Determination of the Genetic Diversity of Avocado (Persea americana Mill.) Germplasm in the Canary Islands (Spain) Using Morphological and ISSR Molecular Markers
Abstract
1. Introduction
2. Materials and Methods
2.1. Prospecting
2.2. Molecular Characterization
2.2.1. DNA Extraction
2.2.2. Preselection of ISSR Primers
2.2.3. DNA Amplification
2.2.4. Binary Data Matrix and Dendrogram
2.3. Morphological Characterisation
3. Results
3.1. Molecular Characterisation
3.2. Morphological Features
3.2.1. Structure of the Main Phenotypic Groupings
3.2.2. Principal Component Analysis
3.3. Molecular Versus Morphological Characterisation
4. Discussion
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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| ID | Island | Municipality | ID | Island | Municipality | ID | Island | Municipality | ID | Island | Municipality |
|---|---|---|---|---|---|---|---|---|---|---|---|
| CA001 | CA | Agaete | LP014 | LP | Los Llanos | LP084 | LP | Santa Cruz | TF064 | TF | La Orotava |
| CA004 | CA | Agaete | LP021 | LP | Los Llanos | LP098 | LP | Breña Baja | TF065 | TF | Güímar |
| CA007 | CA | Agaete | LP026 | LP | Los Llanos | LP103 | LP | Los Llanos | TF066 | TF | La Orotava |
| CA008 | CA | Agaete | LP066 | LP | Santa Cruz | LP104 | LP | El Paso | TF067 | TF | Güímar |
| CA009 | CA | Agaete | LP027 | LP | Los Llanos | LP105 | LP | Santa Cruz | TF068 | TF | Güímar |
| CA010 | CA | Agaete | LP029 | LP | Los Llanos | TF009 | TF | La Orotava | TF069 | TF | Güímar |
| CA012 | CA | Agaete | LP032 | LP | Tijarafe | TF012 | TF | La Orotava | TF071 | TF | La Orotava |
| CA016 | CA | Arucas | LP035 | LP | Tijarafe | TF013 | TF | La Guancha | TF076 | TF | Arona |
| CA019 | CA | Mogán | LP041 | LP | Tijarafe | TF015 | TF | La Orotava | TF078 | TF | Arona |
| CA021 | CA | Mogán | LP042 | LP | Tijarafe | TF019 | TF | La Orotava | TF082 | TF | La Laguna |
| CA023 | CA | Telde | LP044 | LP | Los Llanos | TF020 | TF | La Orotava | TF083 | TF | La Orotava |
| GO001 | GO | S. Sebastián | LP045 | LP | Los Llanos | TF021 | TF | La Orotava | TF084 | TF | La Orotava |
| GO002 | GO | Hermigua | LP050 | LP | Los Llanos | TF024 | TF | La Orotava | TF086 | TF | La Orotava |
| GO004 | GO | S. Sebastián | LP053 | LP | Los Llanos | TF025 | TF | La Orotava | TF090 | TF | Buena Vista |
| GO006 | GO | S. Sebastián | LP054 | LP | Los Llanos | TF027 | TF | La Orotava | TF091 | TF | La Orotava |
| GO009 | GO | Hermigua | LP058 | LP | Santa Cruz | TF033 | TF | Güímar | TF092 | TF | Guía Isora |
| GO012 | GO | Hermigua | LP060 | LP | Santa Cruz | TF045 | TF | La Laguna | TF093 | TF | La Orotava |
| GO013 | GO | Hermigua | LP061 | LP | Santa Cruz | TF053 | TF | Güímar | TF094 | TF | Güímar |
| GO014 | GO | S. Sebastián | LP063 | LP | Santa Cruz | TF056 | TF | Güímar | TF095 | TF | Los Realejos |
| GO015 | GO | S. Sebastián | LP069 | LP | Puntallana | TF059 | TF | Tacoronte | TF096 | TF | Sgo. Teide |
| GO016 | GO | V. Gran Rey | LP079 | LP | Los Llanos | TF060 | TF | Güímar | TF097 | TF | Tacoronte |
| LP001 | LP | Breña Alta | LP081 | LP | Santa Cruz | TF061 | TF | Tacoronte | --- | --- | --- |
