1. Introduction
Pasteuria penetrans (
Pp) is a mycelial and endospore-forming bacterium that parasitizes root-knot nematodes (RKN,
Meloidogyne spp.) [
1]. Owing to its high host specificity and biocontrol potential, it has been the focus of considerable research as a biological control agent [
2]. The bacterial spores attach to the cuticle of second-stage juveniles (J2s) as they move through the soil. Spore-encumbered J2s then invade the plant’s roots and develop into females, while the attached spores germinate and proliferate within their bodies. Infected females fail to lay eggs and instead become filled with bacterial spores [
2] (
Figure 1).
It has been reported that
Pp isolates exhibit high host specificity, not only among nematode species but also among different populations within the same nematode species [
3,
4]. A single
Pp population may contain a diversity of genotypes that vary in their spore-attachment specificity [
5,
6,
7]. Consequently, a subpopulation within a
Pp isolate that can attach to one
Meloidogyne population may fail to attach to another, and repeated culturing of that isolate on different
Meloidogyne hosts may lead to shifts in host specificity. Channer and Gowen [
8] tested this hypothesis using
M. graminicola and
M. naasi, both of which were poor hosts for the South African isolate
Pp3. When
M. graminicola was exposed to a high concentration of spores, the isolate multiplied, and the resulting spores showed significantly greater attachment to
M. naasi than the original
Pp3 isolate, but not to
M. graminicola. In contrast, attachment on
M. incognita was significantly reduced [
8].
In the present study, we tested a similar hypothesis using M. luci and M. arenaria, both of which are poor/non-hosts of the Pp3 isolate maintained on M. javanica. J2s of M. luci were exposed to a high concentration of spores, resulting in the development of a new Pp3 sub-isolate (Pp3 M. luci), which developed for three generations. This Pp3 sub-isolate was compared with the original Pp3 isolate maintained on M. javanica, to demonstrate whether its spore-attachment ability had changed. Subsequently, J2s of M. arenaria were exposed to a high spore concentration of Pp3 M. luci, generating another sub-isolate (Pp3 M. arenaria for three generations), whose attachment ability was compared similarly with the two preceding isolates (Pp3 M. javanica and Pp3 M. luci). A reverse process was then conducted. J2s of M. javanica were exposed to high spore concentrations of Pp3 M. luci and Pp3 M. arenaria, producing two additional sub-isolates (Pp3 M. javanica ex. Pp3 M. luci and Pp3 M. javanica ex. Pp3 M. arenaria, each for two generations). These new isolates of Pp3 M. javanica were compared to their respective progenitors (Pp3 M. javanica, Pp3 M. luci and Pp3 M. arenaria) to assess potential shifts in spore-attachment ability.
2. Materials and Methods
All the experiments described below were conducted in the period of 2021–2025.
2.1. Pp Isolates and Meloidogyne Populations
The
Pp isolate used in this study was
Pp3 from South Africa [
9], obtained from the University of Reading, Reading, UK [
10], where it had been maintained for several years on various populations of
M. javanica and
M. incognita. In order to multiply the bacterium, a suitable host plant of a
Meloidogyne species (e.g., tomato) was inoculated with J2s encumbered with
Pp spores. After an appropriate period for female development and egg mass formation, the plant was uprooted, and the roots were washed free of soil. The roots were thoroughly dried so that egg masses produced by uninfected females would desiccate and die. Spores within infected females remain viable for long periods in dried root tissue. A suspension of spores can be prepared by grinding the dried roots with a pestle and mortar, suspending the material in distilled water, and passing it through a 20 μm sieve to remove coarse debris [
11]. Alternatively, infected females can be extracted from the fresh roots and crushed in water to release spores. The
Pp3 isolate obtained from the University of Reading, UK, was further multiplied in
M. javanica populations from Crete, and a spore suspension prepared from dried root material had been stored in a domestic refrigerator since 1995. This “old”
Pp3 spore suspension was subsequently “renewed” on a
M. javanica population from Crete, and a fresh suspension was produced, by crushing infected females [
12].
