Morphological and Molecular Characterization of Five Species Including Three New Species of Golden Gorgonians (Cnidaria: Octocorallia) from Seamounts in the Western Pacific
Abstract
:Simple Summary
Abstract
1. Introduction
2. Materials and Methods
2.1. Specimen Collection and Morphological Examination
2.2. DNA Extraction and Sequencing
2.3. Genetic Distance and Phylogenetic Analyses
Species | Voucher Number | Locatiom | References | GenBank Accession Numbers | ||
---|---|---|---|---|---|---|
mtMutS | COI | 28S rDNA | ||||
Iridogorgia densispiralis sp. nov. | MBM286454 | 10.37° N, 140.30° E | present study | MW841033 | MW841036 | MW841043 |
Iridogorgia flexilis sp. nov. | MBM286453 | 10.40° N, 140.90° E | present study | MW841031 | MW841035 | MW841041 |
Iridogorgia verrucosa sp. nov. | MBM286455 | 10.37° N, 140.04° E | present study | MW841034 | MW840138 | MW841044 |
Iridogorgia densispicula | MBM286538 | 10.35° N, 140.07° E | [7] | MK431864 | MW841037 | MW841040 |
Iridogorgia magnispiralis | MBM286450 | 10.50° N, 140.11° E | present study | MW841032 | MW841039 | MW841042 |
Iridogorgia squarrosa | MBM286539 | 11.16° N, 139.25° E | [7] | MK431865 | – | – |
Iridogorgia fontinalis | YPM 38584 | 34.81° N, 50.50° W | [6] | EU293802 | GQ868321 | – |
Iridogorgia magnispiralis | YPM: IZ: 38580 | – | France, unpublished | DQ860108 | – | – |
Iridogorgia magnispiralis | MNHN-Oct.0000-0576 | 38.47° N, 27.9° W | [6] | GQ353316 | – | – |
Iridogorgia magnispiralis | – | 38.78° N, 63.96° W | [6] | EU268055 | – | – |
Iridogorgia magnispiralis | – | unknown | France & Pante, unpublished | – | FJ268639 | – |
Iridogorgia magnispiralis | YPM 38580 | 38.78° N, 63.96° W | [6] | JN227997 | – | – |
Iridogorgia magnispiralis | – | 35.19° N, 47.68° W | [6] | GQ223116 | GQ868318 | – |
Iridogorgia magnispiralis | YPM 38581 | 38.26° N, 60.55° W | [6] | GQ180141 | – | – |
Iridogorgia magnispiralis | USNM 1092265 | 34.58° N, 56.84° W | [6] | GQ180142 | – | – |
Iridogorgia magnispiralis | YPM 38582 | 38.86° N, 63.91° W | [6] | GQ180140 | – | – |
Iridogorgia magnispiralis | – | Gulf of Mexico | [28,29] | KC788263 | KC788237 | KX890214 |
Iridogorgia sp. | – | 21.32° N, 157.02° W | [6] | GQ868342 | GQ868323 | – |
Iridogorgia sp. | YPM 28866 | 33.79° N, 62.59° W | [6] | DQ297422 | – | – |
Iridogorgia sp. type C | – | 23.05° N, 163.16° W | [6] | JN227919 | – | – |
Iridogorgia sp. type A | MNHN-IC.2009-0001 | 9.15° S, 158.27° E | [6] | GQ180145 | – | – |
Iridogorgia splendens | YPM 35397, 38586 | 38.85° N, 63.76° W | [6] | DQ860109 | – | – |
Iridogorgia splendens | USNM 1092267 | 38.79° N, 64.13° W | [6] | JN227996 | GQ868313 | – |
Iridogorgia splendens | YPM 38585 | 37.46° N, 59.95° W | [6] | JN228005 | GQ868330 | – |
Iridogorgia splendens | – | Gulf of Mexico | [28] | KC788271 | KC788229 | – |
Iridogorgia splendens | – | Gulf of Mexico | [29] | – | – | KX890215 |
