Next Article in Journal
Beer–The Importance of Colloidal Stability (Non-Biological Haze)
Previous Article in Journal
A Review on the Source of Lipids and Their Interactions during Beer Fermentation that Affect Beer Quality
Previous Article in Special Issue
Cell Wall and Whole Cell Proteomes Define Flocculation and Fermentation Behavior of Yeast
Font Type:
Arial Georgia Verdana
Font Size:
Aa Aa Aa
Line Spacing:
Column Width:

Fermented Foods and Beverages in Human Diet and Their Influence on Gut Microbiota and Health

Nelson Mota de Carvalho
Eduardo M. Costa
Sara Silva
Lígia Pimentel
Tito H. Fernandes
4 and
Manuela Estevez Pintado
Universidade Católica Portuguesa, CBQF-Centro de Biotecnologia e Química Fina–Laboratório Associado, Escola Superior de Biotecnologia, Rua Arquiteto Lobão Vital, 172, 4200-374 Porto, Portugal
CINTESIS—Centro de Investigação em Tecnologias e Serviços de Saúde, Faculdade de Medicina, Universidade do Porto, Rua Doutor Plácido da Costa, 4200-450 Porto, Portugal
QOPNA—Unidade de Investigação de Química Orgânica, Produtos Naturais e Agroalimentares, Universidade de Aveiro, Campus Universitário de Santiago, 3810-193 Aveiro, Portugal
Faculdade de Medicina Veterinária, Universidade de Lisboa, 1300-477 Lisboa, Portugal
Author to whom correspondence should be addressed.
Fermentation 2018, 4(4), 90;
Submission received: 30 September 2018 / Revised: 25 October 2018 / Accepted: 26 October 2018 / Published: 28 October 2018
(This article belongs to the Special Issue Microbial Foods—The Science of Fermented Foods)


Dietary changes have accompanied the evolution of humanity and is proven to be fundamental in human evolution and well-being. Nutrition is essential for survival and as a matter of health and equilibrium of the human body. About 1/3 of the human diet is composed by fermented foods and beverages, which are widely distributed and consumed in different societies around the world, no matter the culture and lifestyle. Fermented foods are derived from the fermentation process of different substrates by microorganisms, and more importantly to humans, by those with beneficial characteristics, due to the positive impact on health. Food is transformed in the gut, gaining new proprieties, and increasing its value to the organism. The effects of fermented foods and beverages can be assessed by its influence at the gut microbiota level. Recent studies show the major importance of the gut microbiota role in modulating the organism homeostasis and homeorhesis. More crosslinks between health, gut microbiota and diet are being established especially in the gut–brain axis field. Therefore, the benefits of diet, in particularly of fermented foods and beverages, should be studied and pursued in order to promote a good health status.

1. Introduction

History of man has many branches, but all of them take in consideration progress, alongside with evolution, equilibrium, and the well-being of the human kind. The evolution of nutrition is one of the ways that has shown how diet can impact on health.
Around the world, each culture has its own distinctiveness in terms of food culture and heritage, where fermented foods are included. Naturally fermented foods and beverages contain both functional and non-functional microorganisms, and from these, 90% are still made with traditional techniques/methods [1].
The consumption of fermented foods can bring many advantages to the human organism, nevertheless some disadvantages are known from the consumption of specific fermented foods [1,2]. There is a lack of references for some fermented foods, probably because they do not have a history of use in a particular country or they are made at home instead of being commercialised. However, this lack of information should not be interpreted as absence of beneficial effects [2]. The importance of fermented foods has gained considerable attention since 1907, when Nobel Prize laureate Elie Metchnikoff, assessed the beneficial effects of fermented milks on the longevity of Bulgarian populations and introduced the concept of probiotics [3,4].
Although clinical trials in humans are still scarce, the most recent studies have opened paths which link nutrition, fermented foods and probiotics, to the role and modulation of the gut microbiota, the maintenance of vital functions in the organisms and to the state of well-being, from immunity to mental health. Studies have linked a healthy gut microbiota and traditional dietary patterns, where fermented foods and beverages are included, to lower risks of anxiety or depression, thus showing the connection to mental health [5,6].
This review introduces these themes, by establishing connections between the consumption of fermented foods and beverages and their beneficial role to human health, mainly on the gut-brain axis.

2. Nutrition and Human Evolution

Since the existence of mankind, foodstuffs and nutrition has played a large role in its evolution. Since 1770, Antoine Lavoisier, the “Father of Nutrition and Chemistry”, discovered the actual process by which food is metabolized. However, nutrition as an independent science from human medicine only occurs on the middle of the 20th century. Food, in its most varied forms, is fundamental to humans. Through food of quality, humans obtain nutrients, micronutrients and energy, which covers their requirements and promotes and secures growth, movement, work, thought and most important of them all, their health and well-being.
Such steps lead to the improvement of the human condition, and to the development of physical and psychological traits, that accompanied the evolution of man. Studies of human ancient civilization show that harvesting food from cultivated land, and its processing, helped them to overcome hunger and disease, allowing at same time increase in population. However, these same practices led to a surprising relative reduction in the diversity of nutritional intake [7,8].
In the past, changes in food availability and in diet composition, for humans, created selective pressures on multiple biological processes such as metabolism, brain activity, digestive system, feeding habits and even in appetite. Metabolic pathways, through enzymatic and hormonal control, have an important role in all type of dietary regimes, and when people focus on a particular diet some pathways and reactions become critical [8]. Different cultures, overtime, embrace different heritages by mixing several flavours such as salty, spicy, sour, sweet and bitter in foods, and has become a portal into culture itself.

