Development and Validation of Nanoedw 1.0: An Integrated Computational Tool for Drug Delivery Research and Nanotechnology Applications
Abstract
1. Introduction
2. Materials and Methods
2.1. Software Architecture and Design
2.2. User Interface and Data Visualization
2.3. Experimental Validation
2.4. Statistical Analysis
3. Results
3.1. Calibration Curve Validation
3.2. Encapsulation Efficiency (EE%) Validation
3.3. Validation in Release Kinetics Profile Tests
3.4. Future Perspectives
4. Discussion
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
- Rajput, A.; Shevalkar, G.; Pardeshi, K.; Pingale, P. Computational Nanoscience and Technology. OpenNano 2023, 12, 100147. [Google Scholar] [CrossRef]
- Vilela Neto, O.P. Intelligent Computational Nanotechnology: The Role of Computational Intelligence in the Development of Nanoscience and Nanotechnology. J. Comput. Theor. Nanosci. 2014, 11, 928–944. [Google Scholar] [CrossRef]
- Judy, E.; Lopus, M.; Kishore, N. Mechanistic Insights into Encapsulation and Release of Drugs in Colloidal Niosomal Systems: Biophysical Aspects. RSC Adv. 2021, 11, 35110–35126. [Google Scholar] [CrossRef] [PubMed]
- Ashwini, T.; Narayan, R.; Shenoy, P.A.; Nayak, U.Y. Computational Modeling for the Design and Development of Nano Based Drug Delivery Systems. J. Mol. Liq. 2022, 368, 120596. [Google Scholar] [CrossRef]
- Antunes, A.; Fierro, I.; Guerrante, R.; Mendes, F.; de M. Alencar, M.S. Trends in Nanopharmaceutical Patents. Int. J. Mol. Sci. 2013, 14, 7016–7031. [Google Scholar] [CrossRef] [PubMed]
- Delgado, R. Misuse of Beer-Lambert Law and Other Calibration Curves. R. Soc. Open Sci. 2022, 9, 211103. [Google Scholar] [CrossRef]
- Jyothi, N.V.N.; Prasanna, P.M.; Sakarkar, S.N.; Prabha, K.S.; Ramaiah, P.S.; Srawan, G.Y. Microencapsulation Techniques, Factors Influencing Encapsulation Efficiency. J. Microencapsul. 2010, 27, 187–197. [Google Scholar] [CrossRef]
- Feng, S.-S.; Chong, S.; Rompas, J. (Eds.) Chemotherapeutic Engineering: Collected Papers of Si-Shen Feng—A Tribute to Shu Chien on His 82nd Birthday; Jenny Stanford Publishing: New York, NY, USA, 2014. [Google Scholar] [CrossRef]
- Zhang, Z.; Feng, S.S. The Drug Encapsulation Efficiency, in Vitro Drug Release, Cellular Uptake and Cytotoxicity of Paclitaxel-Loaded Poly(Lactide)-Tocopheryl Polyethylene Glycol Succinate Nanoparticles. In Chemotherapeutic Engineering: Collected Papers of Si-Shen Feng—A Tribute to Shu Chien on His 82nd Birthday; Jenny Stanford Publishing: New York, NY, USA, 2013. [Google Scholar]
- Paarakh, M.P.; Jose, P.A.; Setty, C.M.; Peterchristoper, G.V. Release Kinetics—Concepts and Applications. Int. J. Pharm. Res. Technol. 2019, 8, 12–20. [Google Scholar]
- AlMajed, Z.; Salkho, N.M.; Sulieman, H.; Husseini, G.A. Modeling of the In Vitro Release Kinetics of Sonosensitive Targeted Liposomes. Biomedicines 2022, 10, 3139. [Google Scholar] [CrossRef]
- Baishya, H. Application of Mathematical Models in Drug Release Kinetics of Carbidopa and Levodopa ER Tablets. J. Dev. Drugs 2017, 6, 171. [Google Scholar] [CrossRef]
