Research Progress in the Mechanisms of Microbial Furfural Tolerance and Future Research Prospects for Its Biotechnological Exploitation
Abstract
1. Introduction
2. Microbial Toxicity Mechanisms of Furfural
2.1. Furfural Influences on Microbial DNA and the Underlying Mechanisms
2.2. Furfural Influences on Microbial Proteins and the Underlying Mechanisms
2.3. Furfural Influences on Microbial Lipids and the Underlying Mechanisms
3. Mechanism of Microbial Tolerance to Furfural
3.1. Efficient Transformation of Furfural
| Microorganisms | Key Discoveries | References |
|---|---|---|
| Aldehyde reductase | ||
| Clostridium beijerinckii NCIMB 8052 | Plasmid overexpression of aldo-keto reductase (AKR) (Cbei_3974) and short-chain dehydrogenase/reductase (SDR) (Cbei_3904) | [36] |
| S. cerevisiae BY4742 | Overexpression of aldehyde reductase (RDS1) | [37] |
| Clostridium beijerinckii NCIMB 8052 (Cb) | Constitutive expression of aldo-keto reductase (Cbei_3974) | [38] |
| Scheffersomyces stipitis | Overexpression of aldehyde reductases (SsOye3.3p and SsOye2.6p) | [39] |
| Kodamaea ohmeri SSK | Overexpression of the aldo-keto/aldehyde reductase (AKR/ARI) gene | [40] |
| Corynebacterium glutamicum S9114 | Overexpression of CGS9114_RS01115 (oxidoreductase) | [41] |
| Aldehyde dehydrogenase | ||
| Yarrowia lipolytica PO1f | Overexpression of YALI0E15400p (FALDH2) | [42] |
| K. marxianus NRRL Y-50883 (SLP1) | Upregulation of the aldehyde dehydrogenases (ALD4 and ALD6) | [43] |
| Kodamaea ohmeri SSK | Overexpression of the aldehyde dehydrogenase (ALDH) gene | [40] |
| Neurospora crassa T112 | Overexpression of aldehyde dehydrogenase mutants ahd-2 (NCU00378) | [44] |
| Kluyveromyces marxianus NBRC1777 | Overexpression of a novel alpha/beta hydrolase (KmYME) | [45] |
| Alcohol dehydrogenases | ||
| Thermoanaerobacter pseudethanolicus 39E | Overexpression of butanol dehydrogenase (BdhA) | [35] |
| S. cerevisiae MT8-1X | Overexpression of transaldolase (TAL) and alcohol dehydrogenase (ADH) | [46] |
| E. coli XW92 | Protein engineering to increase FucO activity | [47] |
| Kodamaea ohmeri SSK | Overexpression of the alcohol dehydrogenase (ADH) gene | [40] |
| S. cerevisiae BY4742 | Overexpression of ADH7 (NADPH-dependent alcohol dehydrogenases) | [48] |
| Amorphotheca resinae ZN1 | Overexpression of two Zn-dependent alcohol dehydrogenase genes and five AKR/ARI genes | [49] |
| Clostridium beijerinckii NCIMB 8052 | Overexpressing glycerol dehydrogenase (Gldh) genes (dhaD1 and gldA1) and dihydroxyacetone kinase (dhaK) | [50] |
| Scheffersomyces stipitis CBS 6054 | Overexpression of aryl-alcohol dehydrogenases (SsAAD2, SsAAD3, and SsAAD4) | [51] |
3.2. Regulation of Cell Membrane Structure and Transport System
| Microorganisms | Key Discoveries | Reference |
|---|---|---|
| E. coli LY180 | Overexpression of polyamine transporters | [6] |
| E. coli LY180 | Disruption of YqhC, a transcriptional regulator belonging to the AraC/XylS family | [27] |
| Bacillus coagulans DSM2314 | An upregulation of SigB and genes promoted by SigB, such as NhaX and YsnF | [65] |
| S. cerevisiae CEN.PK113-7D | Overexpression of Rad18 and Gcn1 to increase the activities of catalase (CAT) and superoxide dismutase (SOD) | [66] |
| Aureobasidium pullulans CCTCC M2012223 | Key genes (i.e., SIR, GSS, CYS, and GSR) involved in sulfur assimilation pathway | [67] |
| Pseudomonas putida KT2440 | Overexpression of ATP-binding cassette (ABC) transporters and a hypothetical protein | [68] |
| E. coli BW25113 ΔrecA::Kan | Overexpression of thymidylate synthase or GroES chaperone | [69] |
| E. coli KSYH(DE3) | Overexpression of PHB synthetic genes (bktB, phaB, and phaC from Ralstonia eutropha H16 | [70] |
| S. cerevisiae BY4742 | Overexpression of a putative transcription factor (YPR015C) | [71] |
| Candida glycerinogenes UA5 | Overexpression of transcription factor, either STB5 or ETP1 | [72] |
| S. cerevisiae BY4741 | Overexpression of transcription factor YAP1(C620F) | [73] |
| Pichia pastoris X33 | Overexpression of high-affinity cysteine transporter (YCT1), and Pyrimidine pathway-regulatory protein (PPR1) | [74] |
| S. cerevisiae ER-6c (MAT a) and S. cerevisiae ER-3a (MAT α) | Overexpression of the transcription activator Msn2 | [75] |
| S. cerevisiae | Overexpression of Yap1p | [76] |
| S. cerevisiae GSE16-MCR1 | Overexpression of the mitochondrial NADH-cytochrome b5 reductase (MCR1) | [77] |
| E. coli LY180 | Overexpression of thyA gene (coding for thymidylate synthase) | [78] |
| Clostridium saccharoperbutylacetonicum N1-4 (HMT) (DSM 14923) | Overexpression efflux pump genes (srpB) from Pseudomonas putida | [79] |