3. Fermented Foods on Society

Fermented foods and beverages are made through controlled microbial growth and enzymatic conversions of major and minor food components [9].
Food fermentation is characterized by the primary metabolites, microorganisms and substrates involved in the fermentation processes [2,9,10]. This type of foods is the hub of microorganism’s consortia. These can be present either as natural indigenous microbiota in the substrates, or as added started cultures, containing functional activity that change biochemically and organoleptically the substrates into a different product during the fermentation. This provides an enrichment of the nutritional value in these products, unique flavours, textures and health-benefits to the consumers [2,11].
Some of these fermentative bacteria containing functional activity have been referred as probiotics when they fulfil the definition establish by the Food and Agriculture Organization of the United Nations (FAO) and by the World Health Organization (WHO): “live microorganisms which, when administered in adequate amounts, confer a health benefit on the host” [1,2,12]. Probiotics used in foods must have the capacity to survive and resist the gastric juices and bile, also being able to proliferate and to colonise the digestive tract [13]. The oral consumption of ingested strains from fermented foods and probiotics are between 108 and 1012 CFU per day [4,14]. However, the application of probiotics is controversial since the European Food Safety Authority (EFSA) rejected all submitted health claims related to the term “probiotic” while in Japan, the Ministry of Health, Labour, and Welfare approves foods or ingredients that have enough scientific evidence for health claim substantiation and use a Foods for Specific Health Use (FOSHU) label to identifying them. In the case of Food and Drug Administration (FDA), it has allowed nutritional supplements of Saccharomyces boulardii to be sold with the following information in the label: (1) maintains the balance of the intestinal flora; (2) keeps intestines functioning well; and (3) promotes intestinal health [15,16,17].
The most commonly used and applied microorganisms to produce fermented foods and beverages from plant and animal origin are lactic acid bacteria (LAB) [11,14]. Additionally, the most commonly used probiotics are LAB belonging to the genus Lactobacillus and Enterococcus along with bacteria of the genus Bifidobacterium [1,14]. Recently, yeasts and other microbes (e.g., Bacillus) have been developed as potential probiotics [1].
The matrix of some fermented foods supports the delivery of high numbers of microorganisms to the gastrointestinal tract having a beneficial impact on the human gut microbiota [9]. One example of fermented foods as good matrices to delivering probiotics to the host are table olives, an important food commodity of the Mediterranean diet and one of the most important agricultural products that are consume fermented, which at same time do not contain lactose and cholesterol. Table olives are generally fermented by natural indigenous LAB and/or by some yeasts present in the olives [18,19].
Fermented foods and beverages are estimated to make up 1/3 of human diet, and have been a part of diets for approximately 10,000 years ago, dating back to the same period of agriculture and animal husbandry introduction [4,6,14]. Food fermentation was used, in ancient times, as a technique to prevent food spoilage.
In the early days of the use of fermentation, people were not aware of the existence of microorganisms or their role in the fermentation process; therefore, they applied artisanal methods to make fermented foods and beverages. It was only in the middle of the 19th century that a development in the concept of fermentative processes and knowledge about food fermentation happened, thanks to the emergence of microbiology as a science and to the industrial revolution. The advances in microbiology have made possible to understand the basic biological concepts behind food fermentation [10]. These advances resulted in an increase of variety of microorganisms and their combinations (e.g., bacteria and yeast) which created thousands of different types of fermented foods and beverages consumed worldwide [9].
Nowadays, different fermented foods and beverages (~3500) are being processed and consumed by billions of people in the world [10,11]. The different fermented foods and beverages are classified within 9 major groups based on substrates used from animal/plant sources: (1) fermented cereals, (2) fermented vegetables and bamboo shoots, (3) fermented legumes, (4) fermented roots/tubers, (5) fermented milk products, (6) fermented and preserved meat products, (7) fermented, dried and smoked fish products, (8) miscellaneous fermented products, and (9) alcoholic beverages [11].
The present review will not focus on the effect of individual groups of fermented foods but instead will focus on the general effect of fermented foods on the gut microbiota.
The main focus, at the moment, is to prove their functionality, meaning they still have to demonstrate improvements in target functions in the human body leading to health and well-being. Nevertheless, numerous food market options, from milks and yogurts to fermented soy products, cereals, vegetables and juices are already available [20]. Human studies will have to be carried out to validate the potential benefits already shown in in vitro and rats/mice studies up to now.

4. Health Benefits of Fermented Foods and Beverages

The reference to fermented foods as being health-promoting is common, and health benefits are often perceived by folk beliefs, nonetheless scientific foundations of such claims are not that solid and perspectives for product innovations and impact studies have yet to be made in especially more controlled in vivo studies [20]. However, studies have shown until now that the two main effects of the daily consumption of fermented foods are upon the immune system and metabolic function. It has been suggested that these foods can reduce incidence and duration of respiratory infections, bring improvements to bone, liver, body mass, and blood pressure indices, to the prevention of diarrhoea and constipation, and even skin health [2,21,22,23,24,25,26,27,28,29]. Some studies have shown safety and effectiveness from the use of probiotic foods to aid recovery from organ transplant and abdominal surgery, to provide benefits on the managing of some cardiovascular risk factors and the possibility to reduce the load of pathogens by the intake of LAB [2,9]. Fermented foods and beverages have also been shown to possess the potential to influence brain health, stress relief, memory enhancement, and to have beneficial immune and neuroprotective effects [1,5,6,9]. Still, further studies are required in these prominent fields.
It has been argued that the fermented foods and beverages may influence positively the mental health of humans, alleviate inflammation, control oxidative stress that can lead to cognitive dysfunction and neurodegenerative diseases (e.g., Alzheimer’s disease), and even lower the risk of anxiety or depression [5,6]. Preventive effects of the administration of fermented food, as red mould rice, which is common on Asian foods, were found on neurodegenerative diseases as Parkinson’s and on behavioural dysfunctions [5,30].
Other studies have tried to explain the influence of diet in mood, by the establishing a link to the production of neurotransmitters and validating the role of the non-essential dietary components in the antioxidant defence system, as well as to the ability to provide anti-inflammatory support [6]. As an example, supplementation with Bifidobacterium, bacteria genera that can be found on several fermented foods and beverages, may attenuate exaggerated stress responses and maintain adequate levels of neuropeptide brain-derived neurotrophic factor, which are known to be low in depression. This supplementation is also expected to provide systemic protection against lipid peroxidation and decrease brain monoamine oxidase activity, that will potentially increase intersynaptic neurotransmitter levels [31,32]. Another case is the one of Lactobacillus plantarum, present in traditional Chinese fermented food, which showed strong antioxidant activity in animals [33].
In traditional diets, the fermentation of fibre-rich components has shown the capacity of producing beneficial immune, glycemic, and anti-inflammatory activity [6,34,35,36,37].
Findings have linked fermented foods and beverages to positive influences on the gut microbiota with long-term impact gut-brain communication. Moreover, the most recent advances in gut microbiota studies have been able to establish the concept of the gut-brain axis, showing the modulatory effect of the gut microbiota composition on the brain and the central nervous system in interaction. Therefore, a link can be established between diet, as an influencer on the gut microbiota composition and consequently on the brain and furthermore on the homeostasis of the organism [5,38,39,40].
Although it is possible to find many studies showing the beneficial effects of different fermented foods, most of them are tested in in vitro or in rats/mice models. There are still few studies involving the impact of fermented foods on humans. More studies are needed to be conducted in humans to prove the results verified in the other studied models. Examples of fermented food and beverage impact studies on humans can be seen in Table 1.