| Original Identification | Domain | bp | Optimal Annealing Temperature (°C) 1 | Work References in Avocado |
|---|---|---|---|---|
| A09 | AC(GACA)4 | 18 | 58 | Reyes-Alemán et al., 2013 [16] Ramírez, 2015 (Thesis) [18] |
| HASS 3 | (CAG)5 | 15 | 58 | Bornet & Branchard, 2001 [14] 2 |
| PKBT 2 | (AC)8TT | 18 | 58 | Susilo, K. R., 2010 (Thesis) [39] |
| PKBT 4 | (AG)8AA | 18 | 53 | Susilo, K. R., 2010 (Thesis) [39] |
| PKBT 5 | (AG)8TA | 18 | 53 | Susilo, K. R., 2010 (Thesis) [39] |
| PKBT 6 | (AG)8TT | 18 | 53 | Susilo, K. R., 2010 (Thesis) [39] |
| PKBT 7 | (GA)9A | 19 | 54 | Susilo, K. R., 2010 (Thesis) [39] |
| PKBT 8 | (GA)9C | 19 | 54 | Susilo, K. R., 2010 (Thesis) [39] |
| RAF 4 | (CAA)5 | 15 | 52 | Bornet & Branchard, 2001 [14] 2 |
| UBC 807 | (AG)8T | 17 | 53 | Cuiris-Pérez et al., 2009 [15] Susilo, K. R., 2010 (Thesis) [39] |
| UBC 808 | (AG)8C | 17 | 54 | Cuiris-Pérez et al., 2009 [15] |
| UBC 809 | (AG)8G | 17 | 53 | Cuiris-Pérez et al., 2009 [15] |
| UBC 811 | (GA)8C | 17 | 52 | Cuiris-Pérez et al., 2009 [15] |
| UBC 817 | (CA)8A | 17 | 56 | Cuiris-Pérez et al., 2009 [15] |
| UBC 841 | (GA)8YC | 18 | 52 | Reyes-Alemán et al., 2013, 2016 [16,17] Ramírez, 2015 (Thesis) [18] |
| UBC 844 | (CT)8RC | 18 | 52 | Cuiris-Pérez et al., 2009 [15] |
| UBC 857 | (AC)8YG | 18 | 58 | Reyes-Alemán et al., 2013, 2016 [16,17] Ramírez, 2015 (Thesis) [18] |
| UBC 873 | (GACA)4 | 16 | 53 | Reyes-Alemán et al., 2013 [16] Bornet & Branchard, 2001 [14] 2 |
| UBC 814 | (CT)8A | 17 | 52 | NR |
| UBC 818 | (CA)8G | 17 | 56 | NR |
| UBC 824 | (TC)8G | 17 | 53 | NR |
| UBC 825 | (AC)8T | 17 | 57 | NR |
| UBC 829 | (TG)8C | 17 | 58 | NR |
| UBC 834 | (AG)8YT | 18 | 54 | NR |
| UBC 847 | (CA)8RC | 18 | 57 | NR |
| UBC 868 | (GAA)6 | 18 | 52 | NR |
| UBC 880 | (GGAGA)3 | 15 | 52 | NR |
| UBC810 | (GA)8T | 17 | 52 | NR |
| Cultivar | % Seed | % Peel | % Pulp | % Pulp + Peel |
|---|---|---|---|---|
| ‘Pinkerton’ | 10 | 13 | 77 | 90 |
| ‘Fuerte’ | 15 | 10 | 75 | 85 |
| ‘Gem’ | 15 | 13 | 72 | 85 |
| ‘Lamb Hass’ | 15 | 14 | 71 | 85 |
| ‘Hass’ | 16 | 12 | 72 | 84 |
| ‘Reed’ | 17 | 11 | 72 | 83 |
| ‘Gwen’ | 18 | 13 | 69 | 82 |
| Average | 15.14 | 12.29 | 72.57 | 84.86 |
| Min | 10 | 10 | 69 | 82 |
| Max | 18 | 14 | 77 | 90 |
| Primer Name | Domain | Total Bands 1 | Different Bands 2 | Mb | Pb | P (%) | He | PIC | Rp |
|---|---|---|---|---|---|---|---|---|---|
| UBC 811 | (GA)8C | 657 | 14 | 1 | 13 | 92.9 | 0.71 | 0.50 | 15.10 |
| UBC 841 | (GA)8YC | 478 | 11 | 1 | 10 | 90.9 | 0.75 | 0.50 | 10.99 |
| UBC 807 | (AG)8T | 753 | 18 | 1 | 17 | 94.4 | 0.77 | 0.50 | 17.31 |
| PKBT 7 | (GA)9A | 387 | 10 | 0 | 10 | 100.0 | 0.80 | 0.49 | 8.9 |
| HASS 3 | (CAG)5 | 377 | 10 | 2 | 8 | 80.0 | 0.81 | 0.49 | 8.7 |
| UBC 834 | (AG)8YT | 505 | 10 | 2 | 8 | 80.0 | 0.66 | 0.49 | 11.61 |
| UBC 809 | (AG)8G | 409 | 8 | 0 | 8 | 100.0 | 0.65 | 0.48 | 9.4 |
| RAF 4 | (CAA)5 | 512 | 10 | 2 | 8 | 80.0 | 0.65 | 0.48 | 11.77 |
| UBC 810 | (GA)8T | 318 | 9 | 2 | 7 | 77.8 | 0.84 | 0.48 | 7.31 |
| UBC 825 | (AC)8T | 539 | 16 | 4 | 12 | 75.0 | 0.85 | 0.47 | 12.39 |
| PKBT 8 | (GA)9C | 557 | 20 | 0 | 20 | 100.0 | 0.90 | 0.44 | 12.80 |
| UBC 808 | (AG)8C | 460 | 7 | 2 | 5 | 71.4 | 0.43 | 0.37 | 10.57 |
| UBC 818 | (CA)8G | 492 | 7 | 2 | 5 | 71.4 | 0.35 | 0.31 | 11.31 |
