Development and Evaluation of a Novel Taqman Real-Time PCR Assay for Rapid Detection of Mycoplasma bovis: Comparison of Assay Performance with a Conventional PCR Assay and Another Taqman Real-Time PCR Assay †
Abstract
:1. Introduction
2. Experimental Section
2.1. Clinical Specimens
2.2. DNA Extraction
2.3. TaqMan Real-Time PCR Assay
Gene Target | Oligo | Sequence (5'→3') | Reference | Product Size |
---|---|---|---|---|
uvrC | Forward Primer | GAG AAT GCT TCA GTA TTT TGA CGG | This study | 170 bp |
Reverse Primer | CAA AAG CAA AAT GTT AAA TTC AGG | This study | ||
Probe | (6 FAM) CAT ATA TAA GTG AGA CTA ACT TAT T(MGB) | [18] | ||
uvrC | F2024 | TCT AAT TTT TTC ATC ATC GCT AAT GC | [12] | 112 bp |
R2135 | TCA GGC CTT TGC TAC AAT GAA C | |||
M.bov | (FAM) AAC TGC ATC ATA TCA CAT ACT (MGB) | |||
16S rRNA | Forward Primer | CCT TTT AGA TTG GGA TAG CGG ATG | [19] | 360 bp |
Reverse Primer | CCG TCA AGG TAG CAT CAT TTC CTA T |
2.4. Culture
2.5. Sensitivity and Specificity Analyses
Number | Species | Strain | Real-Time PCR |
---|---|---|---|
1 | Mycoplasma bovis | ATCC 25523 | Positive |
2 | Mycoplasma bovis | ATCC 27369 | Positive |
3 | Mycoplasma bovis | Field isolate | Positive |
4 | Mycoplasma alkalescens | ATCC 29103 | Negative |
5 | Mycoplasma canadense | ATCC 29418 | Negative |
6 | Mycoplasma arginini | ATCC 23838 | Negative |
7 | Mycoplasma bovigenitalium | ATCC 27748 | Negative |
8 | Staphylococcus aureus | Field isolate | Negative |
9 | Streptococcus agalactiae | Field isolate | Negative |
10 | Escherichia coli | Field isolate | Negative |
11 | Corynebacterium pseudotuberculosis | Field isolate | Negative |
12 | Streptococcus uberis | Field isolate | Negative |
13 | Coagulase Negative Staphylococcus | Field isolate | Negative |
14 | Pseudomonas aeruginosa | Field isolate | Negative |
15 | Klebsiella pneumonia | Field isolate | Negative |
16 | Proteus mirabilis | Field isolate | Negative |
17 | Serratia marcescens | Field isolate | Negative |
18 | Entereococcus faecalis | Field isolate | Negative |
19 | Arcanobacterium pyogenes | Field isolate | Negative |
20 | Candida spp | Field isolate | Negative |
21 | Histophilus somnus | Field isolate | Negative |
22 | Salmonella spp | Field isolate | Negative |
23 | Bacillus cereus | Field isolate | Negative |
24 | Pasteurella multocida | Field isolate | Negative |
25 | Mannheimia haemolytica | Field isolate | Negative |
3. Results and Discussion
3.1. Limit of Detection
3.2. Assay Specificity
3.3. Assay Performance with Clinical Specimens
Specimen | Our Taqman PCR Assay | Conventional PCR | Clothier et al. Taqman PCR Assay | |||
---|---|---|---|---|---|---|
Positive | Negative | Positive | Negative | Positive | Negative | |
Lung (n = 45) | 42 | 3 | 42 | 3 | 42 | 3 |
Milk (n = 78) | 15 | 63 | 15 | 63 | 15 | 63 |
Nasal swab (n = 78) | 22 | 56 | 22 | 56 | 22 | 56 |
Joint fluid (n = 5) | 2 | 3 | 2 | 3 | 2 | 3 |
Semen (n = 8) | 1 | 7 | 1 | 7 | 1 | 7 |
Total (n = 214) | 82 | 132 | 82 | 132 | 82 | 132 |
3.4. Performance Comparison of Culture and Taqman PCR Assay
Specimen | Culture | Our Taqman PCR Assay | ||
---|---|---|---|---|
Positive | Negative | Positive | Negative | |
Lung (n = 40) | 17 | 23 | 39 | 1 |
Milk(n = 18) | 4 | 14 | 4 | 14 |
Swabs(n = 10) | 4 | 6 | 6 | 4 |
Joint Fluid (n = 3) | 0 | 3 | 1 | 2 |
Total (n = 71) | 25 | 46 | 50 | 21 |
4. Conclusions
Acknowledgments
Author Contributions
Conflicts of Interest
References
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Naikare, H.; Bruno, D.; Mahapatra, D.; Reinisch, A.; Raleigh, R.; Sprowls, R. Development and Evaluation of a Novel Taqman Real-Time PCR Assay for Rapid Detection of Mycoplasma bovis: Comparison of Assay Performance with a Conventional PCR Assay and Another Taqman Real-Time PCR Assay. Vet. Sci. 2015, 2, 32-42. https://doi.org/10.3390/vetsci2010032
Naikare H, Bruno D, Mahapatra D, Reinisch A, Raleigh R, Sprowls R. Development and Evaluation of a Novel Taqman Real-Time PCR Assay for Rapid Detection of Mycoplasma bovis: Comparison of Assay Performance with a Conventional PCR Assay and Another Taqman Real-Time PCR Assay. Veterinary Sciences. 2015; 2(1):32-42. https://doi.org/10.3390/vetsci2010032
Chicago/Turabian StyleNaikare, Hemant, Daniela Bruno, Debabrata Mahapatra, Alesia Reinisch, Russell Raleigh, and Robert Sprowls. 2015. "Development and Evaluation of a Novel Taqman Real-Time PCR Assay for Rapid Detection of Mycoplasma bovis: Comparison of Assay Performance with a Conventional PCR Assay and Another Taqman Real-Time PCR Assay" Veterinary Sciences 2, no. 1: 32-42. https://doi.org/10.3390/vetsci2010032
APA StyleNaikare, H., Bruno, D., Mahapatra, D., Reinisch, A., Raleigh, R., & Sprowls, R. (2015). Development and Evaluation of a Novel Taqman Real-Time PCR Assay for Rapid Detection of Mycoplasma bovis: Comparison of Assay Performance with a Conventional PCR Assay and Another Taqman Real-Time PCR Assay. Veterinary Sciences, 2(1), 32-42. https://doi.org/10.3390/vetsci2010032