5. Fermentation Benefits and Risks

Fermented foods and beverages are products that went through a fermentation process which is an economical process that helps to prevent food spoilage by microorganisms. This process not only retains shelf-life time, but it also promotes the safe consumption of products [2]. Fermentation, in most cases, leads to detoxification and destruction of undesirable substances that are common in raw foods, like toxic components and anti-nutritive factors (e.g., phytates, tannins, and polyphenols) [2,10]. In addition, most of the times, the fermentation process enhances the bio-availability of nutrients and enriches the sensory quality of food [1,10]. Fermentation, in this way, becomes a food safety practice.
Despite the existence of positive effects related to fermented foods and beverages, there are also negative effects related to the consumption of specific fermented foods. Adverse effects associated with fermented foods and probiotics consumption may be under-reported [46]. Pathogen contaminant microorganisms present in fermented foods are a biological risk for human health. An example can be Escherichia coli or Clostridium botulinum, which can cause poisoning in fermented foods and turning them hazardous in fermented milk and meat products [47,48,49]. Another shared concern are the viruses present in fermented foods, which can affect and influence the human gut microbiota, but their impact and prevalence is still limitedly studied [50].
The presence of biogenic amines is one of the most important health risks associated with fermented foods consumption [1]. Biogenic amines are low molecular weight organic molecules, formed by microbial decarboxylation of their precursor amino acids or by transamination of aldehydes and ketones by amino acid transaminases [1,51,52]. These organic compounds are present in some fermented foods (e.g., sauerkraut, fish products, cheese) [1,51,53,54].
Nevertheless, the consumption of food with low levels of biogenic amines is not considered a serious health risk since, under normal physiological conditions, biogenic amines are degraded in the gut lumen by monoamine oxidase and diamine oxidase enzymes. However, the intake of high levels of biogenic amines (>100 mg/kg) from diet, or pathological alterations of the detoxification system, can induce several human health disorders [1,52,53,54].

6. The Role of Gut Microbiota

The gut microbiota is the microbial population living in the gut, especially in the colon. This microbial population is diverse and abundant (1014 cells) and consists of bacteria, archaea, and eukaryotes that live in an intimate relationship with the host [5,14].
At the bacterial level, the main phyla found in the human gut are Firmicutes and Bacteroidetes, and in a smaller representation the Proteobacteria and Actinobacteria. These phyla, together, constitute 93.5–98% of gut microbiota. Some of the most common bacteria genera found in gut are Bifidobacterium, Lactobacillus, Bacteroides, Clostridium, Escherichia, Streptococcus and Ruminococcus [55,56,57,58]. These bacteria are important for the well-being of their host, as in the case of disease, or in the maintenance of the immunological activity, energy consumption and even the brain activity (e.g., stress response), having an impact on host health [5,14,55,59,60].
Diet has an important role in shaping the composition and the activity of the complex microbial population in the gut, providing macronutrients such as carbohydrates, proteins, and fats [14,55]. Diet is not the only factor that can affect gut microbiota, but it is one of the most important which can provoke dysbiosis, i.e., any compositional change of the resident commensal bacteria in the gut, compared to the one found in healthy individuals.
Obesity and type II diabetes are disease states associated with gut microbiota composition and compositional changes [3,61,62]. In addition, studies show that dysbiosis is associated with anxiety and depression while the administration of probiotics produces anxiolytic- and antidepressant-like activity in animal studies [5,40,63,64]. Diet has influence over the composition and function of the human gut microbiota, crucial for the extraction of energy from food and even the maintenance of the immune system. Furthermore, diets rich in probiotics (prepared either naturally or with industrial processes) showed positive results on stress relief and memory enhancement, possibly by via gut microbiota improvement. Other studies indicate that fermented dairy products may also have neuroprotective effects [5,65].
Our diet has effect on the composition and activity of gut microbiota, therefore, in short-chain fatty acids (SCFA) production [66,67,68]. The production of SCFA (e.g., acetate, propionate, and butyrate) is one of the functions of the gut microbiota and several bacteria may also produce them during fermentation of food matrices. The fermentation and SCFA production, in the colon or in the food, inhibit the growth of pathogens by reducing the local pH. The SCFA are produced in the gut through colonic fermentation, in a complex process involving the interactions of many microbial species in anaerobic conditions leading to a breakdown or conversion of dietary fibre, protein, and peptides into different end products [68,69,70,71]. The most abundant SCFA in the colon are acetate, propionate and butyrate and are normally present in molar ratio ranging from 3:1:1 to 10:2:1 [68,70,71,72]. Their production in the gut promote directly the growth of symbionts, which decrease the peptide degradation and the production of toxic compounds (e.g., ammonia, amines) [71,73,74].
SCFA are important to the normal function of the gut and the human body [75]. SCFA regulate the metabolism of glucose and lipids, promote mineral absorption, stimulate proliferation and differentiation of intestinal enterocytes, reduce the prevalence of inflammatory diseases and antioxidative functions. Additionally, it was found that SCFA positively influence the host metabolism and have a crucial role in the functions of the central nervous system [5,40,60,76].
The overall lack of quantitative data on actual fluxes of SCFA and metabolic processes regulated by SCFA and, thus, the influence of the gut microbiota is a key research subject.

