nanostructures. | DNA hydrogel network: recognition, programmable assembly, target-triggered switching, or release; QDs, AuNPs, or reporters: signal generation and amplification. | [6,10,13,20,25,33,45,57,91,117] |
| Paper-based and microfluidic hydrogel devices | The hydrogel enables portable, low-volume, spatially organized, or flow-controlled assay formats for cancer biomarker biosensing. | Fenugreek hydrogel/nano-hematite microfluidic paper-based analytical devices; polymethyl methacrylate/paper disks with thermoresponsive hydrogel clips; hydrogel-framed electrospun nanofiber matrices in microfluidic chips; hydrogel-filled microchannels; three-dimensional microfluidic paper-based analytical devices with chemiluminescent hydrogels; gel-based microparticle arrays. | Device format; paper or microfluidic integration; hydrogel role in flow control, spatial patterning, or matrix support; fabrication data where relevant. | Hydrogel: flow control, reagent localization, sample-interface support, or matrix-assisted recognition; paper or microfluidic device: assay handling and transport; reporter or nanomaterial: readout and amplification. | [8,15,30,42,56,59,67,84,85,118] |
| Wearable, implantable, optical, and minimally invasive hydrogel formats | The hydrogel provides soft, conformal, tissue-facing, optical, or needle-compatible interfaces, while device hardware defines the sampling geometry. | Silver nanowire–hydrogel wearable composites; hydrogel-coated stainless-steel microneedles; thermally exfoliated graphene oxide-based flexible immunosensors; hydrogel optical fibers; soft-polymer optical fiber surface-enhanced Raman scattering probes; lab-on-a-needle platforms. | Wearable or implantable format; fiber, needle, or substrate geometry; conformal or hydrated interface; key dimensions, such as 1.2 mm needle diameter and 150 micrometers × 2 mm sensing region. | Hydrogel: soft tissue-facing, conformal, sampling, or optical interface; device hardware: sampling geometry and transduction pathway; nanomaterial: signal enhancement where included. | [3,52,61,83,94,109,110,113] |
| Three-dimensional cell-culture scaffolds and bioink-based platforms | The hydrogel organizes cells, electrodes, and nanomaterials within spatially defined, cancer-relevant three-dimensional biosensing environments. | Three-dimensional printed hydrogel scaffolds with plasmonic nanoparticles and surface-enhanced Raman scattering tags; alginate hydrogels with cells between vertical electrodes; methyl cellulose cell-colony hydrogels; PEGDA/gelatin methacryloyl printed constructs; MXene–hyaluronic acid/alginate bioinks; titanium foam/peptide hydrogel scaffolds. | Three-dimensional scaffold or bioink composition; cell-compatible hydrogel matrix; electrode or scaffold arrangement; printable or spatially patterned architecture. | Hydrogel: three-dimensional biological context, cell positioning, and cell-compatible sensing environment; electrodes, optical probes, or nanoparticles: transduction and signal enhancement. | [46,53,60,65,66,69,72,95] |
| Responsive, supramolecular, and photofunctional hydrogel systems | The hydrogel is engineered as an active material platform whose structure, mechanics, conductivity, or optical properties contribute directly to the biosensing design. | Mineralized poly(acrylic acid)–manganese dioxide hydrogels; titanium dioxide/MXene conductive hydrogels; manganese dioxide@polydopamine hydrogels; cadmium selenide QD–chitosan/poly(methacrylic acid) nanogels; iridium-complex peptide hydrogels; Nile Blue–QD hydrogels; PEG hydrogel arrays with cadmium sulfide QDs. | Material responsiveness or photofunctional composition; gelation or mechanical data where construction-relevant, including 0.03 weight percent critical gelation concentration, 297–3888 pascal shear modulus, and approximately 600% critical strain. | Hydrogel: stimulus-responsive recognition, switching, degradation, release, or structural reconfiguration; photofunctional materials, conductive fillers, or reporters: transduction and amplification. | [11,37,40,71,76,77,78,88,89,90,115] |
| Functional Mechanism and Readout Strategy | Cancer Biomarker, Stimulus, or Biological Input | Hydrogel-Mediated Conversion | Principal Readout Pattern | Recognition, Transduction, and Amplification Roles | Representative References |