This renewed suspension was used to encumber J2s of
M. javanica,
M. incognita,
M. hapla,
M. luci and
M. arenaria in 5.5 cm Petri dishes, containing 50,000 spores. For
M. luci and
M. arenaria, a much higher spore density (almost 1,000,000 spores) was used because attachment was minimal or absent. All
Meloidogyne populations originated from Greece, had been previously identified using molecular or/and biochemical methods, and had been maintained in pots planted with tomatoes for several years. Spore-encumbered J2s were used to inoculate tomato plants (cv. ACE) grown in small pots filled with a commercial soil substrate. Plants were maintained in a growth room, at approximately 24–26 °C with a 16 h photoperiod, for 60 days. Afterward, plants were uprooted, roots were washed thoroughly, and females without egg masses were selected and extracted under a dissecting microscope. The females were crushed to release spores, resulting in four
Pp3 isolates:
Pp3
M. javanica 1st,
Pp3
M. incognita,
Pp3
M. hapla and
Pp3
M. luci 1st [
12]. Despite the high spore concentration used, attachment to
M. arenaria J2s remained nearly zero, no infections were observed, and a
Pp3
M. arenaria isolate could not be established. Spore density for each isolate was estimated using a hemocytometer (Fuchs Rosenthal, Weber Scientific International, Stoke-on-Trent/London, UK), under a light microscope (Olympus BX41, Olympus Optical Co. (EUROPA) GMBH, Hamburg, Germany).
2.2. Molecular Identification of Meloidogyne Populations
All nematode populations were re-identified at the beginning of the experiments to confirm their original identity. J2s of
M. javanica,
M. incognita and
M. arenaria were identified using a multiplex PCR assay [
13] with species-specific primers [
13,
14]. Diagnostic bands were obtained for each species using specific sets of primers in the same PCR reaction: Far/Rar for
M. arenaria, Mi2F4/Mi1R1 for
M. incognita and Fjav/Rjav for
M. javanica. The multiplex PCR cycling conditions were 95 °C for 15 min, 40 cycles at 94 °C for 30 s, 57 °C for 1 min, and 68 °C for 2 min, with a final extension cycle of 68 °C for 9 min. Reaction volumes were adapted to 20 μL for each reaction, and primer concentrations were as described in Kiewnick et al. [
13]. In contrast, molecular identification of
M. hapla and
M. luci J2s was performed by amplifying and sequencing the cytochrome oxidase subunit II (
COII) region of mtDNA using primers C2F3 and 1108 [
15]. The resulting sequences were subjected to BLAST 2.16.00 searches in GenBank and showed 99.9% identity with previously deposited sequences. These molecular analyses, including the multiplex PCR and
COII sequencing, confirmed the identity of all populations and were consistent with the diagnostic descriptions of
M. javanica,
M. incognita,
M. arenaria,
M. hapla, and
M. luci [
16], thereby corroborating earlier identifications.
2.3. Molecular Identification of Pp3 Endospores
For genomic DNA extraction from
Pp3 endospores, adult females (50 days after inoculation) from the
Pp3
M. javanica 3rd and
Pp3
M. luci 3rd were transferred to 0.2 μL thin-walled PCR tubes using a needle, crushed with a pipette tip, and mixed with 5 μL microLYSIS
®-PLUS buffer (Microzone, Haywards Heath, UK). Samples were then placed in a thermocycler and subjected to the following temperature conditions: 65 °C for 15 min; 96 °C for 2 min; 65 °C for 4 min; 96 °C for 1 min; 65 °C for 1 min; and 96 °C for 30 s. Two microliters from the resulting lysate were used to amplify the
16S from
P. penetrans using
16S rRNA gene-specific primers 39F (GCGGCGTGCCTAATACA [
17]) and 1166R (CGCCGGCTGTCTCTCCAA [
18]). DNA was amplified using HotStarTaq Master Mix (Solis BioDyne, Tartu, Estonia) according to the manufacturer’s instructions, under the following temperature conditions: 95 °C for 15 min followed by 35 cycles of 94 °C for 30 s, 50 °C for 45 s, 72 °C for 1 min and finally one cycle of 72 °C for 7min. The resulting products were purified and run on a DNA multicapillary sequencer (Model 3130XL genetic analyser; Applied Biosystems, Foster City, CA, USA), using the BigDye Terminator Sequencing Kit v.3.1 (Applied Biosystems, Foster City, CA, USA), at the Stab Vida sequencing facilities (Caparica, Portugal). Amplification of the
16S rRNA gene fragment was performed following the conditions described by Anderson et al. [
19].
2.4. Attachment Tests of Four Pp3 Isolates on Five Meloidogyne Species
Freshly hatched J2s (0–4 days old) of each of the five
Meloidogyne species (
M. javanica,
M. incognita,
M. hapla,
M. luci and
M. arenaria) were obtained from eggs extracted according to Hussey and Barker [
20] and incubated in dishes. Approximately 100 J2s were transferred to 3.5 cm diameter Petri dishes containing suspensions of 10,000 spores per dish, from each of the four
Pp3 isolates (
Pp3
M. javanica 1st,
Pp3
M. incognita,
Pp3
M. hapla and
Pp3
M. luci 1st) in a total volume of 3 mL. After 24 h of incubation, in the spore suspension at approximately 25 °C, the number of spores attached to the cuticle of 10 randomly selected J2s was assessed using an inverted microscope at 200× magnification. Each treatment was replicated in four Petri dishes. Spore attachment and data analysis were conducted separately for each
Meloidogyne species (
Table 1). The attachment of
Pp3
M. luci 1st spores was evaluated again on the four
Meloidogyne species (excluding
M. arenaria) as previously described (
Table 2).