7. Gut Microbiota, Fermented Foods, and Beverages

Several studies have been conducted to assess the role, importance and impact of the gut microbiota [58,59,77,78,79,80,81]. Some models can be established in different ways, providing a wide range of data on the researched topics.
The analysis of the impact of different foods on the gut microbiota can be done in model studies in vivo (e.g., human studies) or in vitro. The utilization of in vitro gut microbiota simulation models, used to reduce the use of in vivo models, are more useful to setup and explore different conditions and compositions for the study, thus enabling the simulation of different gut conditions [82,83]. Simulation models can help to understand the complex relationship between host-gut microbiota-food component. The in vitro fermentation models are used nowadays as essential tools to screen substances, from dietary ingredients to pathogens and to assess how they alter or are altered by gastrointestinal environments and microbial populations. These models allow to cultivate complex gut bacteria, in controlled conditions adjusted according to the aim of each study, to study their metabolism. Although the advantages of the use of in vitro models, the utilization of the in vivo models are still important and crucial to be done and to analyse the “real” effect of food ingredients in human health. In vitro models are models that attempt to mimic closely in vivo conditions and even simulate physicochemical and physiological events on the digestive tract, allowing the studies of structural changes, bioavailability, and digestibility of foods when they arrive on the gut microbiota. However, these models cannot correspond totally to what happens in the interior of the human gastrointestinal system [84,85]. For that reason, human studies are still required and necessary to make a claim about the effect of a food ingredient on human health.
Experimental works, mainly on mice, have been developed to explore the contribution of the microbiota in modulating the gut-brain axis, recurring to the use of germ-free animals, probiotics, antibiotics, and infection studies [38,39,86]. Studies with rats and mice suggest that gut microbiota interact with the brain. In animals, changes in the gut microbiota can modulate peripheral and central nervous systems, resulting in altered brain functions, and as these systems interact with the immune system thus having changes at this level. Still, this influence on the central nervous systems and on behaviour has very little evidence on humans, correlating the microbiota to the brain. Further studies with probiotics, fermented foods and beverages and their effect on the gut microbiota, especially in humans can open path to new diet therapies [3,40,86].
Diet has a very large impact on gut microbiota, and the composition of such diet is known to modulate gut microbiota, with a wide range of effects on the organism, affecting intestinal permeability, mucosal immune function, intestinal motility and sensitivity and also the activity in the enteric nervous system (Figure 1) [38,39,86,87].
Despite the lack of evidence in humans, preclinical findings identify a key role of gut microbiota on modulating the brain and the gut-brain axis (a bidirectional communication network between the central and the enteric nervous system, which links the emotional and cognitive centres of the brain with peripheral intestinal functions) [38,39,87]. In animals, the absence of a normal gut microbiota has shown significant effects on adult stress responsiveness and such alterations were partially reversed with gut colonization [38].
There are well documented effects of how adverse early life influences on the gut-brain axis, and in animal models, prenatal and postnatal stress can alter the composition and total biomass of the enteric microbiota. The brain and behavioural effects of perinatal stress in rodent models offer a high translational validity for human diseases, including gastrointestinal and psychiatric disorders [38,86]. The microbiota influences interactions between the gut and the brain. Microbiota interacts with the central nervous system by regulating brain chemistry and influencing neuro-endocrine systems associated with stress response. Influences in the central nervous system can affect the microbiota indirectly by altering its environment and directly by signalling molecules [38,39]. The use of fermented foods and beverages, mainly with probiotic bacteria can restore a perturbation of the normal luminal habitat and so change the effects of the central nervous system on the microbiota [5,39,86].
The knowledge of the mechanisms behind the impact of fermented foods and beverages on the gut-brain axis are still relatively scarce, regardless authors have hypothesised that changes in composition and activity of the gut microbiota lead to brain and cognitive health [5,6].
Positive mental health has been linked to the consumption of fermented foods. Controlled fermentation, by amplifying nutrient and phytochemical contents on foods, takes impact on mental health. Changes in the gut microbiota can influence mood and fatigue taking therapeutic value. Agmatine and polyamines in fermented foods and beverages have been related, experimentally, to several benefits related to brain health [6]. Furthermore, evidences show neuroprotective effects of fermented foods, by preventing neurotoxicity [5]. These ideas lead to the convergence of microbe-nutrition and gut-brain axis researches [5,6,38,39]. The main mechanisms involved show that diet impacts the gut microbiota and the gut microbiota is linked to brain health. From the gut microbiota to brain, processes include production, expression and turnover of neurotransmitters (e.g., serotonin) and neurotrophic factor, the protection of the intestinal barrier, the mucosal immune regulation and the production of bacterial metabolites. From the brain to the gut microbiota, impact is show by the alteration in mucus and biofilm production, in motility, in the intestinal permeability and on the immune function. Within these perspectives, fermented foods and beverages, by its direct impact and modulation of the gut microbiota and its function, may take action on positive brain and cognitive health [39].
Probiotics have also shown potential health effects on gut microbiota in relation to brain functions and cognitive health promotion. Fermentation modulates chemical constituents improving bioavailability of the food and the incorporation of microbes in natural foods seems to enhance their neuroprotective effects. Probiotics in fermented foods may influence brain function through the gut microbiota. Recent studies show that neurotransmitters are affected by the gut microbiota and so fermented foods can influence cognitive function. Changes in the chemical composition of foods induced by fermentation related to probiotics and homeostasis in the gut microbiota may explain the beneficial effects of fermented foods in human health [5].

8. Conclusions

Fermented food consumed in our diet modulates gut microbiota and the functions of the gut microbiota influence a great number of systems in the human organism. Notably the gut-brain axis, as the bidirectional influence of both (gut and brain), the deriving consequences and most importantly, the benefits of its good maintenance is now acknowledged. A correlation between diet, gut microbiota and health is established as more findings are supporting the established connexions and the modulatory effects in each other. However, more human clinical studies are necessary to corroborate and verify the health benefits and the new possible interactions between the organism’s systems, therefore clarifying the links between diet, probiotics, fermented foods and human well-being.

Author Contributions

N.M.d.C. reviewed the literature and drafted the manuscript. E.M.C., S.S., L.P., T.H.F., and M.E.P. read and revised the manuscript. All authors read and approved the final manuscript.


This work was supported by Fundação para a Ciência e a Tecnologia (FCT) through the UID/Multi/50016/2013 project and through Project MultiBiorefinery-Multi-purpose strategies for broadband agro-forest and fisheries by-products valorization: a step forward for a truly integrated biorefinery (POCI-01-0145-FEDER-016403). Financial support for authors Eduardo M. Costa and Lígia Pimentel was provided by the individual fellowships SFRH/BDE/103957/2014 and SFRH/BPD/119785/2016, respectively.

Conflicts of Interest

The authors declare no conflict of interest.


