Cloning, Expression and Functional Study of OfCOR27 Gene in Osmanthus fragrans
Abstract
1. Introduction
2. Results
2.1. Identification and Phylogenetic Analysis of COR27 Gene Family in O. fragrans
2.2. Motif Identification, Gene Structure and Multiple Sequence Alignment Analysis
2.3. Analysis of Cis-Acting Regulatory Elements Within Promoter
2.4. Protein Structure Analysis
2.5. Subcellular Localization Analysis of OfCOR27
2.6. Expression Profiling of OfCOR27 Genes
2.6.1. Expression Across Flower Bud Developmental Stages
2.6.2. Quantification of Flowering-Related Gene Expression and Hormone Synthesis-Related Genes in OfCOR27-Overexpressing A. thaliana
2.6.3. Expression in the A. thaliana AtCOR27 Mutant
2.7. Phenotypic Effects of OfCOR27 Overexpression Transgenic Mutants and AtCOR27 Loss-of-Function Mutants
3. Discussion
3.1. Evolutionary Conservation and Gene Structure of OfCOR27 Gene Family
3.2. Nuclear Localization and Functional Implications of OfCOR27
3.3. Cis-Acting Elements and Hormone Signaling Within OfCOR27 Promoter
3.4. Organ-Specific Expression of OfCOR27 and Its Association with Cultivar-Specific Flowering Differences in O. fragrans
3.5. Functional Prospects and Future Research Directions of OfCOR27
4. Materials and Methods
4.1. Materials and Growth Conditions
4.2. Identification of COR27 Gene Family in O. fragrans
4.3. Phylogenetic Analysis of OfCOR27 Proteins
4.4. Protein Sequence and Conserved Motif Analysis of the OfCOR27 Gene Family
4.5. Prediction and Identification of Cis-Acting Regulatory Elements
4.6. Protein Structural Characterization and Bioinformatics Tools Analysis
4.7. Subcellular Localization Analysis
4.8. RNA Extraction and Quantitative Real-Time PCR (qRT-PCR)
4.9. Functional Verification of OfCOR27 Overexpression and Mutant Plants
4.9.1. Construction and Identification of Overexpression Vector
4.9.2. Screening and Identification of Transgenic A. thaliana
4.9.3. Identification of AtCOR27 Mutants
4.9.4. Comparison of Flowering Phenotypes and Gene Expression Between OfCOR27 Overexpression Lines and AtCOR27 Mutants
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Data Availability Statement
Acknowledgments
Conflicts of Interest
Abbreviations
| COR27 | COLD-REGULATED 27 |
| AtLFY | Arabidopsis thaliana LEAFY |
| AtFT | Arabidopsis thaliana FLOWERING LOCUS T |
| AtAP1 | Arabidopsis thaliana APETALA1 |
| AtFUL | Arabidopsis thaliana FRUITFULL |
| AtPHYB | Arabidopsis thaliana PHYTOCHROME B |
| AtIAR3 | Arabidopsis thaliana IAA-ALANINE RESISTANT 3 |
| AtACS5 | Arabidopsis thaliana 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID SYNTHASE 5 |
| AtILR1 | Arabidopsis thaliana IAA-LEUCINE RESISTANT 1 |
References
- Willemen, L.; Verburg, P.H.; Hein, L.; van Mensvoort, M.E. Spatial characterization of landscape functions. Landsc. Urban Plan. 2008, 88, 34–43. [Google Scholar] [CrossRef]
- Zhang, S.; Gottschalk, C.; van Nocker, S. Genetic mechanisms in the repression of flowering by gibberellins in apple (Malus x domestica Borkh.). BMC Genom. 2019, 20, 747. [Google Scholar] [CrossRef]
- Fornara, F.; de Montaigu, A.; Coupland, G. SnapShot: Control of flowering in Arabidopsis. Cell 2010, 141, 550.e1–550.e2. [Google Scholar] [CrossRef]
- Airoldi, C.A.; McKay, M.; Davies, B. MAF2 is regulated by temperature-dependent splicing and represses flowering at low temperatures in parallel with FLM. PLoS ONE 2015, 10, e0126516. [Google Scholar] [CrossRef]
- Su, Q.; Chen, L.; Cai, Y.; Chen, Y.; Yuan, S.; Li, M.; Zhang, J.; Sun, S.; Han, T.; Hou, W. Functional redundancy of FLOWERING LOCUS T 3b in soybean flowering time regulation. Int. J. Mol. Sci. 2022, 23, 2497. [Google Scholar] [CrossRef]