- Patra, J.K.; Das, G.; Fraceto, L.F.; Campos, E.V.R.; Rodriguez-Torres, M.D.P.; Acosta-Torres, L.S.; Diaz-Torres, L.A.; Grillo, R.; Swamy, M.K.; Sharma, S.; et al. Nano Based Drug Delivery Systems: Recent Developments and Future Prospects. J. Nanobiotechnology 2018, 16, 71. [Google Scholar] [CrossRef]
- Singh, A.P.; Biswas, A.; Shukla, A.; Maiti, P. Targeted Therapy in Chronic Diseases Using Nanomaterial-Based Drug Delivery Vehicles. Signal Transduct. Target. Ther. 2019, 4, 33. [Google Scholar] [CrossRef]
- Brugnera, M.; Vicario-De-la-torre, M.; Andrés-Guerrero, V.; Bravo-Osuna, I.; Molina-Martínez, I.T.; Herrero-Vanrell, R. Validation of a Rapid and Easy-to-Apply Method to Simultaneously Quantify Co-Loaded Dexamethasone and Melatonin PLGA Microspheres by HPLC-UV: Encapsulation Efficiency and In Vitro Release. Pharmaceutics 2022, 14, 288. [Google Scholar] [CrossRef] [PubMed]
- Branquinho, R.T.; Mosqueira, V.C.F.; Kano, E.K.; De Souza, J.; Dorim, D.D.R.; Saúde-Guimarães, D.A.; De Lana, M. HPLC-DAD and UV-Spectrophotometry for the Determination of Lychnopholide in Nanocapsule Dosage Form: Validation and Application to Release Kinetic Study. J. Chromatogr. Sci. 2014, 52, 19–26. [Google Scholar] [CrossRef][Green Version]
- Zuo, J.; Gao, Y.; Bou-Chacra, N.; Löbenberg, R. Evaluation of the DDSolver Software Applications. Biomed. Res. Int. 2014, 2014, 204925. [Google Scholar] [CrossRef] [PubMed]
- Haas, C.P.; Lübbesmeyer, M.; Jin, E.H.; McDonald, M.A.; Koscher, B.A.; Guimond, N.; Di Rocco, L.; Kayser, H.; Leweke, S.; Niedenführ, S.; et al. Open-Source Chromatographic Data Analysis for Reaction Optimization and Screening. ACS Cent. Sci. 2023, 9, 307–317. [Google Scholar] [CrossRef] [PubMed]
- Mendyk, A.; Jachowicz, R.; Fijorek, K.; Dorozyński, P.; Kulinowski, P.; Polak, S. KinetDS: An Open Source Software for Dissolution Test Data Analysis. Dissolut Technol. 2012, 19, 6–11. [Google Scholar] [CrossRef]
- Virtanen, P.; Gommers, R.; Oliphant, T.E.; Haberland, M.; Reddy, T.; Cournapeau, D.; Burovski, E.; Peterson, P.; Weckesser, W.; Bright, J.; et al. SciPy 1.0: Fundamental Algorithms for Scientific Computing in Python. Nat. Methods 2020, 17, 261–272. [Google Scholar] [CrossRef]
- El Hachimi, C.; Belaqziz, S.; Khabba, S.; Chehbouni, A. Data Science Toolkit: An All-in-One Python Library to Help Researchers and Practitioners in Implementing Data Science-Related Algorithms with Less Effort. Softw. Impacts 2022, 12, 100240. [Google Scholar] [CrossRef]
- Cox, P.B.; Gupta, R. Contemporary Computational Applications and Tools in Drug Discovery. ACS Med. Chem. Lett. 2022, 13, 1016–1029. [Google Scholar] [CrossRef]
- Zhang, Y.; Huo, M.; Zhou, J.; Zou, A.; Li, W.; Yao, C.; Xie, S. DDSolver: An Add-in Program for Modeling and Comparison of Drug Dissolution Profiles. AAPS J. 2010, 12, 263–271. [Google Scholar] [CrossRef] [PubMed]
- Van Der Walt, S.; Colbert, S.C.; Varoquaux, G. The NumPy Array: A Structure for Efficient Numerical Computation. Comput. Sci. Eng. 2011, 13, 22–30. [Google Scholar] [CrossRef]
- Harris, C.R.; Millman, K.J.; van der Walt, S.J.; Gommers, R.; Virtanen, P.; Cournapeau, D.; Wieser, E.; Taylor, J.; Berg, S.; Smith, N.J.; et al. Array Programming with NumPy. Nature 2020, 585, 357–362. [Google Scholar] [CrossRef] [PubMed]
