Daily Rhythmicity of Muscle-Related and Rhythm Genes Expression in Mackerel Tuna (Euthynnus affinis)
Abstract
:Simple Summary
Abstract
1. Introduction
2. Materials and Methods
2.1. Animal
2.2. Sampling Procedures
2.3. RNA Extraction and Reverse Transcription
2.4. Gene Expression Analyses
2.5. Statistics
3. Results
3.1. Analysis of the Rhythmicity of the Muscle Colck Gene in Mackerel Tuna
3.1.1. Rhythmical Analysis of the White Muscle Clock Gene
3.1.2. Rhythmical Analysis of the Red Muscle Clock Gene
3.2. Functional Genes Expression Levels in Mackerel Tuna Muscles
3.2.1. Functional Genes Expression Levels in White Muscle
3.2.2. Functional Genes Expression Levels in Red Muscle
4. Discussion
4.1. Muscle Rhythm Gene Expression in Mackerel Tuna
4.2. Functional Gene Expression in Mackerel Tuna Muscle
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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Genes | Weather | Acro (p-Value) | Acrophase |
---|---|---|---|
CREB1 | S | <0.001 | 12 ± 0.82 |
C | <0.001 | 6 ± 0.85 | |
PER1 | S | <0.001 | 0 ± 1.00 |
C | <0.02 | 18 ± 1.20 | |
PER3 | S | n.s. | n/a |
C | n.s. | n/a | |
RORA | S | n.s. | n/a |
C | n.s. | n/a | |
REVERBA | S | <0.005 | 12 ± 0.98 |
C | <0.001 | 12 ± 0.83 | |
CRY1 | S | <0.001 | 6 ± 0.86 |
C | <0.001 | 6 ± 0.83 | |
CRY2 | S | <0.005 | 18 ± 1.03 |
C | n.s. | n/a | |
BMAL1 | S | n.s. | n/a |
C | <0.001 | 6 ± 0.86 |
Genes | Weather | Acro (p-Value) | Acrophase |
---|---|---|---|
CREB1 | S | <0.01 | 12 ± 1.07 |
C | n.s. | n/a | |
PER1 | S | <0.001 | 18 ± 0.53 |
C | <0.001 | 0 ± 0.56 | |
PER3 | S | <0.001 | 12 ± 0.68 |
C | <0.05 | 6 ± 1.33 | |
RORA | S | <0.005 | 6 ± 1.04 |
C | <0.001 | 6 ± 0.76 | |
REVERBA | S | n.s. | n/a |
C | <0.02 | 12 ± 1.17 | |
CRY1 | S | <0.001 | 12 ± 0.31 |
C | n.s. | n/a | |
CRY2 | S | <0.001 | 12 ± 0.69 |
C | <0.05 | 12 ± 1.17 | |
BMAL1 | S | <0.001 | 12 ± 0.66 |
C | n.s. | n/a |
Genes | Weather | Acro (p-Value) | Acrophase |
---|---|---|---|
TRIM25 | S | n.s. | n/a |
C | <0.001 | 12 ± 0.93 | |
STAT3 | S | <0.05 | 0 ± 1.29 |
C | n.s. | n/a | |
MBNL | S | <0.02 | 18 ± 1.16 |
C | n.s. | n/a | |
MSTN | S | n.s. | n/a |
C | <0.02 | 12 ± 1.19 |
Genes | Weather | Acro (p-Value) | Acrophase |
---|---|---|---|
TRIM25 | S | n.s. | n/a |
C | n.s. | n/a | |
STAT3 | S | <0.001 | 18 ± 0.67 |
C | n.s. | n/a | |
MBNL | S | n.s. | n/a |
C | n.s. | n/a | |
MSTN | S | <0.02 | 12 ± 1.2 |
C | n.s. | n/a |
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Wang, W.; Dai, S.; Liu, L.; Fu, Z.; Yang, R.; Yu, G.; Ma, Z.; Zong, H. Daily Rhythmicity of Muscle-Related and Rhythm Genes Expression in Mackerel Tuna (Euthynnus affinis). Biology 2023, 12, 1211. https://doi.org/10.3390/biology12091211
Wang W, Dai S, Liu L, Fu Z, Yang R, Yu G, Ma Z, Zong H. Daily Rhythmicity of Muscle-Related and Rhythm Genes Expression in Mackerel Tuna (Euthynnus affinis). Biology. 2023; 12(9):1211. https://doi.org/10.3390/biology12091211
Chicago/Turabian StyleWang, Wenwen, Shiming Dai, Longlong Liu, Zhengyi Fu, Rui Yang, Gang Yu, Zhenhua Ma, and Humin Zong. 2023. "Daily Rhythmicity of Muscle-Related and Rhythm Genes Expression in Mackerel Tuna (Euthynnus affinis)" Biology 12, no. 9: 1211. https://doi.org/10.3390/biology12091211
APA StyleWang, W., Dai, S., Liu, L., Fu, Z., Yang, R., Yu, G., Ma, Z., & Zong, H. (2023). Daily Rhythmicity of Muscle-Related and Rhythm Genes Expression in Mackerel Tuna (Euthynnus affinis). Biology, 12(9), 1211. https://doi.org/10.3390/biology12091211