Iridogorgia splendens | USNM 1092267 | Kelvin Seamount, NW Atlantic | [30] | GQ180143 | – | – |
Iridogorgia splendens | YPM: IZ: 38585 | 37.46° N, 59.95° W | [30] | GQ180144 | – | – |
Rhodaniridogorgia fragilis | YPM 38588 | 34.46° N, 56.73° W | [6] | JN228000 | JN227954 | – |
Chrysogorgia averta | – | Gulf of Mexico | [28] | KC788265 | KC788235 | KC788258 |
Chrysogorgia sp. | – | Gulf of Mexico | [28] | KC788268 | KC788223 | KC788240 |
Chrysogorgia sp. | – | Gulf of Mexico | [29] | – | – | KX890212 |
Pseudochrysogorgia bellona | MNHN-IC.2008-007 Paratype | 21.12° S, 158.5° E | [6] | GQ868332 | GQ868310 | – |
Pseudochrysogorgia sp. | XMUB7697 | 15.52° N, 110.96° E | [31] | – | – | MW336977 |
Metallogorgia melanotrichos | – | 34.53° N, 47.79° W | [6] | GQ180158 | FJ268633 | – |
Metallogorgia macrospina | NIWA15642 | 37.21° S, 177.24° E | [6] | JN228001 | JN227952 | – |
Radicipes stonei | USNM: IZ:1418007 | Alaska | [32] | MG986912 | MG986961 | MG980134 |
Stephanogorgia faulkneri | NTM C014927 | 7.19° N, 134.32° E | [6] | GQ342485 | GQ342406 | JX203718 |
Chrysogorgiidae sp. | – | 41.37° S, 42.85° E | [33] | KP324387 | KP678004 | KP324611 |
Plexaura kuna | RMNH Coel.40836 | South Africa | [34] | JX203807 | JX203866 | JX203748 |
3. Results
3.1. Systematics
3.2. Genetic Distance and Phylogenetic Analyses
4. Discussion
5. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Characters/Species | I. densispicula | I. squarrosa | I. bella | I. fontinalis | I. magnispiralis |
Each turn height (cm) | 13–18 | 13–15 | – | 4 | 12–20 |
Helical diameter (cm) | 3–4 | 4–5 | – | 2.5 | 1–9 |
Branch intervals (mm) | 3–4 | 3–4 | 4 | 1–2 | 2–5 |
Polyp height and width (mm) | 2–4/2–4 | 2–4/1–2 | – | 1 mm from branch to tentacle base | 1–3/2–3 |
Polyp intervals (mm) | 2–7 | 2–6 | 7 | 5–9 | 2–7 |
Verrucae | rare | a few | sparse | abundant | abundant |
Sclerites in coenenchyme (μm) | spindles usually with two sharp ends: 203–967 × 11–65 | spindles usually with two sharp ends: 180–840 × 23–60 | – | spindles and a few scales: 397–1024 × 25–74 | spindles usually with two sharp ends: 322–1032 × 21–81 |
Sclerites in polyp bodies (μm) | spindles and scales coarse, usually lobed with irregular shape and rugged and ridged surface in the upper part, and regular and flat in the basal part: 80–627 × 14–110 | scales with coarse surface and various shape: 72–569 × 24–150 | needle-like or bar-shaped | rods: 175–482 × 27–50 | spindles thick and slender, nearly smooth or with many fine warts: 224–383 × 23–57 |
Sclerites in tentacles (μm) | rods: 137–945 × 11–98 | rods: 325–433 × 26–43 scales: 467–805 × 48–66 | needle-like or bar-shaped | shorter rods than bodies | rods: 157–548 × 18–78 |
Distribution | Western Pacific | Western Pacific | near Hawaii | North Atlantic | North Atlantic, near Hawaii, Western Pacific |
References | [7], present study | [7] | [6,7,11,13] | [4] | [4,8,11,14], present study |