  1. Tamang, J.P.; Shin, D.-H.; Jung, S.-J.; Chae, S.-W. Functional properties of microorganisms in fermented foods. Front. Microbiol. 2016, 7, 578. [Google Scholar] [CrossRef] [PubMed]
  2. Chilton, S.N.; Burton, J.P.; Reid, G. Inclusion of fermented foods in food guides around the world. Nutrients 2015, 7, 390–404. [Google Scholar] [CrossRef] [PubMed]
  3. Hemarajata, P.; Versalovic, J. Effects of probiotics on gut microbiota: Mechanisms of intestinal immunomodulation and neuromodulation. Ther. Adv. Gastroenterol. 2013, 6, 39–51. [Google Scholar] [CrossRef] [PubMed]
  4. Veiga, P.; Pons, N.; Agrawal, A.; Oozeer, R.; Guyonnet, D.; Brazeilles, R.; Faurie, J.-M.; van Hylckama Vlieg, J.E.; Houghton, L.A.; Whorwell, P.J. Changes of the human gut microbiome induced by a fermented milk product. Sci. Rep. 2014, 4, 6328. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  5. Kim, B.; Hong, V.M.; Yang, J.; Hyun, H.; Im, J.J.; Hwang, J.; Yoon, S.; Kim, J.E. A review of fermented foods with beneficial effects on brain and cognitive function. Prev. Nutr. Food Sci. 2016, 21, 297–309. [Google Scholar] [CrossRef]
  6. Selhub, E.M.; Logan, A.C.; Bested, A.C. Fermented foods, microbiota, and mental health: Ancient practice meets nutritional psychiatry. J. Physiol. Anthropol. 2014, 33, 2. [Google Scholar] [CrossRef] [PubMed]
  7. Floros, J.D.; Newsome, R.; Fisher, W.; Barbosa-Cánovas, G.V.; Chen, H.; Dunne, C.P.; German, J.B.; Hall, R.L.; Heldman, D.R.; Karwe, M.V. Feeding the world today and tomorrow: The importance of food science and technology: An IFT scientific review. Compr. Rev. Food Sci. Food Saf. 2010, 9, 572–599. [Google Scholar] [CrossRef]
  8. Luca, F.; Perry, G.; di Rienzo, A. Evolutionary adaptations to dietary changes. Annu. Rev. Nutr. 2010, 30, 291–314. [Google Scholar] [CrossRef] [PubMed]
  9. Marco, M.L.; Heeney, D.; Binda, S.; Cifelli, C.J.; Cotter, P.D.; Foligné, B.; Gänzle, M.; Kort, R.; Pasin, G.; Pihlanto, A. Health benefits of fermented foods: Microbiota and beyond. Curr. Opin. Biotechnol. 2017, 44, 94–102. [Google Scholar] [CrossRef] [PubMed]
  10. Kabak, B.; Dobson, A.D. An introduction to the traditional fermented foods and beverages of Turkey. Crit. Rev. Food Sci. Nutr. 2011, 51, 248–260. [Google Scholar] [CrossRef] [PubMed]
  11. Tamang, J.P.; Watanabe, K.; Holzapfel, W.H. Diversity of microorganisms in global fermented foods and beverages. Front. Microbiol. 2016, 7, 377. [Google Scholar] [CrossRef] [PubMed]
  12. Hill, C.; Guarner, F.; Reid, G.; Gibson, G.R.; Merenstein, D.J.; Pot, B.; Morelli, L.; Canani, R.B.; Flint, H.J.; Salminen, S. Expert consensus document: The International Scientific Association for Probiotics and Prebiotics consensus statement on the scope and appropriate use of the term probiotic. Nat. Rev. Gastroenterol. Hepatol. 2014, 11, 506–514. [Google Scholar] [CrossRef] [PubMed]
  13. Saad, N.; Delattre, C.; Urdaci, M.; Schmitter, J.-M.; Bressollier, P. An overview of the last advances in probiotic and prebiotic field. LWT Food Sci. Technol. 2013, 50, 1–16. [Google Scholar] [CrossRef]
  14. Derrien, M.; van Hylckama Vlieg, J.E. Fate, activity, and impact of ingested bacteria within the human gut microbiota. Trends Microbiol. 2015, 23, 354–366. [Google Scholar] [CrossRef] [PubMed]
  15. Venugopalan, V.; Shriner, K.A.; Wong-Beringer, A. Regulatory oversight and safety of probiotic use. Emerg. Infect. Dis. 2010, 16, 1661–1665. [Google Scholar] [CrossRef] [PubMed]
  16. Foligne, B.; Daniel, C.; Pot, B. Probiotics from research to market: The possibilities, risks and challenges. Curr. Opin. Microbiol. 2013, 16, 284–292. [Google Scholar] [CrossRef] [PubMed]
  17. Kumar, H.; Salminen, S.; Verhagen, H.; Rowland, I.; Heimbach, J.; Bañares, S.; Young, T.; Nomoto, K.; Lalonde, M. Novel probiotics and prebiotics: Road to the market. Curr. Opin. Biotechnol. 2015, 32, 99–103. [Google Scholar] [CrossRef] [PubMed]
  18. Bonatsou, S.; Tassou, C.C.; Panagou, E.Z.; Nychas, G.-J.E. Table olive fermentation using starter cultures with multifunctional potential. Microorganisms 2017, 5, 30. [Google Scholar] [CrossRef] [PubMed]
  19. Blana, V.A.; Grounta, A.; Tassou, C.C.; Nychas, G.-J.E.; Panagou, E.Z. Inoculated fermentation of green olives with potential probiotic Lactobacillus pentosus and Lactobacillus plantarum starter cultures isolated from industrially fermented olives. Food Microbiol. 2014, 38, 208–218. [Google Scholar] [CrossRef] [PubMed]
  20. Leroy, F.; de Vuyst, L. Fermented food in the context of a healthy diet: How to produce novel functional foods? Curr. Opin. Clin. Nutr. Metab. Care 2014, 17, 574–581. [Google Scholar] [CrossRef] [PubMed]
  21. Guillemard, E.; Tondu, F.; Lacoin, F.; Schrezenmeir, J. Consumption of a fermented dairy product containing the probiotic Lactobacillus casei DN-114 001 reduces the duration of respiratory infections in the elderly in a randomised controlled trial. Br. J. Nutr. 2010, 103, 58–68. [Google Scholar] [CrossRef] [PubMed]
  22. Makino, S.; Ikegami, S.; Kume, A.; Horiuchi, H.; Sasaki, H.; Orii, N. Reducing the risk of infection in the elderly by dietary intake of yoghurt fermented with Lactobacillus delbrueckii ssp. bulgaricus OLL1073R-1. Br. J. Nutr. 2010, 104, 998–1006. [Google Scholar] [CrossRef] [PubMed]
  23. De Vrese, M.; Winkler, P.; Rautenberg, P.; Harder, T.; Noah, C.; Laue, C.; Ott, S.; Hampe, J.; Schreiber, S.; Heller, K. Probiotic bacteria reduced duration and severity but not the incidence of common cold episodes in a double blind, randomized, controlled trial. Vaccine 2006, 24, 6670–6674. [Google Scholar] [CrossRef] [PubMed]
  24. Narva, M.; Nevala, R.; Poussa, T.; Korpela, R. The effect of Lactobacillus helveticus fermented milk on acute changes in calcium metabolism in postmenopausal women. Eur. J. Nutr. 2004, 43, 61–68. [Google Scholar] [CrossRef] [PubMed]
