Conservation and Divergence of Phosphoenolpyruvate Carboxylase Gene Family in Cotton
Abstract
:1. Introduction
2. Methods and Materials
2.1. Collection of Genome Sequences
2.2. Genetic Identification, Multiple Sequence Alignment and Phylogenetic Analysis
2.3. Conserved Motif, Exon-Intron Structure and Promoter Analysis
2.4. Chromosomal Distribution and Subcellular Localization
2.5. Gene Duplication, Collinearity Analysis and Selection Pressure Analysis
2.6. Plant Materials and Stress Treatments
2.7. Gene Expression Patterns of the PEPC Gene Family
3. Results
3.1. Genome-Wide Identification and Biophysical Characteristics of the PEPCs
3.2. Phylogenetic Analysis of the PEPC Gene Family
3.3. Conserved Motif, Gene Structure and Promoter Analysis
3.4. Chromosomal Distribution and Gene Duplications of Cotton PEPC Family
3.5. Temporal and Spatial Expression of PEPC Genes in Cotton
3.6. Abiotic Stress-Induced Aberrant Expression of PEPC Genes
4. Discussion
4.1. Conservation and Divergence of PEPC Genes in Cotton
4.2. Temporal and Spatial Expression of PEPC Genes Indicates Their Specific Function in Different Biological Processes
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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Wei, Y.; Li, Z.; Wedegaertner, T.C.; Jaconis, S.; Wan, S.; Zhao, Z.; Liu, Z.; Liu, Y.; Zheng, J.; Hake, K.D.; et al. Conservation and Divergence of Phosphoenolpyruvate Carboxylase Gene Family in Cotton. Plants 2022, 11, 1482. https://doi.org/10.3390/plants11111482
Wei Y, Li Z, Wedegaertner TC, Jaconis S, Wan S, Zhao Z, Liu Z, Liu Y, Zheng J, Hake KD, et al. Conservation and Divergence of Phosphoenolpyruvate Carboxylase Gene Family in Cotton. Plants. 2022; 11(11):1482. https://doi.org/10.3390/plants11111482
Chicago/Turabian StyleWei, Yangyang, Zhaoguo Li, Tom C. Wedegaertner, Susan Jaconis, Sumei Wan, Zilin Zhao, Zhen Liu, Yuling Liu, Juyun Zheng, Kater D. Hake, and et al. 2022. "Conservation and Divergence of Phosphoenolpyruvate Carboxylase Gene Family in Cotton" Plants 11, no. 11: 1482. https://doi.org/10.3390/plants11111482