continued | |||||
Characters/Species | I. pourtalesii | I. splendens | I. flexilis sp. nov. | I. densispiralis sp. nov. | I. verrucosa sp. nov. |
Each turn height (cm) | – | 5 | 13–15 | 2.5–3.0 | 3–4 |
Helical diameter (cm) | – | 1–2 | 3–4 | 0.5 | 1 |
Branch intervals (mm) | 3–6 | 3–4 | 3 | 2–3 | 1–3 |
Polyp height and width (mm) | – | less than 1 mm from branch to tentacle base | 1–3/2–4 | 1–2/1–3 | 2/1–2 |
Polyp intervals (mm) | 5 | 6–8.5 | 4–6 | 3–9 | 4–6 |
Verrucae | numerous | numerous | rare | a few | numerous |
Sclerites in coenenchyme (μm) | lacking in the inter- polyps | scales and spindles under polyps; absent to rare in the inter-polyps: 274–592 × 24–51 | spindles usually with two rounded ends: 322–892 × 25–72 | rods and spindles usually with two rounded ends, sometimes sparse in the inter-polyps: 90–523 × 19–65 | spindles same as the body wall, usually with two rounded ends: 169–438 × 19–62 |
Sclerites in polyp bodies (μm) | spindles smooth: average 400 | scales with a constriction midway: 143–268 × 29–45 | spindles and scales stout and thick with nearly smooth surface: 172–679 × 27–219 | spindles, rods and a few elongated scales often thick with sparse and fine warts: 84–347 × 18–60 | spindles and elongated scales with sparse and fine warts and irregular edges: 116–450 × 21–65 |
Sclerites in tentacles (μm) | sparse rods: 200–900 | few rods: 169–274 × 27–39 | rods: 261–532 × 19–58 | rods: 95–442 × 11–52 | rods: 160–459 × 17–73 |
Distribution | North Atlantic | North Atlantic | Western Pacific | Western Pacific | Western Pacific |
References | [4,10,11] | [4,6,11] | present study | present study | present study |
1 | 2 | 3 | 4 | 5 | 6 | 7 | ||
---|---|---|---|---|---|---|---|---|
1 | Iridogorgia densispiralis sp. nov. MW841043 | - | 1.17% | 0.31% | 3.48% | 1.64% | - | - |
2 | Iridogorgia flexilis sp. nov. MW841041 | 2.30% | - | 1.09% | 2.76% | 0.46% | - | - |
3 | Iridogorgia verrucosa sp. nov. MW841044 | 0.65% | 2.13% | - | 3.40% | 1.56% | - | - |
4 | Iridogorgia densispicula MW841040 | 6.08% | 4.68% | 5.90% | - | 3.24% | - | - |
5 | Iridogorgia magnispiralis MW841042 | 2.97% | 0.65% | 2.80% | 5.37% | - | - | - |
6 | Iridogorgia magnispiralis KX890214 | 3.30% | 0.98% | 3.13% | 5.54% | 0.32% | - | - |
7 | Iridogorgia splendens KX890215 | 0.32% | 2.30% | 0.98% | 5.72% | 2.97% | 3.30% | - |
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | ||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | Iridogorgia densispiralissp. nov. MW841033 | - | ||||||||||||
2 | I. verrucosasp. nov. MW841034 | 0.00% | - | |||||||||||
3 | I. densispicula MK431864 | 1.11% | 1.11% | - | ||||||||||
4 | I. flexilissp. nov. MW841031 | 0.15% | 0.15% | 0.95% | - | |||||||||
5 | I. splendens DQ860109, JN227996, JN228005, KC788271, GQ180143 | 0.16% | 0.16% | 0.95% | 0.00% | 0.00% | ||||||||
6 | I. splendens GQ180144 | 0.47% | 0.47% | 1.33% | 0.32% | 0.33% | - | |||||||