  25. Higashikawa, F.; Noda, M.; Awaya, T.; Nomura, K.; Oku, H.; Sugiyama, M. Improvement of constipation and liver function by plant-derived lactic acid bacteria: A double-blind, randomized trial. Nutrition 2010, 26, 367–374. [Google Scholar] [CrossRef] [PubMed]
  26. Moroti, C.; Magri, L.F.S.; de Rezende Costa, M.; Cavallini, D.C.; Sivieri, K. Effect of the consumption of a new symbiotic shake on glycemia and cholesterol levels in elderly people with type 2 diabetes mellitus. Lipids Health Dis. 2012, 11, 29. [Google Scholar] [CrossRef] [PubMed]
  27. Sharafedtinov, K.K.; Plotnikova, O.A.; Alexeeva, R.I.; Sentsova, T.B.; Songisepp, E.; Stsepetova, J.; Smidt, I.; Mikelsaar, M. Hypocaloric diet supplemented with probiotic cheese improves body mass index and blood pressure indices of obese hypertensive patients—A randomized double-blind placebo-controlled pilot study. Nutr. J. 2013, 12, 138. [Google Scholar] [CrossRef] [PubMed]
  28. Mazlyn, M.M.; Nagarajah, L.H.L.; Fatimah, A.; Norimah, A.K.; Goh, K.L. Effects of a probiotic fermented milk on functional constipation: A randomized, double-blind, placebo-controlled study. J. Gastroenterol. Hepatol. 2013, 28, 1141–1147. [Google Scholar] [CrossRef] [PubMed]
  29. Peguet-Navarro, J.; Dezutter-Dambuyant, C.; Buetler, T.; Leclaire, J.; Smola, H.; Blum, S.; Bastien, P.; Breton, L.; Gueniche, A. Supplementation with oral probiotic bacteria protects human cutaneous immune homeostasis after UV exposure-double blind, randomized, placebo controlled clinical trial. Eur. J. Dermatol. 2008, 18, 504–511. [Google Scholar] [PubMed]
  30. Tseng, W.-T.; Hsu, Y.-W.; Pan, T.-M. The ameliorative effect of Monascus purpureus NTU 568-fermented rice extracts on 6-hydroxydopamine-induced neurotoxicity in SH-SY5Y cells and the rat model of Parkinson’s disease. Food Funct. 2016, 7, 752–762. [Google Scholar] [CrossRef] [PubMed]
  31. Sudo, N.; Chida, Y.; Aiba, Y.; Sonoda, J.; Oyama, N.; Yu, X.N.; Kubo, C.; Koga, Y. Postnatal microbial colonization programs the hypothalamic–pituitary–adrenal system for stress response in mice. J. Physiol. 2004, 558, 263–275. [Google Scholar] [CrossRef] [PubMed]
  32. Shen, Q.; Shang, N.; Li, P. In vitro and in vivo antioxidant activity of Bifidobacterium animalis 01 isolated from centenarians. Curr. Microbiol. 2011, 62, 1097–1103. [Google Scholar] [CrossRef] [PubMed]
  33. Li, S.; Zhao, Y.; Zhang, L.; Zhang, X.; Huang, L.; Li, D.; Niu, C.; Yang, Z.; Wang, Q. Antioxidant activity of Lactobacillus plantarum strains isolated from traditional Chinese fermented foods. Food Chem. 2012, 135, 1914–1919. [Google Scholar] [CrossRef] [PubMed]
  34. Moussa, L.; Bézirard, V.; Salvador-Cartier, C.; Bacquié, V.; Lencina, C.; Lévêque, M.; Braniste, V.; Ménard, S.; Théodorou, V.; Houdeau, E. A low dose of fermented soy germ alleviates gut barrier injury, hyperalgesia and faecal protease activity in a rat model of inflammatory bowel disease. PLoS ONE 2012, 7, e49547. [Google Scholar] [CrossRef] [PubMed]
  35. Bondia-Pons, I.; Nordlund, E.; Mattila, I.; Katina, K.; Aura, A.-M.; Kolehmainen, M.; Orešič, M.; Mykkänen, H.; Poutanen, K. Postprandial differences in the plasma metabolome of healthy Finnish subjects after intake of a sourdough fermented endosperm rye bread versus white wheat bread. Nutr. J. 2011, 10, 116. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  36. Mueller, T.; Voigt, W. Fermented wheat germ extract-nutritional supplement or anticancer drug? Nutr. J. 2011, 10, 89. [Google Scholar] [CrossRef] [PubMed]
  37. Ryan, E.P.; Heuberger, A.L.; Weir, T.L.; Barnett, B.; Broeckling, C.D.; Prenni, J.E. Rice bran fermented with Saccharomyces boulardii generates novel metabolite profiles with bioactivity. J. Agric. Food Chem. 2011, 59, 1862–1870. [Google Scholar] [CrossRef] [PubMed]
  38. Mayer, E.A.; Tillisch, K.; Gupta, A. Gut/brain axis and the microbiota. J. Clin. Investig. 2015, 125, 926–938. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  39. Carabotti, M.; Scirocco, A.; Maselli, M.A.; Severi, C. The gut-brain axis: Interactions between enteric microbiota, central and enteric nervous systems. Ann. Gastroenterol. Q. Publ. Hell. Soc. Gastroenterol. 2015, 28, 203–209. [Google Scholar]
  40. Bienenstock, J.; Kunze, W.; Forsythe, P. Microbiota and the gut-brain axis. Nutr. Rev. 2015, 73, 28–31. [Google Scholar] [CrossRef] [PubMed]
  41. Chen, M.; Sun, Q.; Giovannucci, E.; Mozaffarian, D.; Manson, J.E.; Willett, W.C.; Hu, F.B. Dairy consumption and risk of type 2 diabetes: 3 cohorts of US adults and an updated meta-analysis. BMC Med. 2014, 12, 215. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  42. Nagata, S.; Asahara, T.; Wang, C.; Suyama, Y.; Chonan, O.; Takano, K.; Daibou, M.; Takahashi, T.; Nomoto, K.; Yamashiro, Y. The effectiveness of Lactobacillus beverages in controlling infections among the residents of an aged care facility: A randomized placebo-controlled double-blind trial. Ann. Nutr. Metab. 2016, 68, 51–59. [Google Scholar] [CrossRef] [PubMed]
  43. Byun, M.; Yu, O.; Cha, Y.; Park, T. Korean traditional Chungkookjang improves body composition, lipid profiles and atherogenic indices in overweight/obese subjects: A double-blind, randomized, crossover, placebo-controlled clinical trial. Eur. J. Clin. Nutr. 2016, 70, 1116–1122. [Google Scholar] [CrossRef] [PubMed]