- Fowler, S.; Thomashow, M.F. Arabidopsis transcriptome profiling indicates that multiple regulatory pathways are activated during cold acclimation in addition to the CBF cold response pathway. Plant Cell 2002, 14, 1675–1690. [Google Scholar] [CrossRef] [PubMed]
- Mikkelsen, M.D.; Thomashow, M.F. A role for circadian evening elements in cold-regulated gene expression in Arabidopsis. Plant J. 2009, 60, 328–339. [Google Scholar] [CrossRef] [PubMed]
- Fan, G.T.; Sun, X.M.; Ren, X.D.; Li, S.H.; Xin, H.P.; Wang, W.J. Cloning and functional analysis of COR27 from Vitis vinifera. Plant Sci. J. 2015, 33, 346–354. [Google Scholar] [CrossRef]
- Li, X.; Ma, D.; Lu, S.X.; Hu, X.; Huang, R.; Liang, T.; Xu, T.; Tobin, E.M.; Liu, H. Blue light-and low temperature-regulated COR27 and COR28 play roles in the Arabidopsis circadian clock. Plant Cell 2016, 28, 2755–2769. [Google Scholar] [CrossRef] [PubMed]
- Wang, P.; Cui, X.; Zhao, C.; Shi, L.; Zhang, G.; Sun, F.; Cao, X.; Yuan, L.; Xie, Q.; Xu, X. COR27 and COR28 encode nighttime repressors integrating Arabidopsis circadian clock and cold response. J. Integr. Plant Biol. 2017, 59, 78–85. [Google Scholar] [CrossRef]
- Zhu, W.; Zhou, H.; Lin, F.; Zhao, X.; Jiang, Y.; Xu, D.; Deng, X.W. COLD-REGULATED GENE27 Integrates Signals from Light and the Circadian Clock to Promote Hypocotyl Growth in Arabidopsis. Plant Cell 2020, 32, 3155–3169. [Google Scholar] [CrossRef] [PubMed]
- Li, X.; Liu, C.; Zhao, Z.; Ma, D.; Zhang, J.; Yang, Y.; Liu, Y.; Liu, H. COR27 and COR28 are novel regulators of the COP1–HY5 regulatory hub and photomorphogenesis in Arabidopsis. Plant Cell 2020, 32, 3139–3154. [Google Scholar] [CrossRef] [PubMed]
- Kahle, N.; Sheerin, D.J.; Fischbach, P.; Koch, L.A.; Schwenk, P.; Lambert, D.; Rodriguez, R.; Kerner, K.; Hoecker, U.; Zurbriggen, M.D.; et al. COLD REGULATED 27 and 28 are targets of CONSTITUTIVELY PHOTOMORPHOGENIC 1 and negatively affect phytochrome B signalling. Plant J. 2020, 104, 1038–1053. [Google Scholar] [CrossRef]
- Suárez-López, P.; Wheatley, K.; Robson, F.; Onouchi, H.; Valverde, F.; Coupland, G. CONSTANS mediates between the circadian clock and the control of flowering in Arabidopsis. Nature 2001, 410, 1116–1120. [Google Scholar] [CrossRef]
- Edwards, K.D.; Anderson, P.E.; Hall, A.; Salathia, N.S.; Locke, J.C.; Lynn, J.R.; Straume, M.; Smith, J.Q.; Millar, A.J. FLOWERING LOCUS C mediates natural variation in the high-temperature response of the Arabidopsis circadian clock. Plant Cell 2006, 18, 639–650. [Google Scholar] [CrossRef] [PubMed]
- Luo, M.; Liu, X.; Su, H.; Li, M.; Li, M.; Wei, J. Regulatory networks of flowering genes in Angelica sinensis during vernalization. Plants 2022, 11, 1355. [Google Scholar] [CrossRef]
- Zhang, Q. Transcriptional Regulation Analysis of Caotenoidmetabolism Pathway and Functional Study OfNCED3 Gene in Osmanthus fragran. Master’s Thesis, Henan Agricultural University, Zhengzhou, China, 2022. [Google Scholar]
- Lei, R.H.; Yu, X.L.; Wang, L.Q. Research on the Introduction of Osmanthus fragrans Community in China. Anhui Agric. Sci. 2008, 36, 2337, 2354. [Google Scholar] [CrossRef]
- Wang, Y.G.; Luo, Y.B.; Zhang, C.; Fu, J.X.; Hu, S.Q.; Zhao, H.B. Flower Color and Pigment Composition in the Petals of Bud Mutation and its Stock Plant of Osmanthus fragrans ‘Jingui’. Acta Hortic. Sin. 2017, 44, 528–536. [Google Scholar] [CrossRef]
- Goodwin, T.W.; Britton, G. Distribution and Analysis of Carotenoids; CABI Digital Library: Wallingford, UK, 1988; pp. 61–132. Available online: https://www.cabidigitallibrary.org/ (accessed on 18 July 2025).