|---|---|---|---|---|---|
| DNA and nucleic acid hydrogel gating and amplification | miRNAs, HPV DNA, circulating nucleic acids, alpha-fetoprotein-linked aptamer response, and EpCAM-positive cells | Target hybridization, strand displacement, clustered regularly interspaced short palindromic repeat-associated activation, hybridization chain reaction, catalytic hairpin assembly, DNA nanonet formation, or hydrogel dissolution alters network integrity or releases reporters. | Fluorescence, FRET, colorimetric AuNP release, PEC signal, distance-based paper flow, electrochemical current, or cell capture/release readout. | Recognition or switching: nucleic acid probes, aptamers, clustered regularly interspaced short palindromic repeat-associated systems, or DNA hydrogel networks; transduction or amplification: fluorophores, AuNPs, titanium dioxide nanoparticles, enzymes, electrochemical labels, or released reporters. | [5,6,11,13,17,20,24,25,57,58,99] |
| Antifouling protein, vesicle, and cell-surface biomarker interfaces | Human epidermal growth factor receptor 2, prostate-specific antigen, cancer antigen 125, human epididymis protein 4, CEA, cancer antigen 15-3, tumor necrosis factor alpha, CYFRA-21-1, interleukin-6, and EpCAM-positive extracellular vesicles | Low-fouling antibody or aptamer interfaces preserve biomarker recognition, support local enrichment, and regulate charge transfer or fluorescence signaling in complex media. | Impedance, voltammetry, amperometry, conductance, multicolor fluorescence, SPR/SPRi, or near-infrared-regulated electrochemical interfacial response. | Recognition: antibodies, aptamers, or affinity ligands; hydrogel: antifouling capture and enrichment interface; transduction or amplification: electrode response, conductive additives, AuNPs, fluorescence probes, SPR/SPRi structures, or near-infrared-responsive elements. | [4,7,9,10,12,28,31,34,37,38,39,52] |
| Enzymatic, catalytic, and degradation-mediated readouts | Hyaluronidase, matrix metalloproteinase-2/9, nucleases, glutathione S-transferase, β-glucan-related enzymatic reactions, and folate receptor-positive cancer cells | Enzymatic cleavage, hydrolysis, viscosity change, reporter release, catalyst release, or nanozyme-mediated reporter conversion produces a measurable signal. | Fluorescence, luminescence enhancement, wet-area readout, paper-flow distance, pressure or weight signal, TMB color reaction, colorimetric/fluorescent nanozyme response, or plasmonic nanoparticle etching. | Recognition: enzyme-sensitive hydrogel networks, substrates, or folate-mediated cell targeting; transduction or amplification: reporter release, catalyst release, TMB chemistry, nanozyme activity, pressure or flow change, or plasmonic etching. | [8,30,32,35,40,45,47,54,56,59,90,102] |
| Tumor microenvironmental and metabolic response | ROS, H2O2, GSH, pH variation, lactate, pyrophosphate, and adenosine triphosphate | Redox-, pH-, or metabolite-sensitive hydrogels undergo manganese dioxide degradation, MXene/titanium dioxide transformation, pH-sensitive emission, fluorescence quenching or recovery, conductivity or resistance shifts, FRET modulation, or nanozyme-mediated ROS generation and GSH depletion. | Fluorescence, ratiometric emission, conductivity or resistance, colorimetry, photothermal change, or FRET-based lactate imaging. | Recognition or stimulus response: redox-, pH-, metabolite-, or adenosine triphosphate-responsive hydrogel chemistry; transduction or amplification: fluorescence recovery, conductive shifts, colorimetric output, photothermal conversion, FRET modulation, or nanozyme activity. | [71,75,76,77,78,79,80,89,107,108,116] |
| Optical, plasmonic, Raman, and smartphone-readable hydrogel outputs | Cancer cells, exosomes, alpha-fetoprotein, miRNAs, proteins, metabolites, and sweat-derived molecular fingerprints | Hydrogels localize QDs, nanoclusters, SERS tags, AuNPs, gold nanorods, chemiluminescent reagents, or plasmonic hotspots to support signal localization and amplification. | Fluorescence, SERS, SPR/SPRi, localized surface plasmon resonance shift, colorimetry, chemiluminescence, red–green–blue/hue–saturation–value/gray-value smartphone analysis, or artificial intelligence-classified Raman fingerprints. | Recognition or localization: hydrogel-supported capture probes, responsive release, or analyte enrichment; transduction or amplification: QDs, nanoclusters, AuNPs, gold nanorods, SERS tags, chemiluminescent reagents, smartphone analysis, or artificial intelligence-assisted spectral classification. | [2,3,10,15,33,48,54,60,61,63,82] |