  44. Kim, E.K.; An, S.-Y.; Lee, M.-S.; Kim, T.H.; Lee, H.-K.; Hwang, W.S.; Choe, S.J.; Kim, T.-Y.; Han, S.J.; Kim, H.J. Fermented kimchi reduces body weight and improves metabolic parameters in overweight and obese patients. Nutr. Res. 2011, 31, 436–443. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  45. Sereni, A.; Cesari, F.; Gori, A.M.; Maggini, N.; Marcucci, R.; Casini, A.; Sofi, F. Cardiovascular benefits from ancient grain bread consumption: Findings from a double-blinded randomized crossover intervention trial. Int. J. Food Sci. Nutr. 2017, 68, 97–103. [Google Scholar] [CrossRef] [PubMed]
  46. Bafeta, A.; Koh, M.; Riveros, C.; Ravaud, P. Harms reporting in randomized controlled trials of interventions aimed at modifying microbiota: A systematic review. Ann. Intern. Med. 2018, 169, 240–247. [Google Scholar] [CrossRef] [PubMed]
  47. Ezeonu, C.S.; Ezeonu, N.C. Biological Risks Associated with Fermented Diary Products, Fruits, Vegetables and Meat: A Critical Review. Adv. Biotechnol. Microbiol. 2017, 2, 555577. [Google Scholar] [CrossRef]
  48. Capozzi, V.; Fragasso, M.; Romaniello, R.; Berbegal, C.; Russo, P.; Spano, G. Spontaneous food fermentations and potential risks for human health. Fermentation 2017, 3, 49. [Google Scholar] [CrossRef]
  49. Chrun, R.; Hosotani, Y.; Kawasaki, S.; Inatsu, Y. Microbioligical Hazard Contamination in Fermented Vegetables Sold in Local Markets in Cambodia. Biocontrol Sci. 2017, 22, 181–185. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  50. Park, E.-J.; Kim, K.-H.; Abell, G.C.; Kim, M.-S.; Roh, S.W.; Bae, J.-W. Metagenomic analysis of the viral communities in fermented foods. Appl. Environ. Microbiol. 2011, 77, 1284–1291. [Google Scholar] [CrossRef] [PubMed]
  51. Alvarez, M.A.; Moreno-Arribas, M.V. The problem of biogenic amines in fermented foods and the use of potential biogenic amine-degrading microorganisms as a solution. Trends Food Sci. Technol. 2014, 39, 146–155. [Google Scholar] [CrossRef] [Green Version]
  52. Mohedano, M.; López, P.; Spano, G.; Russo, P. Controlling the formation of biogenic amines in fermented foods. In Advances in Fermented Foods and Beverages; Elsevier: Amsterdam, The Netherlands, 2015; pp. 273–310. [Google Scholar]
  53. Spano, G.; Russo, P.; Lonvaud-Funel, A.; Lucas, P.; Alexandre, H.; Grandvalet, C.; Coton, E.; Coton, M.; Barnavon, L.; Bach, B. Biogenic amines in fermented foods. Eur. J. Clin. Nutr. 2010, 64, S95–S100. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  54. Zhai, H.; Yang, X.; Li, L.; Xia, G.; Cen, J.; Huang, H.; Hao, S. Biogenic amines in commercial fish and fish products sold in southern China. Food Control 2012, 25, 303–308. [Google Scholar] [CrossRef]
  55. Conlon, M.A.; Bird, A.R. The impact of diet and lifestyle on gut microbiota and human health. Nutrients 2014, 7, 17–44. [Google Scholar] [CrossRef] [PubMed]
  56. Flint, H.J.; Juge, N. Role of microbes in carbohydrate digestion. Food Sci. Technol. 2015, 29, 24–26. [Google Scholar]
  57. Lopetuso, L.R.; Scaldaferri, F.; Petito, V.; Gasbarrini, A. Commensal Clostridia: Leading players in the maintenance of gut homeostasis. Gut Pathog. 2013, 5, 23. [Google Scholar] [CrossRef] [PubMed]
  58. Thursby, E.; Juge, N. Introduction to the human gut microbiota. Biochem. J. 2017, 474, 1823–1836. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  59. Bull, M.J.; Plummer, N.T. Part 1: The human gut microbiome in health and disease. Integr. Med. A Clin. J. 2014, 13, 17–22. [Google Scholar]
  60. Barczynska, R.; Kapusniak, J.; Litwin, M.; Slizewska, K.; Szalecki, M. Dextrins from maize starch as substances activating the growth of bacteroidetes and actinobacteria simultaneously inhibiting the growth of firmicutes, responsible for the occurrence of obesity. Plant Foods Hum. Nutr. 2016, 71, 190–196. [Google Scholar] [CrossRef] [PubMed]
  61. Saraswati, S.; Sitaraman, R. Aging and the human gut microbiota—From correlation to causality. Front. Microbiol. 2015, 5, 764. [Google Scholar] [CrossRef] [PubMed]
  62. Wang, Y.; Wang, B.; Wu, J.; Jiang, X.; Tang, H.; Nielsen, O.H. Modulation of gut microbiota in pathological states. Engineering 2017, 3, 83–89. [Google Scholar] [CrossRef]
  63. Dinan, T.G.; Cryan, J.F. Regulation of the stress response by the gut microbiota: Implications for psychoneuroendocrinology. Psychoneuroendocrinology 2012, 37, 1369–1378. [Google Scholar] [CrossRef] [PubMed]
  64. Foster, J.A.; Neufeld, K.-A.M. Gut–brain axis: How the microbiome influences anxiety and depression. Trends Neurosci. 2013, 36, 305–312. [Google Scholar] [CrossRef] [PubMed]
  65. Farnworth, E.R.T. Handbook of Fermented Functional Foods; CRC Press: Boca Raton, FL, USA, 2008. [Google Scholar]
  66. Brüssow, H.; Parkinson, S.J. You are what you eat. Nat. Biotechnol. 2014, 32, 243–245. [Google Scholar] [CrossRef] [PubMed]
  67. Louis, P.; Hold, G.L.; Flint, H.J. The gut microbiota, bacterial metabolites and colorectal cancer. Nat. Rev. Microbiol. 2014, 12, 661–672. [Google Scholar] [CrossRef] [PubMed]
  68. Ríos-Covián, D.; Ruas-Madiedo, P.; Margolles, A.; Gueimonde, M.; de los Reyes-Gavilán, C.G.; Salazar, N. Intestinal short chain fatty acids and their link with diet and human health. Front. Microbiol. 2016, 7, 185. [Google Scholar] [CrossRef] [PubMed]
  69. Fernandes, J.; Su, W.; Rahat-Rozenbloom, S.; Wolever, T.; Comelli, E. Adiposity, gut microbiota and faecal short chain fatty acids are linked in adult humans. Nutr. Diabetes 2014, 4, e121. [Google Scholar] [CrossRef] [PubMed]
  70. Rowland, I.; Gibson, G.; Heinken, A.; Scott, K.; Swann, J.; Thiele, I.; Tuohy, K. Gut microbiota functions: Metabolism of nutrients and other food components. Eur. J. Nutr. 2017. [Google Scholar] [CrossRef] [PubMed]
  71. Tan, J.; McKenzie, C.; Potamitis, M.; Thorburn, A.N.; Mackay, C.R.; Macia, L. The role of short-chain fatty acids in health and disease. In Advances in Immunology; Elsevier: Amsterdam, The Netherlands, 2014; Volume 121, pp. 91–119. [Google Scholar]
