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Article

Aspergillus-Derived Cellulase Preparation Exhibits Prebiotic-like Effects on Gut Microbiota in Rats

1
School of Life Sciences, Anhui University, Hefei 23061, China
2
Graduate School of Integrated Sciences for Life, Hiroshima University, Higashi, Hiroshima 739-8528, Japan
3
Institute for Advanced Biosciences, Keio University, Tsuruoka 997-0052, Japan
4
Transborder Medical Research Center, Faculty of Medicine, University of Tsukuba, Tsukuba 305-8575, Japan
5
Gut Environmental Design Group, Kanagawa Institute of Industrial Science and Technology, Kawasaki 210-0821, Japan
6
Amano Enzyme Inc., Nagoya 460-8630, Japan
*
Authors to whom correspondence should be addressed.
Fermentation 2022, 8(2), 71; https://doi.org/10.3390/fermentation8020071
Submission received: 19 January 2022 / Revised: 5 February 2022 / Accepted: 6 February 2022 / Published: 8 February 2022
(This article belongs to the Special Issue Fermented Foods and Microbes Related to Health)

Abstract

:
Aspergillus-derived cellulase, which is involved in the production of Aspergillus-fermented foods, has been employed in the food and animal feed industries. However, the effect of dietary Aspergillus cellulase on health is poorly understood. Previously, we discovered that supplemental Aspergillus-derived protease and lipase preparations had substantial bifidogenic effects on rats fed a high-fat diet. Therefore, this study reports on the effects of a 0.1% dietary Aspergillus-derived cellulase preparation (CEL) on the gut microbiota of rats fed a high-fat diet. Gene sequencing analysis of 16S rRNA revealed that CEL treatment markedly affected the microbiota profiles of the cecal contents (p < 0.05). Notably, CEL markedly increased the relative abundance (RA) of typical probiotics, such as Bifidobacterium and Lactobacillus, at the genus level (28- and 5-fold, respectively, p < 0.05). Similarly, at the family level, CEL treatment significantly increased the RA of Bifidobacteriaceae and Lactobacillaceae (p < 0.05). Furthermore, CEL increased the RA of other genera, such as Collinsella and Enterococcus, but decreased the RA of Oscillospira, Dorea and Coprobacillus (p < 0.05). The effects on these genera are similar to those reported for typical prebiotic oligosaccharides. Overall, this study demonstrates the prebiotic-like effects of dietary CEL by significantly increasing Bifidobacterium and Lactobacillus abundance.