| Conductive hydrogel, electrochemical, PEC, and ECL transduction | miRNAs, mitochondrial DNA, thrombin, human epidermal growth factor receptor 2, cancer antigen 125, H2O2, superoxide, nitric oxide, glucose, and sarcosine | Conductive, redox-active, or charge-transport-regulating hydrogels control charge transfer, redox-label access, hexaammineruthenium(III)-mediated charge accumulation, enzyme catalysis, photocurrent, or luminophore retention/release. | Current, impedance, chronocoulometry, PEC photocurrent, ECL intensity, low-potential glucose sensing at −0.2 V, cancer antigen 125 amperometry at 0.18 V, or hydrogel-electrolyte-enhanced ECL. | Recognition: probes, enzymes, antibodies, or aptamers at the hydrogel/electrode interface; transduction: electrodes, PEC structures, or ECL systems; amplification: conductive fillers, redox labels, enzymes, luminophores, nanoclusters, or catalytic nanoparticles. | [14,21,22,41,51,70,72,73,74,81,94,119,120] |
| Magnetic, acoustic, mass-sensitive, and photothermal transduction | RNA/protein biomarkers, cancer antigen 15-3, tissue inhibitor of metalloproteinases-1, aptamer targets, and residual tumor markers | Responsive hydrogels activate magnetic nanoparticles, expose superparamagnetic particles, support antigen-induced mass loading, transmit acoustic responses, or undergo light-driven thermal transitions. | Magnetic signal, low-field nuclear magnetic resonance, quartz crystal microbalance, surface acoustic wave sensing, thermal imaging, photothermal therapy, dye release, hydrogel phase transition, or photothermal signal amplification. | Recognition or gating: aptamer binding, antigen binding, or responsive hydrogel opening; transduction or amplification: magnetic nanoparticles, superparamagnetic particles, quartz crystal microbalance/surface acoustic wave devices, photothermal nanomaterials, or light-driven phase transitions. | [27,29,43,44,62,85,110] |
| Cell-based and three-dimensional cancer screening readouts | Drug response, colony formation, invasion, cell viability, apoptosis, migration, H2O2/nitric oxide secretion, and metabolic markers | Hydrogel-supported cells or microfluidic gel compartments control cell localization, diffusion, matrix interaction, analyte transport, and spatial encoding. | Impedance, capacitance, live/dead fluorescence, electrochemical secretion monitoring, or spatially encoded multiplex protein/glucose readout. | Recognition or context: hydrogel-defined cell microenvironment, spatial organization, and matrix interaction; transduction or amplification: impedance or capacitance electrodes, fluorescence probes, electrochemical secretion monitoring, or encoded microfluidic readouts. | [42,64,65,66,67,68,69,70,93] |
| Performance Outcomes and Translational Relevance | Platform Class/Sensing Format | Hydrogel Contribution to Biosensing | Cancer-Related Biomarker or Application | Detection Limit and Linear Range | Sample Matrix, Assay Time, and Sample Volume | Selectivity, Reproducibility, or Stability | Clinical Validation, Equipment Needs, and Technology Maturity | Key Limiting Conditions for Comparison | Representative References |
|---|---|---|---|---|---|---|---|---|---|
| High-sensitivity liquid-biopsy nucleic acid sensing | Hydrogel microgels, DNA hydrogels, PEG hydrogel arrays, DNA nanonets, and hydrogel-assisted enrichment systems | Provides hydrated three-dimensional confinement, probe protection, target enrichment, antifouling interfaces, and responsive release or amplification environments. | miR-21, microRNA-141, microRNA-9-2, microRNA-155, cfDNA, mitochondrial DNA, and circulating miRNAs | Representative values include 44.9 picomolar for amplified microRNA-141, approximately 10 femtomolar for miR-21, 50 attomolar for microRNA-9-2, 0.835 femtomolar for miR-21, 3.6083 femtomolar for circulating