  72. Scott, K.P.; Gratz, S.W.; Sheridan, P.O.; Flint, H.J.; Duncan, S.H. The influence of diet on the gut microbiota. Pharmacol. Res. 2013, 69, 52–60. [Google Scholar] [CrossRef] [PubMed]
  73. Kamada, N.; Chen, G.Y.; Inohara, N.; Núñez, G. Control of pathogens and pathobionts by the gut microbiota. Nat. Immunol. 2013, 14, 685–690. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  74. Slavin, J. Fiber and prebiotics: Mechanisms and health benefits. Nutrients 2013, 5, 1417–1435. [Google Scholar] [CrossRef] [PubMed]
  75. Zhao, X.; Jiang, Z.; Yang, F.; Wang, Y.; Gao, X.; Wang, Y.; Chai, X.; Pan, G.; Zhu, Y. Sensitive and simplified detection of antibiotic influence on the dynamic and versatile changes of fecal short-chain fatty acids. PLoS ONE 2016, 11, e0167032. [Google Scholar] [CrossRef] [PubMed]
  76. De Vadder, F.; Kovatcheva-Datchary, P.; Goncalves, D.; Vinera, J.; Zitoun, C.; Duchampt, A.; Bäckhed, F.; Mithieux, G. Microbiota-generated metabolites promote metabolic benefits via gut-brain neural circuits. Cell 2014, 156, 84–96. [Google Scholar] [CrossRef] [PubMed]
  77. Methé, B.A.; Nelson, K.E.; Pop, M.; Creasy, H.H.; Giglio, M.G.; Huttenhower, C.; Gevers, D.; Petrosino, J.F.; Abubucker, S.; Badger, J.H. A framework for human microbiome research. Nature 2012, 486, 215–221. [Google Scholar] [Green Version]
  78. Huttenhower, C.; Gevers, D.; Knight, R.; Abubucker, S.; Badger, J.H.; Chinwalla, A.T.; Creasy, H.H.; Earl, A.M.; FitzGerald, M.G.; Fulton, R.S. Structure, function and diversity of the healthy human microbiome. Nature 2012, 486, 207–214. [Google Scholar] [Green Version]
  79. Cryan, J.F.; Dinan, T.G. Mind-altering microorganisms: The impact of the gut microbiota on brain and behaviour. Nat. Rev. Neurosci. 2012, 13, 701–712. [Google Scholar] [CrossRef] [PubMed]
  80. De Filippo, C.; Cavalieri, D.; di Paola, M.; Ramazzotti, M.; Poullet, J.B.; Massart, S.; Collini, S.; Pieraccini, G.; Lionetti, P. Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa. Proc. Natl. Acad. Sci. USA 2010, 107, 14691–14696. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  81. Clemente, J.C.; Ursell, L.K.; Parfrey, L.W.; Knight, R. The impact of the gut microbiota on human health: An integrative view. Cell 2012, 148, 1258–1270. [Google Scholar] [CrossRef] [PubMed]
  82. Argyri, K.; Athanasatou, A.; Bouga, M.; Kapsokefalou, M. The potential of an in vitro digestion method for predicting glycemic response of foods and meals. Nutrients 2016, 8, 209. [Google Scholar] [CrossRef]
  83. Charaslertrangsi, T. Developing the Multi-Stage Gut Simulator System to Study Gut Microbiota. Ph.D. Thesis, University of Guelph, Guelph, ON, Canada, August 2014. [Google Scholar]
  84. Hur, S.J.; Lim, B.O.; Decker, E.A.; McClements, D.J. In vitro human digestion models for food applications. Food Chem. 2011, 125, 1–12. [Google Scholar] [CrossRef]
  85. Lee, S.-J.; Lee, S.Y.; Chung, M.-S.; Hur, S.J. Development of novel in vitro human digestion systems for screening the bioavailability and digestibility of foods. J. Funct. Foods 2016, 22, 113–121. [Google Scholar] [CrossRef]
  86. Fung, T.C.; Olson, C.A.; Hsiao, E.Y. Interactions between the microbiota, immune and nervous systems in health and disease. Nat. Neurosci. 2017, 20, 145–155. [Google Scholar] [CrossRef] [PubMed]
  87. Powell, N.; Walker, M.M.; Talley, N.J. The mucosal immune system: Master regulator of bidirectional gut-brain communications. Nat. Rev. Gastroenterol. Hepatol. 2017. [Google Scholar] [CrossRef] [PubMed]
Figure 1. Relationship between fermented foods, gut microbiota, and impact on the human health.
Figure 1. Relationship between fermented foods, gut microbiota, and impact on the human health.
Fermentation 04 00090 g001
Table 1. Examples of the impact studies of fermented foods on humans.
Table 1. Examples of the impact studies of fermented foods on humans.
Fermented FoodMicroorganism PresentBeneficial Effect AssociateStudy GroupReference
YogurtLactobacillus delbrueckii ssp. bulgaricus and Streptococcus thermophilusLower risk of T2DNon-diabetic human volunteers,
N = 194,458
Fermented milkLactobacillus casei ShirotaNormalization of bowel movement and infection controlElderly human volunteers,
N = 72
Fermented milkLactobacillus casei DN-114 001Reduction of respiratory infectionElderly human volunteers,
N = 1072
Chungkookjang (Korean fermented soybean paste)Bacillus licheniformisImprovement of body composition in overweight and obese adultsOverweight/obese human volunteers,
N = 120
Kimchi (Korean fermented and salted vegetables)Lactobacillus plantarum, Lactobacillus brevis, Pediococcus cerevisiae, Enterococcus faecalis and Leuconostoc mesenteroidesReduction of body weightOverweight/obese human volunteers,
N = 22
Ancient grain breadSaccharomyces cerevisiaeReduction of cardiovascular risk factorsHealthy human volunteers,
N = 45
N—number of participants.

Share and Cite

MDPI and ACS Style

Mota de Carvalho, N.; Costa, E.M.; Silva, S.; Pimentel, L.; Fernandes, T.H.; Pintado, M.E. Fermented Foods and Beverages in Human Diet and Their Influence on Gut Microbiota and Health. Fermentation 2018, 4, 90.

AMA Style

Mota de Carvalho N, Costa EM, Silva S, Pimentel L, Fernandes TH, Pintado ME. Fermented Foods and Beverages in Human Diet and Their Influence on Gut Microbiota and Health. Fermentation. 2018; 4(4):90.

Chicago/Turabian Style

Mota de Carvalho, Nelson, Eduardo M. Costa, Sara Silva, Lígia Pimentel, Tito H. Fernandes, and Manuela Estevez Pintado. 2018. "Fermented Foods and Beverages in Human Diet and Their Influence on Gut Microbiota and Health" Fermentation 4, no. 4: 90.

Note that from the first issue of 2016, this journal uses article numbers instead of page numbers. See further details here.

Article Metrics

Back to TopTop