2.5. Development of Pp3 M. javanica 3rd and Pp3 M. luci 3rd Isolates
J2s of M. javanica carrying spores of Pp3 M. javanica 1st and J2s of M. luci carrying spores of Pp3 M. luci 1st were inoculated onto tomato plants as previously described. Two new Pp3 sub-isolates, designated as Pp3 M. javanica 2nd and Pp3 M. luci 2nd, were obtained by crushing spore-infected females. The same procedure was repeated using the newly produced spores for attachment, and two additional sub-isolates of Pp3, designated as Pp3 M. javanica 3rd and Pp3 M. luci 3rd, were generated in the same manner.
2.6. Development of Pp3 M. arenaria 3rd Isolate
As previously noted, selection of Pp3 on M. arenaria was not possible. Therefore, J2s were exposed to a high concentration of spore suspension (approximately 1,000,000 spores) of Pp3 M. luci 3rd and subsequently inoculated onto tomato plants. Infected females were isolated from the roots, crushed, and used to obtain the Pp3 M. arenaria 1st isolate. The same procedure was repeated twice, each time using the newly produced spores for attachment, resulting in the development of the Pp3 M. arenaria 2nd and Pp3 M. arenaria 3rd sub-isolates.
2.7. Reverse Process for Development of Pp3 M. javanica 2nd (Ex. Pp3 M. luci) and Pp3 M. javanica 2nd (Ex. Pp3 M. arenaria) Isolates
Juveniles of M. javanica were exposed to a high spore density (approximately 1,000,000 spores) of Pp3 M. arenaria 3rd and Pp3 M. luci 3rd. The spore-encumbered J2s were then used to inoculate tomato plants. Infected females were isolated from the roots, crushed, and two new Pp3 sub-isolates were obtained. The procedure was repeated using the newly produced spores, resulting in the generation of Pp3 M. javanica 2nd (ex. Pp3 M. luci) and Pp3 M. javanica 2nd (ex. Pp3 M. arenaria).
2.8. Attachment Tests of Pp3 M. javanica, Pp3 M. luci, Pp3 M. arenaria, Pp3 M. javanica (Ex. Pp3 M. luci) and Pp3 M. javanica (Ex. Pp3 M. arenaria) Isolates on Three Meloidogyne Species
Several attachment tests were conducted in 3.5 cm Petri dishes, using the method described previously.
- (a)
The attachment ability of the
Pp3
M. javanica 2nd and
Pp3
M. luci 2nd isolates was evaluated on
M. javanica and
M. luci at two spore densities, 10,000 and 100,000 spores per dish (
Table 3).
- (b)
To determine whether the attachment ability of these
Pp3 isolates followed a similar pattern when tested on other populations of the same nematode species, an additional population of each
Meloidogyne species designated as
M. javanica (other) and
M. luci (other) was included in a separate experiment. These “other” populations originated from different regions of Greece but were maintained in pot cultures, similarly to the “initial” populations used throughout this study. Attachment tests were performed at a density of 40,000 spores per dish (
Table 4).
- (c)
The attachment ability of
Pp3
M. luci 3rd,
Pp3
M. javanica 3rd and
Pp3
M. arenaria 2nd was assessed on
M. luci,
M. javanica and
M. arenaria on three separate occasions, using spore concentrations of 20,000, 40,000 and 80,000 spores per dish (
Table 5).
- (d)
The same
Pp3 isolates were then tested at 80,000 spores per dish on
M. incognita and
M. hapla, two species not involved in the
Pp3 selection process (
Table 6).
- (e)
The attachment ability of
Pp3
M. luci 3rd,
Pp3
M. javanica 3rd and
Pp3
M. arenaria 3rd was evaluated on
M. luci,
M. javanica and
M. arenaria on two separate occasions at spore densities of 40,000 and 80,000 spores per dish (
Table 7).
- (f)
Finally, attachment tests were conducted twice using
Pp3
M. javanica 2nd (ex.
Pp3
M. luci) and
Pp3
M. javanica 2nd (ex.
Pp3
M. arenaria) at a density of 50,000 spores per dish (
Table 8).