miR-21, and 1.0 × 10−20 molar for mitochondrial DNA; reported ranges include 102–105 picomolar for amplified microRNA-141 and 1 femtomolar–500 picomolar for miR-21. | Validated in serum, crude cancer cell lysates, untreated human serum, ovarian cancer patient DNA samples, and cfDNA workflows; a 20 microliter sample volume and 1 h detection time were reported for one miR-21 microgel system; cfDNA enrichment was completed within 5 min. | Reproducibility of ≤5% relative standard deviation was reported for microRNA-9-2 sensing; >75% recovery was reported for cfDNA enrichment; serum miR-21 results were comparable to reverse transcription polymerase chain reaction. | Maturity is strongest when platforms are paired with patient-derived samples, minimally processed matrices, or molecular clinical comparisons; equipment ranges from fluorescence and electrochemical readouts to PEC and enrichment polymerase chain reaction workflows. | Performance depends strongly on nucleic acid extraction or enrichment, amplification strategy, matrix complexity, and whether testing used untreated serum, crude lysate, or patient-derived samples. Direct LOD comparison is limited by differences in preprocessing and readout instrumentation. | [11,13,16,20,22,24,81] |
| Extracellular vesicle and multianalyte liquid biopsy | DNA supramolecular hydrogel biosensors and hydrogel–AuNP SPRi systems | Enables extracellular vesicle capture, enrichment, molecular recognition, and multimarker signal generation within a single assay environment. | Extracellular vesicle-associated miR-21, EpCAM, and prostate cancer-derived exosomes | The extracellular vesicle biosensor achieved reported 100% accuracy in distinguishing breast cancer patients from healthy donors; Pearson coefficients were 0.987 for miR-21 and 0.999 for EpCAM; the exosome SPRi system detected 1.00 × 105–1.00 × 107 particles per milliliter, with an LOD of 1.00 × 105 particles per milliliter. | Validated in serum samples; extracellular vesicle assay processing time was 30 min; sample volume was not reported in the provided summaries. | Multimarker correlation supported analytical reliability; selectivity was linked to extracellular vesicle-associated molecular recognition. | Translational maturity is relatively advanced because performance was shown in serum and compared with gold-standard or clinical chemiluminescence workflows; equipment needs include fluorescence or SPRi instrumentation. | Vesicle capture efficiency, sample volume, vesicle heterogeneity, and need for fluorescence or SPRi instrumentation limit direct comparison with simpler soluble-marker assays. Patient-cohort size and preprocessing requirements should be considered where reported. | [2,10] |
| Protein and enzyme biomarker immunosensing | Antifouling hydrogel electrodes and hydrogel-enhanced electrochemical, PEC, SERS, and fluorescence biosensors | Improves antifouling performance, receptor immobilization, target accessibility, interfacial stability, and signal amplification in biological matrices. | Human epidermal growth factor receptor 2, prostate-specific antigen, matrix metalloproteinase-9, EpCAM, tumor necrosis factor alpha, CYFRA-21-1, CEA, human epididymis protein 4, cancer antigen 125, alpha-fetoprotein, and hyaluronidase | Representative LODs include human epidermal growth factor receptor 2 at 5 picograms per milliliter and 45 picograms per milliliter, prostate-specific antigen at 5.6 picograms per milliliter, matrix metalloproteinase-9 at 10 picomolar, EpCAM at 0.17–0.35 picograms per milliliter, tumor necrosis factor alpha at 1.20 picograms per milliliter, CEA at 0.04567 picograms per milliliter, and human epididymis protein 4 at 2.37 × 10−14 moles per liter; representative ranges include EpCAM at 0.5–60.0 picograms per milliliter, CYFRA-21-1 at 2.5–80 nanograms per milliliter, and CEA at 1–30,000 picograms per milliliter. | Tested in serum, saliva, artificial saliva, urine, pancreatic cancer serum, and other biological matrices; matrix metalloproteinase-9 detection occurred within 30 min; assay times and sample volumes were otherwise not consistently reported. | Reported features include antifouling stability, 48-day CYFRA-21-1 shelf life, serum recoveries of 92.4–106.7% for human