1. Introduction

Aspergillus species, such as Aspergillus oryzae and Aspergillus niger, have been used in the food fermentation industry in Japan and East Asia. Extracellular hydrolysis enzymes, which are responsible for fermentation during the Aspergillus-associated fermentation process, are produced and released into the reaction system [1]. The extracted Aspergillus enzymes, such as proteases, lipases, amylases and cellulases, have been used in food processing. Previously, we found that dietary supplementation with an A. oryzae-derived protease preparation and purified acid protease caused a bifidogenic effect by striking an elevation in the cecal levels of Bifidobacterium, a typical probiotic (beneficial bacteria for host health), in rats fed a high-fat (HF) diet [2,3]. We speculated that the increase in free amino acids (available amino acids) in the gut, induced by supplemental Aspergillus proteases, promotes Bifidobacterium growth [4]. The effect of an Aspergillus protease preparation is similar to that of prebiotics, such as short-chain non-digestible carbohydrates, e.g., fructo-oligosaccharides (FOS) and galacto-oligosaccharides (GOS), which can increase the number of typical probiotics, Bifidobacterium and Lactobacillus [5]. Prebiotics are well known to be selectively utilized by live probiotics, and promote the growth of probiotics, resulting in health benefits for the host [5]. A subsequent study in our laboratory demonstrated the powerful bifidogenic effect of Aspergillus lipase in rats fed an HF diet [6].
Recently, we carried out a preliminary investigation into the bifidogenic effects of several other digestive enzyme preparations derived from Aspergillus in rats fed an HF diet. Using quantitative polymerase chain reaction (qPCR) analysis, we found a remarkable increase in the cecal abundance of major probiotics, including Lactobacillus and Bifidobacterium bacteria, following consumption of an Aspergillus-derived cellulase preparation (CEL). Generally, cellulase enzymes, such as β-1,4-endoglucanase, cellobiohydrolase and β-glucosidase, degrade cellulose to β-glucose [7]. Cellulase enzymes have been widely used in the food and animal feed industries to improve nutrient availability and promote antioxidant properties by releasing antioxidants, such as polyphenols [8,9]. Furthermore, there are many applications of cellulase in the food industry, including the tenderization of fruits, clarification of fruit juices, extraction of flavoring materials and essential oils, and improvement in the aroma and taste of food items [10]. In the production of Aspergillus-fermented foods, Aspergillus-derived cellulase is thought to play an important role in the fermentation process [1,11]. Additionally, Aspergillus cellulase is included as a dietary enzyme supplement for gut health [12]. However, to the best of our knowledge, limited information is available regarding how dietary exogenous cellulase modulates the gut environment. In the present study, we hypothesized that dietary supplemental CEL modulates the composition of the gut microbiota. Thus, this study used 16S rRNA gene sequencing analysis to examine the effect of CEL on the gut microbiota in rats fed an HF diet. The study was conducted with rats fed an HF diet, since HF diet-induced colon dysbiosis, inflammation and diseases have been reported to be suppressed by dietary prebiotic oligosaccharides [13]. Herein, we report the first evidence for the prebiotic-like effect of supplemental CEL on gut microbiota in rats.

2. Materials and Methods

2.1. Animals and Diets

Sixteen male Sprague Dawley rats (four weeks old) were purchased from Charles River, Japan. The rats were individually housed in cages in a controlled-temperature environment (23 ± 2 °C), a 12 h light–dark cycle and relative humidity of 50%–60%. After being acclimatized for 7 days, the rats were randomly divided into the following two groups based on their diet: an HF diet (control; Ctrl) [2] or an HF diet mixed with 0.1% (w/w) CEL (A. niger-derived cellulase preparation, commercial name: Cellulase A “Amano” 3, Amano Enzyme Inc. Nagoya, Japan). The optimum pH was 4.5 (stable at pH 2.0–8.0), and the cellulase activity was 30,000 U/g at pH 4.5. The optimum temperature was 55 °C. CEL had slight activities of protease and lipase equivalent to 3% of the protease activity of Aspergillus protease preparation (Protease A “Amano” SD, Amano Enzyme Inc. Nagoya, Japan) used in our study [6] and to less than 0.1% of the lipase activity of Aspergillus lipase preparation (Lipase AP12, Amano Enzyme Inc. Nagoya, Japan) used in our study [6]). The HF diet contained 30% beef tallow, 20% casein, 0.3% L-cystine, 1% vitamin mixture (AIN-93), 3.5% mineral mixture (AIN-93G), 5% cellulose, 20% sucrose and 20.2% α-corn starch. During the two-week experimental period, equal amounts of the experimental diets were given daily in food cups (9, 10, 12, 14, and 15 g on days 1, 2–4, 5–7, 8–12, and 13–14, respectively) to prevent differences in food intake. All of the given diet was consumed each day. The rats had ad libitum access to drinking water. The study protocols were approved by the Ethics Committee of Hiroshima University (protocol identity No. C15-12).

2.2. Sample Collection

At the end of the two-week treatment period, the rats were anesthetized (13:00–15:00 h) by inhaling isoflurane in a desiccator to minimize suffering, and then euthanized by decapitation. The cecum was immediately excised, and its contents were removed entirely, weighed, and stored at −80 °C until subsequent analysis of cecal microbiota and organic acids.