- Elan Maulani, I.; Azis, I.; Cahya, M.N.; Komarudin, K.; Sagita, A. bahar Implementation of Object-Oriented Programming with Pyqt: Development of Calculation Application. Devotion J. Res. Community Serv. 2024, 5, 156–163. [Google Scholar] [CrossRef]
- Bhoyarkar, A.; Solanki, A.; Balbudhe, A. Application Development Using Kivy Framework. IJARCCE 2019, 8, 53–58. [Google Scholar] [CrossRef]
- Rappold, B. Best Practices for Routine Operation of Clinical Mass Spectrometry Assays. In Mass Spectrometry for the Clinical Laboratory; Academic Press: Cambridge, MA, USA, 2017. [Google Scholar]
- Miroshnichenko, I.I.; Shilov, Y.E. Analysis of Biological Samples in a Contemporary Laboratory Practice (Review). Drug Dev. Regist. 2019, 8, 115–120. [Google Scholar] [CrossRef]
- Mittal, V. Encapsulation Nanotechnologies; Wiley: Hoboken, NJ, USA, 2013; ISBN 9781118344552. [Google Scholar]
- Mishra, M. Handbook of Encapsulation and Controlled Release; CRC Press: Boca Raton, FL, USA, 2015. [Google Scholar]
- Polli, J.E.; Rekhi, G.S.; Augsburger, L.L.; Shah, V.P. Methods to Compare Dissolution Profiles and a Rationale for Wide Dissolution Specifications for Metoprolol Tartrate Tablets. J. Pharm. Sci. 1997, 86, 690–700. [Google Scholar] [CrossRef]
- Costa, P.; Sousa Lobo, J.M. Modeling and Comparison of Dissolution Profiles. Eur. J. Pharm. Sci. 2001, 13, 123–133. [Google Scholar] [CrossRef]
- Koizumi, T.; Ueda, M.; Kakemi, M.; Kameda, H. Rate of Release of Medicaments from Ointment Bases Containing Drugs in Suspension. Chem. Pharm. Bull. 1975, 23, 3288–3292. [Google Scholar] [CrossRef]
- Wu, I.Y.; Bala, S.; Škalko-Basnet, N.; di Cagno, M.P. Interpreting Non-Linear Drug Diffusion Data: Utilizing Korsmeyer-Peppas Model to Study Drug Release from Liposomes. Eur. J. Pharm. Sci. 2019, 138, 105026. [Google Scholar] [CrossRef]
- Peppas, N.A. Analysis of Fickian and Non-Fickian Drug Release from Polymers. Pharm. Acta Helv. 1985, 60, 110–111. [Google Scholar] [PubMed]
- Peppas, N.A.; Sahlin, J.J. A Simple Equation for the Description of Solute Release. III. Coupling of Diffusion and Relaxation. Int. J. Pharm. 1989, 57, 169–172. [Google Scholar] [CrossRef]
- Langenbucher, F. Letters to the Editor: Linearization of Dissolution Rate Curves by the Weibull Distribution. J. Pharm. Pharmacol. 1972, 24, 979–981. [Google Scholar] [CrossRef] [PubMed]
- Hopfenberg, H.B. Controlled Release from Erodible Slabs, Cylinders, and Spheres. In Controlled Release Polymeric Formulations; American Chemical Society (ACS): Washington, DC, USA, 1976; Volume 33. [Google Scholar]
- Hixson, A.W.; Crowell, J.H. Dependence of Reaction Velocity upon Surface and Agitation. Ind. Eng. Chem. 1931, 23, 923–931. [Google Scholar] [CrossRef]
- Shah, V.P.; Tsong, Y.; Sathe, P.; Liu, J.P. In Vitro Dissolution Profile Comparison- Statistics and Analysis of the Similarity Factor, F2. Pharm. Res. 1998, 15, 889–896. [Google Scholar] [CrossRef]
- Pabón, C.V.; Frutos, P.; Lastres, J.L.; Frutos, G. Matrix Tablets Containing HPMC and Polyamide 12: Comparison of Dissolution Data Using the Gompertz Function. Drug Dev. Ind. Pharm. 1994, 20, 2509–2518. [Google Scholar] [CrossRef]
- TKInter. Tkinter. Python Standard GUI Library. Available online: https://docs.python.org/3/library/tkinter.html (accessed on 3 December 2025).