epididymis protein 4, and validation of several platforms against ELISA or standard assays. | Clinical relevance is strongest when low LODs are combined with serum, saliva, or urine validation and standard-method agreement; equipment includes electrochemical, PEC, SERS, fluorescence, and immunoassay readouts. | Comparability is limited by differences in antibody or aptamer format, interference testing, matrix dilution, assay time, and dependence on electrochemical, PEC, SERS, fluorescence, or immunoassay instrumentation. Storage stability and batch-to-batch hydrogel fabrication are not consistently reported. | [4,7,9,12,28,30,33,34,35,38,58,63] |
| Multiplexed cancer-marker detection | Multiplex screen-printed carbon electrodes, three-dimensional microfluidic paper-based analytical devices, aptasensors, and microfluidic gel arrays | Supports spatial encoding, multireceptor immobilization, parallel signal readout, and integration of multiple assay chemistries in one hydrogel-enabled format. | Squamous cell carcinoma antigen, CYFRA-21-1, cancer antigen 125, neuron-specific enolase, CEA, cancer antigen 15-3, human chorionic gonadotropin, prostate-specific antigen, and glucose | Multiplex screen-printed carbon electrodes achieved LODs of 5.5 picograms per milliliter for squamous cell carcinoma antigen, 4.8 picograms per milliliter for CYFRA-21-1, 0.0054 units per milliliter for cancer antigen 125, and 2.3 picograms per milliliter for neuron-specific enolase; a lung-marker microfluidic paper-based analytical device detected neuron-specific enolase and CEA at 0.032 and 0.036 picograms per milliliter over 0.1–10,000 picograms per milliliter; a cancer antigen 125 platform achieved 4.4 milliunits per milliliter over 0.01–5000 units per milliliter. | Serum-based or paper-based formats were reported; chemiluminescent signal duration exceeded 60 min for one microfluidic paper-based analytical device system; sample volumes were not reported in the provided summaries. | Cancer antigen 125 and neuron-specific enolase sensitivities were reported as fourfold higher than previous works in one platform; cancer antigen 125 performance matched commercial chemiluminescent microparticle immunoassays. | Multiplexing increases diagnostic relevance by reducing reliance on single markers; maturity is strongest where serum testing or agreement with commercial assays was shown; equipment ranges from screen-printed electrochemical devices to smartphone-readable microfluidic paper-based analytical devices. | Multiplexing increases workflow and calibration complexity. Cross-reactivity, channel-to-channel reproducibility, reagent stability, and need for parallel readout hardware should be considered before comparing LODs with single-marker assays. | [14,15,31,41,42] |
| Point-of-care, portable, and wearable hydrogel biosensors | Smartphone microfluidic paper-based analytical devices, paper-flow devices, microneedles, lab-on-a-needle systems, and wearable sweat sensors | Provides portable sensing interfaces, reagent storage, sample-compatible matrices, mechanical compliance, and responsive visual, electrochemical, or smartphone-readable outputs. | β-Glucan, HPV DNA, hyaluronidase, glucose, aldehyde biomarkers, interleukin-6, and tissue metabolic markers | HPV DNA detection reached 3.76 femtomolar across 10 femtomolar–1 nanomolar in 25 min; hyaluronidase paper-flow detection reached 0.2 units per milliliter in urine; hyaluronidase serum detection showed a 0.6–40 units per milliliter range with a 0.3 units per milliliter LOD; microneedle glucose sensing showed LODs of 0.11–0.46 millimolar; sweat aldehyde sensing achieved a 0.1 picomolar LOD and reported 99% diagnostic accuracy. | Validated in urine, sweat, serum, artificial interstitial fluid, interstitial-fluid phantoms, and hydrogel cancer microenvironment phantoms; HPV detection took 25 min; microneedle repeatability was tested over 14 days. | Microneedle glucose sensing showed <4% relative standard deviation over 14 days; ELISA-validated hyaluronidase serum performance was reported; selectivity was reported for sweat aldehyde and interleukin-6 systems. | Point-of-care testing maturity is strongest when portability is paired with rapid readout, noninvasive matrices, stability, and realistic sample validation; equipment needs range from paper/smartphone formats to wearable electrochemical readouts. | Portable format does not by itself ensure point-of-care testing readiness. Limiting conditions include lighting or imaging control, wearable calibration, reagent storage, user operation, sample collection variability, and whether the system avoids precision laboratory equipment. | [3,6,8,40,52,56,59,94,109] |