2.3. 16S rRNA Gene-Based Microbiome Analysis

Total bacterial DNA in cecal contents was extracted using the QIAamp Stool Mini Kit, according to the manufacturer’s instructions. Then, extracted bacterial DNA was quantified using NanoDrop spectrometry (NanoDrop Technology, Wilmington, DL, USA). The V1–V2 region of the 16S rRNA genes was amplified from the DNA isolated from cecal contents using the following bacterial universal primer set: 27F (5′- ACACTCTTTCCCTACACGACGCTCTTCCGATCTAGRGTTTGATYMTGGCTCAG-3′) and 338R(5′-GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTTGCTGCCTCCCGTAGGAGT-3′). The following library preparation was performed as described previously [14]. Finally, all the barcoded V1–V2 PCR amplicons were sequenced using Illumina MiSeq sequencing technology at a read length of 2 × 300-bp (Illumina, San Diego, CA, USA), based on the manufacturer’s instructions.

2.4. Bioinformatics Analysis

Fast Length Adjustment of SHort reads (FLASH, version 1.2.11) [15] was used to assemble the paired-end reads. Assembled reads with an average 𝑄-value < 25 were filtered out using an in-house script. The same numbers of filtered reads were randomly selected from each sample and used for further analysis [6]. The selected reads were then processed using the Quantitative Insights Into Microbial Ecology pipeline (QIIME, version 1.9.1) [6]. The high-quality sequences were clustered into operational taxonomic units (OTUs) at 97% sequence similarity, and OTUs were assigned to the Greengenes database (version 13.8).

2.5. Analyses of Cecal Organic Acids and pH

The concentrations of organic acids in cecal contents were measured by gas chromatography/mass spectrometry as previously described [16]. For the analysis of pH in the cecal contents, 100 mg of freeze-dried cecal contents was mixed with 1 mL of Milli Q water. The pH value of the sample was measured by COMPACT pH Meter B-71X (Horiba Ltd., Kyoto, Japan).

2.6. Data Analysis

Data are expressed as mean ± standard error. Statistical analysis was performed by Welch’s t-test. Data separation in the principal coordinate analysis (PCoA) ordination of beta diversity was tested using the ANOSIM statistical test in vegan-R, and p-values were generated based on 999 permutations. Some bacterial taxa data were subjected to linear discriminant analysis effect size (LEfSe) analysis, which uses the two-tailed nonparametric Kruskal–Wallis test to evaluate the significance of differences between taxa. p < 0.05 was considered to indicate a statistically significant difference. For the relationship between organic acids and microbiota composition, Pearson’s correlation coefficient (r) was calculated, and the resulting correlation matrix was visualized by using R software (version 4.0.2).

2.7. Evaluation of the Risk of Bias in the Methodology

The risk of bias of this study was assessed using the Systematic Review Centre for Laboratory Animal Experimentation (SYRCLE) risk of bias (RoB) tool [17]. Two independent authors (YY and NK) evaluated the following nine items: (1) sequence generation, (2) baseline characteristics, (3) allocation concealment, (4) random housing, (5) intervention blinding, (6) random outcome assessment, (7) outcome blinding, (8) incomplete outcome data and (9) selective outcome reporting. All items were judged as ‘yes’ (low risk of bias) by two authors (YY and NK) independently.

3. Results

3.1. Food Intake, Body Weight and Cecal Content Weight

The total food intake for the two weeks and the final body weight were unaffected by the dietary treatment (data not shown). The weight of the cecal contents in the CEL group was markedly greater than that in the Ctrl group (5.05 ± 0.31 g and 1.44 ± 0.06 g, respectively; p < 0.05).