| PKBT 5 | (AG)8TA | 493 | 7 | 1 | 6 | 85.7 | 0.34 | 0.31 | 11.33 |
| TOTAL | 6937 | 157 | 20 | 137 | |||||
| AVERAGE | 495.5 | 11.2 | 1.40 | 9.70 | 85.7 | 0.68 | 0.45 | 11.39 |
| Accession | ISSR | Morphology | Accession | ISSR | Morphology |
|---|---|---|---|---|---|
| CA001 | S | S | LP084 | P | P |
| CA004 | S | S | LP098 | S | S |
| CA007 | S | S | LP103 | S | S |
| CA008 | F | S | LP104 | S | S |
| CA009 | S | S | LP105 | S | S |
| CA010 | S | S | TF009 | S | S |
| CA012 | F | F | TF012 | S | S |
| CA016 | S | S | TF013 | S | S |
| CA019 | F | F | TF015 | S | S |
| CA021 | S | S | TF019 | S | S |
| CA023 | H | H | TF020 | SH | SH |
| GO001 | S | S | TF021 | F | F |
| GO002 | S | S | TF024 | H | H |
| GO004 | F | F | TF025 | S | S |
| GO006 | H | H | TF027 | S | S |
| GO009 | S | S | TF033 | F | F |
| GO012 | H | S | TF045 | LH | LH |
| GO013 | H | H | TF053 | F | F |
| GO014 | P | P | TF056 | S | S |
| GO015 | S | S | TF059 | H | H |
| GO016 | S | S | TF060 | F | F |
| LP001 | S | H | TF061 | H | H |
| LP014 | F | F | TF064 | H | H |
| LP021 | H | S | TF065 | H | H |
| LP026 | H | H | TF066 | H | H |
| LP027 | S | H | TF067 | E | E |
| LP029 | H | H | TF068 | P | P |
| LP032 | H | H | TF069 | P | P |
| LP035 | H | H | TF071 | H | H |
| LP041 | H | H | TF076 | S | S |
| LP042 | F | F | TF078 | F | F |
| LP044 | H | H | TF082 | H | H |
| LP045 | F | F | TF083 | S | S |
| LP050 | F | F | TF084 | S | S |
| LP053 | P | P | TF086 | H | H |
| LP054 | S | S | TF090 | S | S |
| LP058 | H | H | TF091 | H | H |
| LP060 | H | H | TF092 | S | S |
| LP061 | H | H | TF093 | S | S |
| LP063 | H | H | TF094 | H | H |
| LP066 | S | S | TF095 | S | S |
| LP069 | P | P | TF096 | H | H |
| LP079 | H | H | TF097 | H | H |
| LP081 | S | S |
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Rodríguez, L.; Hormaza, J.I.; Laich, F.; Pérez, V.; Medina-Alonso, M.G.; Ríos, D. Determination of the Genetic Diversity of Avocado (Persea americana Mill.) Germplasm in the Canary Islands (Spain) Using Morphological and ISSR Molecular Markers. Horticulturae 2026, 12, 182. https://doi.org/10.3390/horticulturae12020182
Rodríguez L, Hormaza JI, Laich F, Pérez V, Medina-Alonso MG, Ríos D. Determination of the Genetic Diversity of Avocado (Persea americana Mill.) Germplasm in the Canary Islands (Spain) Using Morphological and ISSR Molecular Markers. Horticulturae. 2026; 12(2):182. https://doi.org/10.3390/horticulturae12020182
Chicago/Turabian StyleRodríguez, Lorenzo, José Ignacio Hormaza, Federico Laich, Verónica Pérez, María Guacimara Medina-Alonso, and Domingo Ríos. 2026. "Determination of the Genetic Diversity of Avocado (Persea americana Mill.) Germplasm in the Canary Islands (Spain) Using Morphological and ISSR Molecular Markers" Horticulturae 12, no. 2: 182. https://doi.org/10.3390/horticulturae12020182
APA StyleRodríguez, L., Hormaza, J. I., Laich, F., Pérez, V., Medina-Alonso, M. G., & Ríos, D. (2026). Determination of the Genetic Diversity of Avocado (Persea americana Mill.) Germplasm in the Canary Islands (Spain) Using Morphological and ISSR Molecular Markers. Horticulturae, 12(2), 182. https://doi.org/10.3390/horticulturae12020182