- Han, Y.; Wang, X.; Chen, W.; Dong, M.; Yuan, W.; Liu, X.; Shang, F. Differential expression of carotenoid-related genes determines diversified carotenoid coloration in flower petal of Osmanthus fragrans. Tree Genet. Genomes 2014, 10, 329–338. [Google Scholar] [CrossRef]
- Han, Y.; Lu, L.; Dong, M.; Yuan, W.; Shang, F. cDNA cloning of the phytoene synthase (PSY) and expression analysis of PSY and carotenoid cleavage dioxygenase genes in Osmanthus fragrans. Biologia 2013, 68, 258–263. [Google Scholar] [CrossRef]
- Wang, H.Y. The Research on Effects of ERF2 Transcription Factor Regulates Expression of CCD1 and CCD4 Genes in Osmanthus fragrans. Master’s Thesis, Henan University, Zhengzhou, China, 2019. [Google Scholar]
- Gu, H.; Yang, X.L.; Wang, L.G. Research progress on molecular biology of Osmanthus fragrans. Trop. Subtrop. Bot. 2025, 33, 220–228. [Google Scholar]
- Li, L.; Pang, T.H.; Fu, J.X.; Zhang, C. Screening and identification of ERF transcription factors of B2 subgroup involved in regulating lycopene β-cyclase gene LCYB in Osmanthus fragrans. J. Zhejiang A&F Univ. 2025, 42, 86–93. [Google Scholar]
- Kardailsky, I.; Shukla, V.K.; Ahn, J.H.; Dagenais, N.; Christensen, S.K.; Nguyen, J.T.; Chory, J.; Harrison, M.J.; Weigel, D. Activation Tagging of the Floral Inducer FT. Science 1999, 286, 1962–1965. [Google Scholar] [CrossRef]
- Weigel, D.; Alvarez, J.; Smyth, D.R.; Yanofsky, M.F.; Meyerowitz, E.M. LEAFY controls floral meristem identity in Arabidopsis. Cell 1992, 69, 843–859. [Google Scholar] [CrossRef] [PubMed]
- Lee, J.H.; Yoo, S.J.; Park, S.H.; Hwang, I.; Lee, J.S.; Ahn, J.H. Role of SVP in the control of flowering time by ambient temperature in Arabidopsis. Genes Dev. 2007, 21, 397–402. [Google Scholar] [CrossRef]
- Mitchum, M.G.; Yamaguchi, S.; Hanada, A.; Kuwahara, A.; Yoshioka, Y.; Kato, T.; Sun, T.P. Distinct and overlapping roles of two gibberellin 3-oxidases in Arabidopsis development. Plant J. 2006, 45, 804–818. [Google Scholar] [CrossRef] [PubMed]
- Zhu, L.; Zhang, Y.; Zhang, W.; Yang, S.; Chen, J.Q.; Tian, D. Patterns of exon-intron architecture variation of genes in eukaryotic genomes. BMC Genom. 2009, 10, 47. [Google Scholar] [CrossRef]
- Yuan, S.P.; Zhang, F.G.; Huang, Q.; Cheng, X.; Gao, G.Z.; Wu, X.M. Bioinformatics of COR413 family genes in Brassica napus and its diploid ancestral species. Chin. J. Oil Crop Sci. 2019, 41, 507. [Google Scholar]
- Seo, M.; Lee, J.Y. Dissection of Functional Modules of AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 4 in the Development of the Root Xylem. Front. Plant Sci. 2021, 12, 632078. [Google Scholar] [CrossRef]
- Zhou, Y.; Zhang, X.; Chen, J.; Guo, X.; Wang, H.; Zhen, W.; Zhang, J.; Hu, Z.; Zhang, X.; Botella, J.R.; et al. Overexpression of AHL9 accelerates leaf senescence in Arabidopsis thaliana. BMC Plant Biol. 2022, 22, 248. [Google Scholar] [CrossRef] [PubMed]
- Yan, S.B.; Jin, G.; Guo, R.; Liao, R.Y.; Zhou, P.; Yang, L. Effects of gibberellin on phenological period of Prunus persica var. duplex. South China Fruits 2017, 46, 91–93. [Google Scholar] [CrossRef]