- Montenegro, E.D.; Nunes, J.M.; Ramos, I.F.S.; Almeida, R.G.; da Silva Júnior, E.N.; Rizzo, M.S.; da Silva-Filho, E.C.; Ribeiro, A.B.; Silva, H.S.; Costa, M.P. Characterization of the Interaction of a Novel Anticancer Molecule with PMMA, PCL, and PLGA Polymers via Computational Chemistry. Appl. Sci. 2025, 15, 468. [Google Scholar] [CrossRef]
- Barnett, V.; Neter, J.; Wasserman, W. Applied Linear Statistical Models. J. R. Stat. Soc. Ser. A 1975, 138, 258. [Google Scholar] [CrossRef]
- Ober, P.B. Introduction to Linear Regression Analysis. J. Appl. Stat. 2013, 40, 2775–2776. [Google Scholar] [CrossRef]
- Cheng, W.L.; Markus, C.; Lim, C.Y.; Tan, R.Z.; Sethi, S.K.; Loh, T.P. Calibration Practices in Clinical Mass Spectrometry: Review and Recommendations. Ann. Lab. Med. 2023, 43, 5–18. [Google Scholar] [CrossRef]
- Chen, H.Y.; Chen, C. Evaluation of Calibration Equations by Using Regression Analysis: An Example of Chemical Analysis. Sensors 2022, 22, 447. [Google Scholar] [CrossRef] [PubMed]
- Azadi, S.; Ashrafi, H.; Azadi, A. Mathematical Modeling of Drug Release from Swellable Polymeric Nanoparticles. J. Appl. Pharm. Sci. 2017, 7, 418. [Google Scholar] [CrossRef]
- Mendes, A.N.; Hubber, I.; Siqueira, M.; Barbosa, G.M.; De Lima Moreira, D.; Holandino, C.; Pinto, J.C.; Nele, M. Preparation and Cytotoxicity of Poly (Methyl Methacrylate) Nanoparticles for Drug Encapsulation. In Proceedings of the Macromolecular Symposia, Varanasi, India, 19–21 March 2012; Volume 319. [Google Scholar]
- Ford, J.L.; Mitchell, K.; Rowe, P.; Armstrong, D.J.; Elliott, P.N.C.; Rostron, C.; Hogan, J.E. Mathematical Modelling of Drug Release from Hydroxypropylmethylcellulose Matrices: Effect of Temperature. Int. J. Pharm. 1991, 71, 95–104. [Google Scholar] [CrossRef]
- Bharti Mittu, A.C.; Chauhan, P. Analytical Method Development and Validation: A Concise Review. J. Anal. Bioanal. Tech. 2015, 6, 1. [Google Scholar] [CrossRef]
- Morris, G.M.; Ruth, H.; Lindstrom, W.; Sanner, M.F.; Belew, R.K.; Goodsell, D.S.; Olson, A.J. Software News and Updates AutoDock4 and AutoDockTools4: Automated Docking with Selective Receptor Flexibility. J. Comput. Chem. 2009, 30, 2785–2791. [Google Scholar] [CrossRef]
- Sánchez, A.; Mejía, S.P.; Orozco, J. Recent Advances in Polymeric Nanoparticle-Encapsulated Drugs against Intracellular Infections. Molecules 2020, 25, 3760. [Google Scholar] [CrossRef]
- Ramteke, K.H.; Dighe, P.A.; Kharat, A.R.; Patil, S.V. Mathematical Models of Drug Dissolution: A Review. Sch. Acad. J. Pharm. 2014, 3, 388–396. [Google Scholar]
- Narasimhan, B. Mathematical Models Describing Polymer Dissolution: Consequences for Drug Delivery. Adv. Drug Deliv. Rev. 2001, 48, 195–210. [Google Scholar] [CrossRef]
- Wójcikowski, M.; Siedlecki, P.; Ballester, P.J. Building Machine-Learning Scoring Functions for Structure-Based Prediction of Intermolecular Binding Affinity. In Docking Screens for Drug Discovery; Springer: Berlin/Heidelberg, Germany, 2019; pp. 1–12. [Google Scholar]
- Abdul Raheem, A.K.; Dhannoon, B.N. Automating Drug Discovery Using Machine Learning. Curr. Drug Discov. Technol. 2023, 20, 1. [Google Scholar] [CrossRef]
- Pronobis, W.; Tkatchenko, A.; Müller, K.R. Many-Body Descriptors for Predicting Molecular Properties with Machine Learning: Analysis of Pairwise and Three-Body Interactions in Molecules. J. Chem. Theory Comput. 2018, 14, 2991–3003. [Google Scholar] [CrossRef]