3.2. Cecal Microbiota

For 16S rRNA gene sequencing-based microbiota analysis, a total of 417,428 high-quality reads were passed through the QIIME filter. Unweighted and weighted UniFrac PCoA and ANOSIM analyses were conducted to compare the microbial community structures (Figure 1A,B). The results of the UniFrac PCoA and ANOSIM analyses indicated that the microbial composition was distinctly separated between the Ctrl and CEL groups in both the unweighted and weighted analyses (p < 0.05). However, the different alpha-diversity indices indicated a lower bacterial diversity in the CEL group than in the Ctrl group (Figure 1C,D; p < 0.05).
The LEfSe analysis results indicated that 60 bacterial taxa differed between the Ctrl and CEL groups (Figure 2; p < 0.05). This analysis identified that the bacterial species Collinsella, Lactobacillus, Bifidobacterium, Eggerthella, Enterococcus, Akkermansia, Dehalobacterium, Adlercreutzia, Coprobacillus, Dorea, rc4-4, Oscipillospira, Roseburia, Coprococcus, Allobaculum, Ruminococcus and Parabacteroides varied between the two groups.
Among the four most abundant phyla, supplemental CEL significantly decreased the RA of Firmicutes and Bacteroidetes but enriched the RA of Actinobacteria and Proteobacteria (Figure 3A; p < 0.05). The top nine bacterial taxa are displayed at the family level to address the domain taxa of the microbial groups (Figure 3B); supplemental CEL significantly increased the RA of Bifidobacteriaceae (28-fold), Lactobacillaceae (5-fold), Coribacteriaceae (100-fold) and Enterobacteriaceae (13-fold) (p < 0.05). In contrast, it reduced the RA of bacterial taxa, including Lachnospiaceae (1.6-fold), Porphyromonadaceae (15-fold), Ruminococcaceae (77-fold), Clostridiaceae (12-fold) and Erysipelotrichaceae (12-fold) (p < 0.05).
The resulting RA of the genera are shown in Table 1. Supplemental CEL significantly increased the RA of Lactobacillus (5-fold), Collinsella (526-fold), Bifidobacterium (28-fold) and Enterococcus (42-fold) (p < 0.05). Meanwhile, CEL significantly decreased the RA of Parabacteroides (15-fold), Allobaculum (8-fold), Oscillospira (13-fold), rc4-4, Dorea, Coprobacillus and Adlercreutzia (Table 1; p < 0.05). The RA of Ruminococcus and Roseburia were not significantly affected (p > 0.05). The genera with a mean RA less than 0.2% in all the groups were not considered for statistical analysis. The results of the effects of CEL on Lactobacillus and Bifidobacterium levels were similar to those of our preliminary study using qPCR analysis (data not shown).

3.3. Cecal Organic Acids and pH

Table 2 indicates the concentrations of cecal organic acids. Treatment with CEL significantly increased the concentrations of lactate (219-fold) and total organic acids (3-fold), while it significantly decreased those of acetate (4-fold), propionate (10-fold) and n-butyrate (5-fold) (p < 0.05). There was a significant inverse association of lactate with propionate, n-butyrate and acetate levels (r = −0.91, r = −0.82 and r = −0.74, respectively; p < 0.01). Figure 4 further indicates the relationship between the levels of organic acids and various bacteria. There was a strong correlation between lactate levels and the RA of the lactate-producing bacteria Lactobacillus, Bifidobacterium and Enterococcus. In general, the RA of genera such as Oscillospira, Dorea and Coprobacillus had a strong positive association with propionate levels, but a strong negative association with lactate levels (Figure 4). The pH in the cecal contents of the CEL group was significantly lower than that in the Ctrl group (5.40 ± 0.10 and 8.29 ± 0.20, respectively; p < 0.01). There was a strong inverse association between the pH values and the levels of total organic acids (r = −0.97; p < 0.001).