7 | I. squarrosa MK431865 | 0.32% | 0.32% | 1.11% | 0.16% | 0.16% | 0.49% | - | ||||||
8 | I. fontinalis EU293802 | 0.48% | 0.48% | 1.27% | 0.32% | 0.32% | 0.66% | 0.48% | - | |||||
9 | I. magnispiralisMW841032 DQ860108, GQ353316, EU268055, JN227997, GQ223116, GQ180141, GQ180142, GQ180140, KC788263 | 0.47% | 0.47% | 1.27% | 0.32% | 0.32% | 0.66% | 0.47% | 0.00% | 0.00% | ||||
10 | Iridogorgia sp. JN227919 | 0.00% | 0.00% | 1.11% | 0.15% | 0.16% | 0.47% | 0.32% | 0.48% | 0.47% | - | |||
11 | Iridogorgia sp. GQ868342 | 0.30% | 0.30% | 1.11% | 0.15% | 0.16% | 0.47% | 0.00% | 0.48% | 0.47% | 0.30% | - | ||
12 | Iridogorgia sp. DQ297422, GQ180145 | 0.46% | 0.46% | 1.27% | 0.30% | 0.32% | 0.63% | 0.47% | 0.00% | 0.00% | 0.46% | 0.46% | 0.00% | |
13 | Rhodaniridogorgia fragilis JN228000 | 0.70% | 0.70% | 1.41% | 0.47% | 0.47% | 0.70% | 0.93% | 0.93% | 0.93% | 0.70% | 0.70% | 0.93% | - |
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | ||
---|---|---|---|---|---|---|---|---|---|---|
1 | Iridogorgia densispiralis sp. nov. MW841036 | - | ||||||||
2 | Iridogorgia verrucosa sp. nov. MW840138 | 0 | - | |||||||
3 | Iridogorgia flexilis sp. nov. MW841035 | 0 | 0 | - | ||||||
4 | Iridogorgia splendens GQ868313, GQ868330, KC788229 | 0 | 0 | 0 | 0 | |||||
5 | Iridogorgia sp. GQ868323 | 0 | 0 | 0 | 0 | - | ||||
6 | Iridogorgia densispicula MW841037 | 0.20% | 0.20% | 0.20% | 0.20% | 0.20% | - | |||
7 | Iridogorgia fontinalis GQ868321 | 0.19% | 0.19% | 0.19% | 0.19% | 0.19% | 0.39% | - | ||
8 | Iridogorgia magnispiralis MW841039, FJ268639, GQ868318, KC788237 | 0.19% | 0.19% | 0.19% | 0.19% | 0.19% | 0.39% | 0 | 0 | |
9 | Rhodaniridogorgia fragilis JN227954 | 0.20% | 0.20% | 0.20% | 0.20% | 0.20% | 0.39% | 0 | 0 | 0 |
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Xu, Y.; Zhan, Z.; Xu, K. Morphological and Molecular Characterization of Five Species Including Three New Species of Golden Gorgonians (Cnidaria: Octocorallia) from Seamounts in the Western Pacific. Biology 2021, 10, 588. https://doi.org/10.3390/biology10070588
Xu Y, Zhan Z, Xu K. Morphological and Molecular Characterization of Five Species Including Three New Species of Golden Gorgonians (Cnidaria: Octocorallia) from Seamounts in the Western Pacific. Biology. 2021; 10(7):588. https://doi.org/10.3390/biology10070588
Chicago/Turabian StyleXu, Yu, Zifeng Zhan, and Kuidong Xu. 2021. "Morphological and Molecular Characterization of Five Species Including Three New Species of Golden Gorgonians (Cnidaria: Octocorallia) from Seamounts in the Western Pacific" Biology 10, no. 7: 588. https://doi.org/10.3390/biology10070588
APA StyleXu, Y., Zhan, Z., & Xu, K. (2021). Morphological and Molecular Characterization of Five Species Including Three New Species of Golden Gorgonians (Cnidaria: Octocorallia) from Seamounts in the Western Pacific. Biology, 10(7), 588. https://doi.org/10.3390/biology10070588