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Non-Coding RNA, Volume 12, Issue 4

2026 August - 11 articles

Cover Story: Circular RNAs (circRNAs) are abundant, stable non-coding transcripts enriched in the nervous system, showing compartmentalized localization within dendrites, axons and synapses. In this review, we examine how circRNAs reach these sites, focusing on RNP complexes exploiting kinesin/dynein cytoskeletal transport. Using circHomer1, CDR1as and circDlc1(2) as paradigms, we discuss how circRNA trafficking shapes synaptic gene expression via microRNA interaction and RNA-binding protein (RBP) scaffolding, while circPcmtd1 is locally translated into a functional micropeptide. We further show how disease-linked RBPs such as FUS disrupt circRNA transport in ALS, trapping transcripts within pathological aggregates. Altogether, we position circRNAs as dynamically and spatially regulated components of neuronal RNA biology relevant to synaptic function. View this paper
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Articles (11)

  • Article
  • Open Access
928 Views
25 Pages

Long-Read RNA Sequencing Reveals an Isoform Switching Pattern in Healthy Microglial Cell Lines Exposed to Radiotherapy

  • Tatiana Zuppelli,
  • Laura Orlando,
  • Giuseppe N. Conti,
  • Sofia P. Lombardo and ,
  • Lucia Longhitano,
  • Giulia Chisari,
  • Cesarina Giallongo,
  • Francesco Bellia,
  • Maria Gabriella Sabini and
  • Giovanni Li Volti
  • + 13 authors+ 8 authors

Background/Objectives: Radiotherapy (RT) is a fundamental treatment for brain tumors but often leads to long-term neurotoxicity, partly caused by microglial dysfunction. In this study, we used long-read RNA sequencing (LR-RNA-seq) to map the isoform-...

  • Article
  • Open Access
912 Views
18 Pages

An Exploratory Study on Transcriptomic Profiling of Circulating miRNA Associated with Hub Genes in the Development of Polycystic Ovary Syndrome

  • Yogesh Vetriselvan,
  • Jayakumar Swetha,
  • Manoranjani Murugan,
  • Irisappan Ganesh and ,
  • Vishnu Bhat Ballambattu,
  • Pushpa Premanath Kotur,
  • Deepa Shanmugam,
  • Marcella Sherin Samuel and
  • Sambandam Ravikumar
  • + 4 authors+ 0 author

Background: Polycystic ovary syndrome (PCOS) is a complex endocrine disorder that affects women of reproductive age, often associated with metabolic issues, causing infertility. Although it is common, the cause of PCOS remains unknown, and early diag...

(This article belongs to the Section Small Non-Coding RNA)
  • Protocol
  • Open Access
1,259 Views
20 Pages

Fraction-Seq: An Integrated Experimental and Computational Workflow for Determining the Localization and Abundance of Small Non-Coding RNAs in Subcellular Compartments

  • Siddhartha Shah,
  • Tess Cherlin,
  • Yi Jing,
  • Stepan Nersisyan and ,
  • Benjamin Leiby and
  • Isidore Rigoutsos
  • + 1 author+ 0 author

Small non-coding RNAs (sncRNAs) have garnered considerable attention in recent years, following accumulating evidence of their critical roles in many cellular processes. Among sncRNAs, microRNAs (miRNAs) and their isoforms (isomiRs), tRNA-derived fra...

(This article belongs to the Section Small Non-Coding RNA)
  • Article
  • Open Access
807 Views
9 Pages

Background: The RNA interference (RNAi) pathway is a highly conserved antiviral mechanism in eukaryotes, including insects such as fruit flies. Many viruses have therefore evolved mechanisms that protect their transcripts and/or genomes; how effectiv...

  • Review
  • Open Access
1,188 Views
13 Pages

Circular RNAs in Neurons: From Transport to Function

  • Nicolò Salvi and
  • Mariangela Morlando

Circular RNAs (circRNAs) have recently emerged as a class of abundant and remarkably stable non-coding RNAs preferentially enriched in the nervous system. In neurons, the fine-tuned spatial regulation of gene expression is critical for proper synapti...

(This article belongs to the Section Long Non-Coding RNA)
  • Article
  • Open Access
693 Views
21 Pages

Efficacy of Bioengineered PD-L1 siRNA for Immunotherapy Against Non-Small Cell Lung Cancer Cells

  • Neelu Batra,
  • Mei-Juan Tu,
  • Su Guan,
  • Jonathan W. Riess and
  • Ai-Ming Yu

Background/Objectives: Recent advances in immunotherapy have revolutionized cancer treatment, as exemplified by multiple monoclonal antibodies against programmed cell death protein 1 (PD-1) or programmed death-ligand 1 (PD-L1). Nevertheless, immunoth...

(This article belongs to the Section Small Non-Coding RNA)
  • Review
  • Open Access
1,304 Views
20 Pages

Rett syndrome (RTT) is a severe X-linked neurodevelopmental disorder that is caused in most cases by pathogenic variants in MECP2, the gene encoding methyl-CpG-binding protein 2 (MeCP2). Despite substantial progress in the development of gene therapy...

(This article belongs to the Section Clinical Applications of Non-Coding RNA)
  • Article
  • Open Access
1,105 Views
24 Pages

Background/Objectives: Long non-coding RNAs (lncRNAs) are important regulators of tumor biology through their interactions with DNA, proteins, and non-coding RNAs. Although ENST00000615487.1 (also known as CTD-2396E7.11/AC010503.4) has been associate...

  • Editorial
  • Open Access
1,185 Views
12 Pages

The Non-Coding RNA Journal Club: Highlights on Recent Papers—15

  • Francisco J. Enguita,
  • Suresh K. Alahari,
  • Luca Agnelli,
  • Raphaël Zemmour and ,
  • Florent Hubé,
  • Patrick K. T. Shiu,
  • Sophia M. Zhang,
  • Mohammadjavad Mohammadi,
  • Shuxing Zhang and
  • Ling Yang
  • + 19 authors+ 14 authors

We are delighted to share with you our fifteenth Journal Club and highlight some of the most interesting papers published recently [...]

(This article belongs to the Collection The Non-Coding RNA Journal Club: Highlights on Recent Papers)
  • Article
  • Open Access
1 Citations
1,275 Views
17 Pages

Background: MicroRNAs (miRNAs) are small, non-coding RNA molecules that regulate gene expression post-transcriptionally by binding to target messenger RNAs (mRNAs) and suppressing their expression. Competing endogenous RNAs (ceRNAs), including mRNAs...

(This article belongs to the Section Computational Biology)
  • Article
  • Open Access
1,603 Views
17 Pages

P22 Small Noncoding RNAs Are Actively Secreted in Salmonella Outer Membrane Vesicles During Bacteriophage Infection

  • Sayema Naaz,
  • Haley A. Kominek,
  • Lydia A. Hayes-Guastella,
  • Autumn M. McDaniel and ,
  • Enas S. Alsatari,
  • Adeyeye I. Haastrup,
  • Olivia G. Clark,
  • Devin M. Katerski,
  • Francois O. Prinsloo and
  • Glen M. Borchert
  • + 14 authors+ 9 authors

Background/Objectives: Outer membrane vesicles (OMVs) are membrane-encapsulated spherical structures ~120 nm in diameter derived from Gram-negative bacterial cell envelopes. OMVs are primarily generated by outer membrane blebbing but contain proteins...

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Non-Coding RNA - ISSN 2311-553X