4. Discussion

4.1. Bifidobacterium and Lactobacillus

Our previous study revealed that the dietary consumption of 0.1% Aspergillus lipase and protease preparations for two weeks markedly increased the RA of Bifidobacterium in the cecum, but not Lactobacillus [3,6]. Moreover, this study discovered that the consumption of 0.1% Aspergillus cellulase preparation significantly increased the RA of both probiotics, such as Bifidobacterium and Lactobacillus. Hence, our findings suggest a potential role of Aspergillus cellulase as a prebiotic-like ingredient for enhancing typical probiotic levels, i.e., bacteria of the genera Bifidobacterium and Lactobacillus. Because a wide range of plant-derived foods contain cellulose, cellulase preparations may be effective prebiotics for use in the food and animal feed industries. Currently, various prebiotics are well known for providing health benefits by enhancing the abundance of probiotics [18]. To the best of our knowledge, this study, along with previous studies [3,6] on Aspergillus protease and lipase, implies that Aspergillus-derived cellulase may be a new type of “prebiotic digestive enzyme”, as proposed by our recent study [6].
Previously, we discovered that dietary Aspergillus-derived acid protease had a strong bifidogenic effect [3], but dietary Aspergillus-derived alkaline protease had no effect (Yang et al., unpublished results). In the study, we speculated that the acid protease might be stable under acidic conditions, such as the stomach, and relatively resistant to gut digestive proteases. This might enable the intact acid protease to be delivered to the colon lumen, increasing the number of colonic free amino acids, which are essential for Bifidobacterium growth. In this context, we were interested to see that the CEL remains stable under acidic conditions (pH 2.0). We believe that this acid-resistant property might partially contribute to the substantial increase in Bifidobacterium and Lactobacillus.
Cellulase is responsible for the hydrolytic conversion of cellulose to metabolites, including shorter cello-polysaccharides, cello-oligosaccharides (COS), cellobiose and beta-glucose [7,8]. According to research, dietary supplemental COS significantly enhances the abundance of Lactobacillus bacteria in pig jejunal contents [19]. Furthermore, a recent in vitro study reported that COS treatment significantly enhanced the growth of Lactobacillus bacteria [20]. Thus, the enrichment of Lactobacillus by CEL may be, at least partially, mediated through mechanisms involving COS. However, neither of these studies indicated any effect of COS on the abundance of Bifidobacterium. In this study, CEL treatment markedly increased the RA of Bifidobacterium (a 28-fold increase). Accordingly, COS cannot account for the strong bifidogenic effect of CEL. Therefore, further studies are necessary to elucidate the mechanisms underlying the bifidogenic effect of supplemental Aspergillus cellulase.

4.2. Other Genera

This study further indicated that CEL markedly increased the RA of Collinsella and Enterococcus, but decreased the RA of seven genera, including Parabacteroides, Allobaculum, Oscillospira, rc4-4, Dorea, Coprobacillus and Adlercreutzia. There is very limited information about the effects of prebiotic oligosaccharides on Parabacteroides, Allobaculum, rc4-4 and Adlercreutzia, as well as their roles in gut health. Therefore, the implications of modulating Collinsella, Enterococcus, Oscillospira, Dorea and Coprobacillus by CEL are discussed below.
Accumulating evidence indicates that the treatment of rats with inulin and oligosaccharides enhances Collinsella and Bifidobacterium abundance in the guts [21]. A recent study also revealed that Aspergillus protease and lipase preparations significantly increased the RA of Collinsella [6]. These findings are similar to our current results, indicating a marked increase in the level of Collinsella, as induced by CEL. Collinsella species might be beneficial to health; their enhanced abundance following dietary supplementation with oligofructose-enriched inulin in obese women is associated with an improved profile of hippurate, a microbial co-metabolite, indicating a healthier phenotype [22]. Furthermore, Collinsella exists at lower abundance in patients with inflammatory bowel disease or chronic pancreatitis than in healthy controls [23]. A study by Saalman et al. [24] suggested the potential use of this genus in treating inflammatory bowel disease. Overall, this study suggests that the significant increase in the abundance of Collinsella by CEL is beneficial to health; however, further studies are necessary to validate this position.
Additionally, the current study indicates a higher abundance of Enterococcus species in rats fed CEL. Enterococcus faecalis improves host health [25,26] and is clinically relevant for the treatment of chronic recurrent bronchitis [27]. Some Enterococcus species are employed as probiotics and in the production of feed additives to prevent diarrhea in animals [24]. Interestingly, several Enterococcus species isolated from food possess antioxidant activities [28]. Studies have shown that prebiotic oligosaccharides enhance the abundance of Enterococcus species in mice and in perioperative colorectal cancer patients [29,30]. In addition, our previous study showed a significant increase in the RA of Enterococcus in rats fed Aspergillus protease and lipase preparations [6]. The higher abundance of commensal Enterococcus in rats fed CEL might be beneficial to the rats’ health. However, Enterococcus species are a leading cause of hospital-associated bacteremia, endocarditis and urinary tract infections [31]. Therefore, further studies are necessary to determine the implications of increased Enterococcus in rats administered CEL.
It is worth noting that the CEL treatment significantly decreased the abundance of bacteria from the following genera: Oscillospira, Dorea and Coprobacillus. These findings agree with previous research on typical prebiotic oligosaccharides [32,33,34,35,36], and Aspergillus protease and lipase preparations (6). The current information on the roles of Oscillospira, Dorea and Coprobacillus in gut health is limited. Therefore, the implications of their modulation remain unclear.