| Cell-based and tumor-microenvironment sensing | Three-dimensional hydrogel cell scaffolds, impedance arrays, ECL cell sensors, ROS-responsive conductive hydrogels, and metabolic imaging hydrogels | Provides tissue-like three-dimensional environments, cell encapsulation, mechanical responsiveness, and local readout of metabolic or redox activity. | H2O2, nitric oxide, lactate, pH, ROS/GSH-associated signals, cancer cell invasion, and three-dimensional viability | H2O2 detection reached 0.01 micromolar in prostate-cell systems and 0.023 nanomolar in breast cancer subtype monitoring; pH probes resolved 0.1 pH unit across pH 5.8–7.4; cancer cell discrimination was shown through conductivity, resistance, fluorescence, and photothermal responses. | Demonstrated in prostate cells, breast cancer subtypes, isolated cancer cells, three-dimensional cultures, tumor-bearing mice, and cancer microenvironment models; assay times and sample volumes were not consistently reported. | Selectivity was shown through cancer-versus-normal cell discrimination, subtype-dependent H2O2 release, and resistance or fluorescence responses to tumor-microenvironmental signals. | These systems are most relevant for mechanistic cancer biology, tumor-microenvironment profiling, and therapy-response studies rather than immediate replacement of clinical diagnostic assays; equipment includes impedance, ECL, fluorescence, photothermal, and smartphone-linked readouts. | Readouts depend on biological model reproducibility, hydrogel mechanics, cell density, culture duration, diffusion gradients, and stimulation conditions. These systems should not be ranked directly against liquid-biopsy assays based on LOD alone. | [70,71,72,73,75,76,77,78,110] |
| Drug-response and therapeutic-monitoring platforms | Impedance hydrogel cultures, injectable or responsive hydrogels, DNA hydrogel drug carriers, and bioinks | Enables three-dimensional drug-response modeling, controlled release, cell-compatible scaffolding, and combined sensing/intervention in tumor-relevant settings. | Doxorubicin response, drug diffusion, controlled release, recurrence suppression, and therapeutic delivery | Systems enabled half-maximal inhibitory concentration analysis, 24/48 h chemosensitivity testing, approximately 32 h controlled release, ninefold increased doxorubicin potency, >95% viability in printed constructs, >99.9% antimicrobial effectiveness, and approximately 100% suppression of recurrence and lung metastasis in one mouse model. | Validated in three-dimensional cultures, human hepatocellular carcinoma G2 cytotoxicity testing, xenografted breast cancer mice, tumor-bearing mice, endothelial-cell biocompatibility testing, and bioprinted constructs; assay times and sample volumes were not consistently reported. | Reported outcomes include low cytotoxicity, high endothelial-cell biocompatibility, and high cell viability in printed constructs. | These platforms are translationally adjacent to biomarker biosensing when they support treatment-response assessment, tumor-model monitoring, or integrated detection/intervention; they should not be conflated with direct diagnostic biomarker assays. | Therapeutic efficacy and biosensing performance are not interchangeable. Key constraints include animal-model dependence, formulation complexity, release reproducibility, manufacturing scalability, and whether biomarker readout is central or secondary. | [50,53,66,67,68,69,89,91,110,112] |
| Roadmap Stage | High-Level Take-Home Synthesis | What We Know | What We Do Not Yet Know | Future Priorities and Practice-Facing Direction |
|---|---|---|---|---|