- Tang, D.; Wen, T.J.; Lu, L.; Chang, X.; Hu, J.F. Effects of gibberellin treatment on flowering-time of ‘Fenghou’ grapevine (Vitis vinifera) and its molecular mechanisms. Chin. J. Agric. Univ. 2015, 20, 92–98. [Google Scholar] [CrossRef]
- Shi, J.B.; Wang, N.; Zhou, H.; Xu, Q.H.; Qiao, W.Q.; Yan, G.T. The temporal spatial expression of gibberell in key metabolic enzyme in Parthenocissus tricuspidata. North China J. Agric. Sci. 2018, 33, 9–16. [Google Scholar]
- Ruan, Y.H.; Dong, S.K.; Liu, L.J.; Sun, C.S.; Wang, L.B.; Guo, X.X.; Gai, Z.J. Effects of exogenous abscisic acid on physiological characteristics in soybean flowering under drought stress. Soybean Sci. 2012, 31, 385–388. [Google Scholar]
- Ren, H.X.; Chen, X.; Zhao, X.J.; Wang, Y.F. Effects of low nitrogen and salicylic acid on flower bud differentiation in cotyledon culture of Cucumis sativus. J. Hortic. Sci. 1999, 26, 105–109. [Google Scholar]
- Liu, Y.Y.; Yu, F.M.; Li, N. Effects of salicylic acid and boric acid treatments on growth and development of Freesia spp. Hebei Voc.-Tech. Norm. Coll. 2002, 16, 15–17+44. [Google Scholar] [CrossRef]
- Wang, Y.H.; Fan, C.H.; Shen, X.; Qu, G.M.; Shi, J.D. Changes in endogenous hormone contents during flower bud differentiation of Prunus avium. Acta Agric. Boreali-Occident. Sin. 2002, 11, 64–67. [Google Scholar]
- Li, T.H.; Huang, W.D.; Meng, Z.Q. Exploration on the mechanism of flower bud induction in Malus domestica. Plant Physiol. J. 1996, 22, 251–257. [Google Scholar]
- Shi, J.K.; Zhang, W.P.; Fan, W.G.; Wen, X.P. Changes in endogenous hormone contents during female flower bud differentiation of Ginkgo biloba. J. Hortic. Sci. 1999, 26, 194–195. [Google Scholar]
- Gui, R.Y.; Cao, F.L.; Shen, H.J.; Xie, Y.F. Effects of polyamine metabolism on endogenous hormone contents during flowering of Dianthus caryophyllus. J. Nanjing For. Univ. (Nat. Sci. Ed.) 2003, 27, 27–30. [Google Scholar]
- Jia, H.J.; Zheng, H.M.; Huang, S.K. Changes in endogenous hormones during flower bud differentiation of potted Lagerstroemia indica. Plant Physiol. Commun. 1993, 29, 39–41. [Google Scholar]
- Wang, Q.; Gao, G.; Chen, X.; Liu, X.; Dong, B.; Wang, Y.; Zhong, S.; Deng, J.; Fang, Q.; Zhao, H. Genetic studies on continuous flowering in woody plant Osmanthus fragrans. Front Plant Sci. 2022, 13, 1049479. [Google Scholar] [CrossRef]
- Wu, H.F.; Zhou, M.S.; Zhu, S.K.; Yang, L.Y.; Zhao, H.B.; Dong, B. Cloning of OfSPLs genes in Osmanthus fragrans and their expression analysis during flower bud differentiation under different temperatures. J. Agric. Biotechnol. 2020, 28, 1390–1399. [Google Scholar]
- Lin, X.X. Research of LecRK-VIII.2-Mediated Involved in Hypocotyl Growth and Flowering Time in Arabidopsis thaliana. Master’s Thesis, Hunan University, Changsha, China, 2020. [Google Scholar]
- Lu, T.; Wang, Y.G.; Luo, Y.B.; Zhang, C.; Fu, J.X.; Dong, B.; Hu, S.Q.; Zhao, H.B. Comparison on flower bud differentiation and development of different seasons in Osmanthus fragrans ‘Sijigui’. Acta Hortic. Sin. 2017, 44, 1145. [Google Scholar] [CrossRef]