4.3. Bacterial Diversity

In this study, contrary to expectations, CEL treatment significantly lowered bacterial diversity compared to the control. Microbial diversity is considered beneficial for community stability and host health [37,38]. However, this may not always be the case, and assumptions of increased diversity could be oversimplified for complicated interactive mechanisms in health and disease [39]. We believe that the reduced bacterial diversity in the CEL group might be associated with the depletion of several bacterial species, including Parabacteroides, Allobaculum, Oscillospira, Dorea and Coprobacillus (Figure 2, Table 1).

4.4. Organic Acids

Furthermore, in this study, it is interesting that CEL markedly increased cecal lactate levels, which were significantly associated with the modulation of the RA of lactate-producing bacteria, such as Lactobacillus, Bifidobacterium and Enterococcus. Meanwhile, CEL decreased the levels of other organic acids, such as acetate, propionate and butyrate. Notably, there was a significant inverse relationship between lactate and propionate levels. Propionate is produced microbially from lactate in the human colon [40]. Thus, CEL may reduce the metabolic conversion of lactate into propionate. Lactate has previously been studied in vitro for its free radical scavenging and antioxidant properties [41]. According to recent studies, lactate exhibits an inflammatory or anti-inflammatory role depending on its effects on immune cells and disease types [42]. Therefore, the implications of lactate accumulation in the CEL group remain unexplored. Additionally, CEL increased the total organic acids and lowered the pH. Interestingly, there was a strong inverse association between total organic acids and pH. The increased organic acids by CEL may cause the lower pH.

4.5. Limitations of This Study

One limitation of this study was that the cellulase preparation was crude and unpurified, despite having high cellulase activity. Therefore, factors related to cellulase preparation, besides the cellulase itself, may be responsible for modulating the gut microbiota. Since the activities of protease and lipase in CEL were slight (Section 2.1: Animals and Diets), the possibility that the protease and lipase in CEL modulate the gut microbiota was neglected. Further research is necessary to determine the effects of purified Aspergillus-derived cellulase on intestinal microbiota, as well as the relationship between cellulase activity and gut microbiota modulation. Although the cellulase preparation used here is crude, the preparation is actually used for the improvement of food digestion and food production. Therefore, the finding of the prebiotic-like effect of CEL is of great significance in terms of application.