| Rationale: why hydrogels matter for cancer biosensing | The field is driven by a clear clinical need: detecting low-abundance, heterogeneous, and dynamic cancer signals in accessible samples without relying exclusively on centralized laboratory workflows. | Hydrogel biosensors are repeatedly positioned for early detection, liquid biopsy, tumor-marker monitoring, multiplex profiling, disease modeling, and treatment-response assessment. Their value lies in combining biomarker responsiveness with biocompatibility, antifouling behavior, hydrated transport, and compatibility with complex samples. | The clinical niche is not always sharply defined. Many platforms show strong analytical performance, but it is often unclear whether they are intended for screening, triage, prognosis, surveillance, therapy monitoring, or preclinical modeling. | Future studies should define the intended clinical decision point before platform optimization, including screening, diagnostic confirmation, recurrence surveillance, therapy selection, or response monitoring. |
| Mechanism: how hydrogels convert biology into signal | Hydrogels are most persuasive when they are integral to transduction rather than passive supports. | Mechanistic roles include programmable DNA-network reconfiguration, gated release, enzymatic degradation, catalytic amplification, antifouling capture, redox or pH responsiveness, optical/plasmonic localization, electrochemical charge regulation, and three-dimensional cell-based signal acquisition. | Mechanisms remain difficult to compare across platforms because studies use different targets, matrices, readouts, amplification chemistries, and reporting standards. | Prioritize mechanism-to-use-case matching: DNA hydrogels for nucleic-acid liquid biopsy, antifouling conductive hydrogels for protein biomarkers in biofluids, responsive hydrogels for tumor-microenvironment signals, and three-dimensional hydrogels for dynamic cell-state monitoring. |
| Platform design: what engineering strategies are converging | The field is not converging on a single hydrogel material; it is converging on modular design logic. | Major design patterns include hydrogel-modified electrodes, nanomaterial-loaded hydrogel matrices, programmable DNA hydrogels, paper/microfluidic systems, wearable or optical formats, and three-dimensional scaffold or bioink platforms. Hydrogels structure the biomarker-accessible environment, while nanomaterials provide optical, electrical, catalytic, magnetic, or photothermal function. | It remains unclear which architectures are most scalable, manufacturable, shelf-stable, or compatible with clinical quality-control requirements. | Move from “new platform demonstration” to “translation-ready architecture,” with attention to reproducible fabrication, batch-to-batch consistency, storage stability, calibration strategy, user workflow, and compatibility with clinical sample handling. |
| Validation/trials: how close the evidence is to clinical testing | The evidence base is strongest at the analytical and early translational validation stage, while true clinical-trial-level evidence remains limited. | Several platforms have been tested in serum, saliva, urine, plasma, blood, ascites, cervical brush samples, sweat, artificial interstitial fluid, patient-derived samples, and cancer-mimicking phantoms. Some were benchmarked against ELISA, RT-PCR, qPCR, chemiluminescence immunoassays, or clinical classification workflows. | Most studies still lack large, prospective, multicenter patient cohorts, blinded validation, standardized preanalytical protocols, and comparison against clinically accepted decision thresholds. | The next step should be staged validation: analytical validation, matrix validation, retrospective patient testing, blinded prospective cohorts, and clinical utility studies showing whether the biosensor changes decisions or improves workflow. |
| Populations and samples: who and what the platforms are meant to test | Hydrogel biosensing is expanding from isolated biomarkers toward biologically richer cancer contexts. | Target contexts include miRNAs, cfDNA, HPV DNA, extracellular vesicles, circulating tumor cells, soluble proteins, tumor enzymes, immune markers, redox/metabolic signals, spheroids, three-dimensional cultures, and animal or tumor-like models. Sample contexts span serum, plasma, saliva, urine, sweat, blood, lysates, patient specimens, and tumor-model systems. | Patient populations are often underspecified. Disease stage, tumor subtype, treatment status, comorbidities, benign controls, and longitudinal sampling are not consistently incorporated. | Future work should define clinically meaningful populations, including early-stage versus advanced disease, benign versus malignant lesions, treated versus untreated patients, recurrence-monitoring cohorts, and high-risk screening groups. |