- Dong, L.G.; Wang, X.R.; Ding, Y.L. Study on flowering phenology of Osmanthus fragrans. J. Nanjing For. Univ. (Nat. Sci. Ed.) 2014, 2014, 51–56. [Google Scholar]
- Chen, C.; Chen, H.; Zhang, Y.; Thomas, H.R.; Frank, M.H.; He, Y.; Xia, R. TBtools: An integrative toolkit developed for interactive analyses of big biological data. Mol. Plant 2020, 13, 1194–1202. [Google Scholar] [CrossRef]
- Li, Y.J.; Gao, K. An improved neighbor-joining method and its applications. J. Beijing Univ. Technol. 2009, 35, 283–288. [Google Scholar]
- Hu, B.; Jin, J.; Guo, A.Y.; Zhang, H.; Luo, J.; Gao, G. GSDS 2.0: An upgraded gene feature visualization server. Bioinformatics 2015, 31, 1296–1297. [Google Scholar] [CrossRef] [PubMed]
- Bailey, T.L.; Elkan, C. Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc. Int. Conf. Intell. Syst. Mol. Biol. 1994, 2, 28–36. [Google Scholar] [PubMed]
- Luo, J.C. Practical teaching examples of biological information technology course. Biotechnol. Bull. 2015, 31, 102–111. [Google Scholar] [CrossRef]
- Schneider, M.; Tognolli, M.; Bairoch, A. The Swiss-Prot protein knowledgebase and ExPASy: Providing the plant community with high quality proteomic data and tools. Plant Physiol. Biochem. 2004, 42, 1013–1021. [Google Scholar] [CrossRef] [PubMed]
- Guex, N.; Peitsch, M.C. SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling. Electrophoresis 1997, 18, 2714–2723. [Google Scholar] [CrossRef] [PubMed]
- Czechowski, T.; Stitt, M.; Altmann, T.; Udvardi, M.K.; Scheible, W.R. Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis thaliana. Plant Physiol. 2005, 139, 5–17. [Google Scholar] [CrossRef] [PubMed]






Disclaimer/Publisher’s Note: The statements, opinions and data contained in all publications are solely those of the individual author(s) and contributor(s) and not of MDPI and/or the editor(s). MDPI and/or the editor(s) disclaim responsibility for any injury to people or property resulting from any ideas, methods, instructions or products referred to in the content. |
© 2026 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license.
Share and Cite
Chen, R.; Li, J.; Li, S.; Zhang, D.; Zhang, M.; Duan, Y. Cloning, Expression and Functional Study of OfCOR27 Gene in Osmanthus fragrans. Plants 2026, 15, 610. https://doi.org/10.3390/plants15040610
Chen R, Li J, Li S, Zhang D, Zhang M, Duan Y. Cloning, Expression and Functional Study of OfCOR27 Gene in Osmanthus fragrans. Plants. 2026; 15(4):610. https://doi.org/10.3390/plants15040610
Chicago/Turabian StyleChen, Ruiqi, Jinfeng Li, Shenglian Li, Daowu Zhang, Min Zhang, and Yifan Duan. 2026. "Cloning, Expression and Functional Study of OfCOR27 Gene in Osmanthus fragrans" Plants 15, no. 4: 610. https://doi.org/10.3390/plants15040610
APA StyleChen, R., Li, J., Li, S., Zhang, D., Zhang, M., & Duan, Y. (2026). Cloning, Expression and Functional Study of OfCOR27 Gene in Osmanthus fragrans. Plants, 15(4), 610. https://doi.org/10.3390/plants15040610