5. Conclusions

Our results indicate that CEL treatment increased the RA of typical probiotics, such as Bifidobacterium and Lactobacillus. CEL also modulated the RA of other genera, including Collinsella, Enterococcus, Oscillospira, Dorea and Coprobacillus, as reported for typical prebiotic oligosaccharides. These findings suggest a potential role for Aspergillus cellulase as a prebiotic digestive enzyme in the food and animal feed industries, in addition to the established benefits to food digestion. This study may also help to elucidate the health benefits of Aspergillus-fermented foods and dietary enzyme supplements containing Aspergillus cellulase. Interestingly, the modulations of the genera Bifidobacterium, Collinsella, Enterococcus, Oscillospira, Dorea and Coprobacillus are similar to those reported for Aspergillus protease and lipase preparations [6]. Thus, the colonic digestion of carbohydrates, proteins and lipids may have a similar impact on these genera. Currently, our group is conducting metabolomics studies to elucidate the mechanisms through which Aspergillus cellulase modulates microbiota, as well as the effects of Aspergillus cellulase on gut health and diseases.

Author Contributions

Conceptualization, investigation, methodology, validation, writing—original draft: Y.Y., T.K. and N.K.; formal analysis, software, methodology, visualization: Y.Y., T.K., S.F., M.K. and S.Y.; literature search: Y.Y. and N.K.; project administration, funding acquisition, supervision, writing—review and editing: N.K., T.K., S.F., M.K. and S.Y. All authors have read and agreed to the published version of the manuscript.

Funding

This study was supported, in part, by the grant from the HIRAKU consortium, Hiroshima University (to T.K.). Amano Enzyme Inc. (to N.K.), JSPS KAKENHI (18H04805 to S.F.), AMED-CREST (JP21gm1010009 to S.F.), JST ERATO (JPMJER1902 to S.F.), the Takeda Science Foundation (to S.F.) and the Food Science Institute Foundation (to S.F.).

Institutional Review Board and Statement

The study was conducted according to the guidelines of the Declaration of Helsinki and approved by the Ethics Committee of Hiroshima University (ethical approval No. C15-12), approved on 16 June 2015.

Informed Consent Statement

Not applicable.

Data Availability Statement

The data of the 16S rRNA gene sequences of gut microbiota presented in this study are available from the DDBJ database (http://getentry.ddbj.nig.ac.jp/) (accessed on 8 October 2021) under accession number DRA012837. Further inquiries can be directed to the corresponding authors.

Conflicts of Interest

This study received funding from Amano Enzyme Inc. The funders had no role in the design of the study; in the collection, analyses, or interpretation of data; in the writing of the manuscript, or in the decision to publish the results. All authors declare no other competing interests in the current study.