| S. cerevisiae Y258 | Overexpressing isocitrate dehydrogenase (IDH1) and dicarboxylate carrier (DIC1) | [80] |
| E. coli LGE2 | Overexpression of ycfR (encoding a stress-induced protein) | [81] |
| S. cerevisiae | Disruption of SIZ1, a gene encoding an E3 SUMO-protein ligase | [82] |
| S. cerevisiae BY4717 | Overexpression of the bifunctional glutathione (GSH) synthetase genes GCSGS | [83] |
| E. coli CFA101 | Overexpression of cyclopropane-fatty acid-acyl-phospholipid synthase (cfa) | [84] |
| E. coli BL21(DE3) | Overexpression of Zmo0994 to trigger genes involved in aerobic respiration for ATP synthesis | [85] |
| Zymomonas mobilis 8b | Overexpression of ZMO0465 and cysteine synthase operon ZMO0003-0006 | [86] |
| S. cerevisiae BY4741 | Deletion of PHO13 encoding p-nitrophenylphosphatase | [87] |
| S. cerevisiae CEN.PK 113-5D | Overexpression of γ-glutamylcysteine synthetase (GSH1) | [88] |
| S. cerevisiae D452-2 | Disruption of ornithine decarboxylase and the polyamine transporter and overexpression of SPE, involved in the polyamine biosynthesis | [89] |
| Candida tropicalis YB-3 | Overexpression of sulfate adenosine transferase, glutathione reductase, and inositol phosphate synthase | [90] |
3.3. Adaptive Reconstruction of Metabolic Network
| Microorganisms | Key Discoveries | Reference |
|---|---|---|
| E. coli LY180 | Overexpression of transhydrogenase (pntAB) | [5] |
| E. coli LY180 | Deleting yqhD and dkgA (NADPH-Dependent Oxidoreductase) | [27] |
| S. cerevisiae BY4741 (MATa his3Δ1 leu2Δ0 met15Δ0 ura3Δ0) | Mutants of zwf1, gnd1, rpe1, and tkl1 | [92] |
| S. cerevisiae CCUG53310 and S. cerevisiae PE-2 | Overexpression of PRS3 (Prs3p synthesizes 5-phospho-ribosyl-1(alpha)-pyrophosphate (PRPP) in an ATP-dependent reaction) | [93] |
| Zymomonas mobilis F211 | Increasing NAD(P)H biosynthesis | [96] |
| S. cerevisiae | Overexpression of genes involved in cofactor biosynthesis: NADH dehydrogenase (NDH), GLR1, OYE2, ZWF1, and IDP1 genes responsible for the interconversion of NADPH and NADP+, overexpression of NAD(P)+ transhydrogenase (PNTB) and NAD+ kinase (POS5) | [98] |
| Cupriavidus necator NCIMB 11599 | Inserting the nicotine amide salvage pathway genes pncB and nadE to increase the NAD(P)H pool | [99] |
| E. coli HM501 | Activation of the nicotine amide salvage pathway (pncB and nadE) | [100] |
3.4. Activation of Oxidative Stress Defense System
4. Strategies for Constructing Highly Furfural-Tolerant Microorganisms
4.1. Adaptive Laboratory Evolution
4.2. Precision Modification by Genetic Engineering
4.3. Random Mutagenesis for Improving Furfural Tolerance in Microorganisms
5. Challenges and Future Prospects
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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| Technologies | ALE | Rational Genetic Engineering | Random Mutagenesis |
|---|---|---|---|
| Mechanistic Insight | Low (polygenes) | High (defined genotype) | Very low (stochastic noise) |
| Speed | Slow (long-term cultivation) | Fast (direct construction) | Moderate |
| Mechanism Predictability | Low | High | Very low |
| Knowledge Dependency | Low | High | Low |
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Xiong, J.; Chen, M.; Zhang, L.; Zhou, Q.; Huang, Z.; Lin, X.; Fang, X.; Ye, X.; Zhu, W.; Liu, W.; et al. Research Progress in the Mechanisms of Microbial Furfural Tolerance and Future Research Prospects for Its Biotechnological Exploitation. Fermentation 2026, 12, 232. https://doi.org/10.3390/fermentation12050232
Xiong J, Chen M, Zhang L, Zhou Q, Huang Z, Lin X, Fang X, Ye X, Zhu W, Liu W, et al. Research Progress in the Mechanisms of Microbial Furfural Tolerance and Future Research Prospects for Its Biotechnological Exploitation. Fermentation. 2026; 12(5):232. https://doi.org/10.3390/fermentation12050232
Chicago/Turabian StyleXiong, Jiaying, Meixia Chen, Laiping Zhang, Qi Zhou, Zhenyu Huang, Xiaobin Lin, Xiaomin Fang, Xiangdong Ye, Weiping Zhu, Wei Liu, and et al. 2026. "Research Progress in the Mechanisms of Microbial Furfural Tolerance and Future Research Prospects for Its Biotechnological Exploitation" Fermentation 12, no. 5: 232. https://doi.org/10.3390/fermentation12050232
APA StyleXiong, J., Chen, M., Zhang, L., Zhou, Q., Huang, Z., Lin, X., Fang, X., Ye, X., Zhu, W., Liu, W., & Shi, A. (2026). Research Progress in the Mechanisms of Microbial Furfural Tolerance and Future Research Prospects for Its Biotechnological Exploitation. Fermentation, 12(5), 232. https://doi.org/10.3390/fermentation12050232