| Outcomes: what success should mean beyond low detection limits | Sensitivity is necessary but insufficient; clinical value depends on whether the platform remains accurate, robust, and interpretable in realistic biological and workflow conditions. | Reported outcomes include ultralow limits of detection, multiplex detection, rapid assay times, smartphone or visual readouts, wearable formats, non-invasive sampling, three-dimensional tumor monitoring, and agreement with standard methods in selected studies. | Many studies do not yet demonstrate clinically actionable thresholds, predictive values, reproducibility across operators, robustness across sample variability, or added value over existing assays. | Report performance using clinically interpretable metrics, including sensitivity, specificity, AUC, positive and negative predictive value, reproducibility, interference testing, stability, turnaround time, cost, and decision impact. |
| Clinical practice: where translation is most plausible first | Near-term clinical adoption is most plausible where hydrogels solve a practical workflow problem, not merely where they improve signal intensity. | Strong practice-facing opportunities include minimally invasive liquid biopsy, point-of-care testing, multiplex biomarker panels, saliva-, urine-, or sweat-accessible monitoring, and three-dimensional treatment-response platforms. Point-of-care value is strongest when quantitative performance is preserved in realistic matrices while reducing instrumentation, sample volume, or assay complexity. | The clinical workflow fit remains uncertain for many platforms: who performs the test, where it is performed, how results are interpreted, and how results alter care are often not addressed. | Develop use-case-specific prototypes, including clinic-based rapid triage tests, home or wearable surveillance systems, laboratory-compatible liquid-biopsy enrichment tools, and oncology drug-response assays for preclinical or personalized testing. |
| Future gaps: what must be solved to move from evidence to practice | The central gap is no longer whether hydrogel biosensors can detect cancer-relevant signals; it is whether they can do so reproducibly, at scale, in clinically defined scenarios, and with actionable interpretation. | The manuscript shows a broad and technically mature foundation across materials, mechanisms, targets, readouts, and validation contexts. | Open questions include standardization, manufacturability, regulatory readiness, long-term storage, biofouling under real-world use, multibiomarker interpretation, clinical thresholds, and integration with existing oncology pathways. | The field should prioritize clinically anchored benchmarking, harmonized reporting standards, prospective validation, multiplex interpretation models, manufacturable hydrogel formats, and evidence that hydrogel-enabled testing improves diagnostic or monitoring decisions. |
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© 2026 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license.
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Omidian, H.; Mfoafo, K.A. Programmable Hydrogel Biosensors for Cancer Biomarkers. J. Nanotheranostics 2026, 7, 17. https://doi.org/10.3390/jnt7030017
Omidian H, Mfoafo KA. Programmable Hydrogel Biosensors for Cancer Biomarkers. Journal of Nanotheranostics. 2026; 7(3):17. https://doi.org/10.3390/jnt7030017
Chicago/Turabian StyleOmidian, Hossein, and Kwadwo A. Mfoafo. 2026. "Programmable Hydrogel Biosensors for Cancer Biomarkers" Journal of Nanotheranostics 7, no. 3: 17. https://doi.org/10.3390/jnt7030017
APA StyleOmidian, H., & Mfoafo, K. A. (2026). Programmable Hydrogel Biosensors for Cancer Biomarkers. Journal of Nanotheranostics, 7(3), 17. https://doi.org/10.3390/jnt7030017