- Yousfan, A.; Al Rahwanji, M.J.; Hanano, A.; Al-Obaidi, H. A Comprehensive Study on Nanoparticle Drug Delivery to the Brain: Application of Machine Learning Techniques. Mol. Pharm. 2024, 21, 333–345. [Google Scholar] [CrossRef]
- Gupta, R.; Srivastava, D.; Sahu, M.; Tiwari, S.; Ambasta, R.K.; Kumar, P. Artificial Intelligence to Deep Learning: Machine Intelligence Approach for Drug Discovery. Mol. Divers. 2021, 25, 1315–1360. [Google Scholar] [CrossRef]
- Salahshoori, I.; Golriz, M.; Nobre, M.A.L.; Mahdavi, S.; Eshaghi Malekshah, R.; Javdani-Mallak, A.; Namayandeh Jorabchi, M.; Ali Khonakdar, H.; Wang, Q.; Mohammadi, A.H.; et al. Simulation-Based Approaches for Drug Delivery Systems: Navigating Advancements, Opportunities, and Challenges. J. Mol. Liq. 2024, 395, 123888. [Google Scholar] [CrossRef]
- Visan, A.I.; Negut, I. Integrating Artificial Intelligence for Drug Discovery in the Context of Revolutionizing Drug Delivery. Life 2024, 14, 233. [Google Scholar] [CrossRef]
- Altarawneh, G.; Thorne, S. A Pilot Study Exploring Spreadsheet Risk in Scientific Research. arXiv 2016, arXiv:1703.09785. [Google Scholar]








| Software | a | b | R2 |
|---|---|---|---|
| NanoEDW 1.0 | 0.1220 | −0.0491 | 0.998 |
| OriginPRO® 2025 | 0.1202 | −0.0397 | 0.999 |
| Spreadsheets | 0.1217 | −0.0488 | 0.998 |
| Models | Parameters NanoEDW 1.0 | R2 NanoEDW 1.0 | Parameters OriginLab® OriginPro 2025 | R2 OriginLab® OriginPro 2025 |
|---|---|---|---|---|
| First-Order | K = 0.4776 ± 0.074 | 0.981 | K = 0.487 ± 0.064 | 0.954 |
| Higuchi | 0.65744 ± 0.198 b = 2.199 ± 0.537 | 0.998 | 0.557 ± 0.019 b = 1.919 ± 0.042 | 0.999 |
| Korsmeyer-Peppas | n = 1.191 ± 0.447 k = 6.425 ± 1.447 | 0.987 | n = 0.991 ± 0.805 k = 7.425 ± 2.805 | 0.989 |
| Weibull | a = 3.297 ± 0.654 b = 1.156 ± 0.139 | 0.998 | a = 3.290 ± 0.871 b = 1.4621 ± 0.058 | 0.997 |
| Hopfenberg | a = 0.134 ± 0.385 b = 0.878 ± 0.289 | 0.986 | a = 0.154 ± 0.053 b = 0.991 ± 0.237 | 0.988 |
| Probit | 1.503 ± 0.165 b = 0.598 ± 0.658 | 0.995 | 1.333 ± 0.516 b = 0.433 ± 0.713 | 0.998 |
| Logistic | 2.658 ± 0.152 1.209 ± 0.019 | 0.999 | 2.557 ± 0.019 1.919 ± 0.019 | 0.999 |
| Gompertz | a = 2.911 ± 0.595 b = 0.645 ± 0.023 | 0.997 | a = 2.900 ± 0.001 b = 0.753 ± 0.004 | 0.984 |
| Gompertz Modified | a = 15.097 ± 7.987 b = 4.678 ± 0.145 k = 1.715 ± 0.038 | 0.998 | a = 15.832 ± 2.949 b = 4.145 ± 0.294 k = 1.666 ± 0.121 | 0.998 |
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Montenegro, E.D.; Rizzo, M.S.; de Sousa e Silva, H.; da Costa, M.P. Development and Validation of Nanoedw 1.0: An Integrated Computational Tool for Drug Delivery Research and Nanotechnology Applications. J 2025, 8, 47. https://doi.org/10.3390/j8040047
Montenegro ED, Rizzo MS, de Sousa e Silva H, da Costa MP. Development and Validation of Nanoedw 1.0: An Integrated Computational Tool for Drug Delivery Research and Nanotechnology Applications. J. 2025; 8(4):47. https://doi.org/10.3390/j8040047
Chicago/Turabian StyleMontenegro, Edwar D., Marcia S. Rizzo, Heurison de Sousa e Silva, and Marcília Pinheiro da Costa. 2025. "Development and Validation of Nanoedw 1.0: An Integrated Computational Tool for Drug Delivery Research and Nanotechnology Applications" J 8, no. 4: 47. https://doi.org/10.3390/j8040047
APA StyleMontenegro, E. D., Rizzo, M. S., de Sousa e Silva, H., & da Costa, M. P. (2025). Development and Validation of Nanoedw 1.0: An Integrated Computational Tool for Drug Delivery Research and Nanotechnology Applications. J, 8(4), 47. https://doi.org/10.3390/j8040047