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Figure 1. Effects of supplemental CEL on cecal microbiome profiles and alpha diversity. PCoA of unweighted (A) and weighted UniFrac (B) and PERMANOVA analyses were performed to compare the gut microbiome profiles of the experimental groups. The diversity of the gut microbiota within samples was measured by (C) Shannon index and (D) PD whole tree. Data are presented as a boxplot with median and min–max whiskers. The dots (•) in the boxplots are outliers. * Significantly different at p < 0.05 (Welch’s t-test).
Figure 1. Effects of supplemental CEL on cecal microbiome profiles and alpha diversity. PCoA of unweighted (A) and weighted UniFrac (B) and PERMANOVA analyses were performed to compare the gut microbiome profiles of the experimental groups. The diversity of the gut microbiota within samples was measured by (C) Shannon index and (D) PD whole tree. Data are presented as a boxplot with median and min–max whiskers. The dots (•) in the boxplots are outliers. * Significantly different at p < 0.05 (Welch’s t-test).
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Figure 2. Different taxa between the Ctrl and CEL groups. LEfSe analysis was performed to compare the different taxa between the Ctrl and CEL groups. The two-tailed nonparametric Kruskal–Wallis test was used to evaluate the significance of differences between taxa at p < 0.05.
Figure 2. Different taxa between the Ctrl and CEL groups. LEfSe analysis was performed to compare the different taxa between the Ctrl and CEL groups. The two-tailed nonparametric Kruskal–Wallis test was used to evaluate the significance of differences between taxa at p < 0.05.
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Figure 3. Effects of supplemental CEL on cecal microbiota composition at the phylum (A) and family (B) levels.
Figure 3. Effects of supplemental CEL on cecal microbiota composition at the phylum (A) and family (B) levels.
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Figure 4. Correlation matrix (correlation coefficient) between the levels of organic acids and the relative abundances of genera. * p < 0.05, ** p < 0.01.
Figure 4. Correlation matrix (correlation coefficient) between the levels of organic acids and the relative abundances of genera. * p < 0.05, ** p < 0.01.
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Table 1. Effects of supplemental CEL on the relative abundance of genera in cecum of rats.
Table 1. Effects of supplemental CEL on the relative abundance of genera in cecum of rats.
PhylumFamilyGenusCtrlCEL
(% of total bacteria)
FirmicuteLactobacillaceaeLactobacillus0.698 ± 0.1083.186 ± 0.833 *
ActinobacteriaCoriobacteriaceaeCollinsella0.005 ± 0.0032.578 ± 0.601 **
ActinobacteriaBifidobacteriaceaeBifidobacterium0.034 ± 0.0100.965 ± 0.198 **
FirmicuteEnterococaceaeEnterococcus0.02 ± 0.010.83 ± 0.15 **
FirmicuteRuminococacceaeRuminococcus3.13 ± 1.380.01 ± 0.00
FirmicuteErysipelotrichaceaeAllobaculum3.03 ± 0.680.38 ± 0.20 **
FirmicuteLachnospiraceaeRoseburia2.60 ± 1.340.00 ± 0.00
FirmicuteRuminococaceaeOscillospira2.32 ± 0.310.18 ± 0.08 **
BacteroidetesPorphyromonadaceaeParabacteroides2.19 ± 0.160.15 ± 0.01 **
ActinobacteriaPeptococcaceaerc4-41.27 ± 0.160.00 ± 0.00 **
FirmicuteLachnospiraceaeDorea1.12 ± 0.170.00 ± 0.00 **
FirmicuteErysipelotrichaceaeCoprobacillus0.35 ± 0.060.00 ± 0.00 **
ActinobacteriaEggerthellaceaeAdlercreutzia0.21 ± 0.000.00 ± 0.00 **
Mean ± SE (n = 8). * p < 0.05, ** p < 0.01 (Welch’s t-test).
Table 2. Effects of supplemental CEL on the levels of organic acids in cecum of rats.
Table 2. Effects of supplemental CEL on the levels of organic acids in cecum of rats.
Organic AcidsCtrlCEL
(μmol/g dry wt of cecal contents)
Acetate40.3 ± 5.910.8 ± 4.0 *
Propionate11.1 ± 0.01.1 ± 0.2 *
n-Butyrate7.8 ± 0.91.5 ± 1.2 *
Lactate0.9 ± 0.1188.7 ± 13.1 *
Succinate13.9 ± 3.112.5 ± 3.3
Total organic acids75.2 ± 8.8213.9 ± 10.0 *
Mean ± SE (n = 8). * p < 0.05 (Welch’s t-test).
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Yang, Y.; Kumrungsee, T.; Kato, N.; Fukuda, S.; Kuroda, M.; Yamaguchi, S. Aspergillus-Derived Cellulase Preparation Exhibits Prebiotic-like Effects on Gut Microbiota in Rats. Fermentation 2022, 8, 71. https://doi.org/10.3390/fermentation8020071

AMA Style

Yang Y, Kumrungsee T, Kato N, Fukuda S, Kuroda M, Yamaguchi S. Aspergillus-Derived Cellulase Preparation Exhibits Prebiotic-like Effects on Gut Microbiota in Rats. Fermentation. 2022; 8(2):71. https://doi.org/10.3390/fermentation8020071

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Yang, Yongshou, Thanutchaporn Kumrungsee, Norihisa Kato, Shinji Fukuda, Manabu Kuroda, and Shotaro Yamaguchi. 2022. "Aspergillus-Derived Cellulase Preparation Exhibits Prebiotic-like Effects on Gut Microbiota in Rats" Fermentation 8, no. 2: 71. https://doi.org/10.3390/fermentation8020071

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