2.9. Data Analysis
All results were analyzed, using a one-way ANOVA, and treatment means were compared with the t test (Least Significant Difference, LSD), at the 5% significance level. The one-way ANOVA was used to compare the attachment ability of Pp isolates, exclusively within a nematode species (per column). The coefficient of variation was checked, and in the cases the values were higher than 30, analysis was performed in log(x + 1) values. Data for each variable are in columns as the means of four replicates. Means within a column not sharing a common letter are significantly different (p ≤ 0.05). Statistical analyses were performed using SAS University Edition 9.4 (SAS Institute Inc., Cary, NC, USA).
4. Discussion
Meloidogyne luci was described only twelve years ago [
21], and to our knowledge, no published reports exist regarding its interaction with
Pasteuria penetrans.
The Pp3 isolate used in this study had been cultured for several years on populations of M. javanica and M. incognita from various regions of the world, at the University of Reading, UK, and subsequently on M. javanica populations from Crete. Neither M. arenaria, M. hapla nor M. luci (a species unknown at that time) had ever been used for its multiplication. When tested against these non-cultured hosts, at moderate spore concentrations (10,000 spores/mL), Pp3 showed differential attachment patterns: it attached readily to M. hapla but showed poor or no attachment to M. luci and M. arenaria populations from Greece.
To investigate whether host specificity could be experimentally shifted, we conducted sequential selection experiments. When M. luci J2s were exposed to high spore concentrations (1,000,000 spores/mL), low levels of attachment and infection occurred. Spores from these infected females were then used to encumber J2s of M. luci, and this process was repeated twice more, resulting in a Pp3 isolate selectively adapted to M. luci, designated as Pp3 M. luci 3rd. This isolate lost its ability to attach to J2s of M. javanica. Interestingly, spores of Pp3 M. luci 3rd isolate, when applied at high concentrations, attached to J2s of M. arenaria. Following the same selection procedure, a Pp3 isolate adapted to M. arenaria was produced after two and three generations, designated Pp3 M. arenaria 2nd and Pp3 M. arenaria 3rd. Both Pp3 M. luci 3rd and Pp3 M. arenaria 2nd isolates behaved similarly, attaching readily to M. luci and M. arenaria but not to M. javanica, M. incognita and M. hapla. Later, when Pp3 M. arenaria 3rd isolated was produced, the experiment was repeated, and both Pp3 M. luci 3rd and Pp3 M. arenaria 3rd again showed the same pattern: strong attachment to M. luci and M. arenaria, but not to M. javanica.
Host specificity shift proved to be reversible. When the adapted Pp3 M. arenaria 3rd and Pp3 M. luci 3rd isolates were subjected to repeat selection on M. javanica at high spore concentrations, we obtained two new isolates, Pp3 M. javanica 2nd (ex. Pp3 M. arenaria 3rd) and Pp3 M. javanica 2nd (ex. Pp3 M. luci 3rd). Both isolates, regained the ability to attach readily to M. javanica but lost their ability to attach to M. arenaria and M. luci.
These results demonstrate that
Pasteuria penetrans host specificity is plastic and subject to rapid experimental selection-driven changes in attachment patterns but with clear fitness trade-offs: adaptation to one host group (
M. luci /M. arenaria) was accompanied by loss of attachment to another host group (
M. javanica/M. incognita/M. hapla). A similar observation was reported 34 years earlier using the same
Pp3 isolate, in which host specificity shifted in favor of
M. naasi, accompanied by a fitness cost on
M. incognita [
8]. The altered host specificity, favoring
M. luci and
M. arenaria, later shifted again toward
M. javanica, with a corresponding fitness cost toward
M. arenaria and
M. luci. However, genetic mechanisms beyond it were not investigated.
Differences in
Pp3 attachment to
Meloidogyne spp. may be a consequence of co-evolved, highly specific interactions between spore surface molecules and J2 surface-coat components, modulated by physical and biochemical differences among
Meloidogyne species. Fatty acid and retinol-binding proteins present in the J2 cuticle, as well as hydrophobicity of the J2 epicuticle, have been shown to influence
Pasteuria penetrans endospore adhesion to the nematode surface [
22]. The rapid and reversible changes in host specificity detected in our selection experiments suggest that the
Pp3 population contains substantial pre-existing variation upon which selection can act. Although we did not characterize this variation at the molecular level, previous studies indicate that
Pasteuria isolates often harbor multiple genotypes that differ in attachment efficiency, infection success, and host range [
23,
24]. It is therefore plausible that the adaptation we observed reflects shifts in the relative frequencies of these genotypes, with those better suited to the host species used during each selection cycle becoming more prevalent. In addition, phenotypic plasticity in attachment traits, previously noted as a potential contributor to variation in host compatibility [
25], may help explain the speed and reversibility of the response, enabling sub-populations to adjust their compatibility with different hosts without requiring fixed genetic change. Together, these considerations provide a mechanistic context for the observed host specificity shifts and underscore the potential for rapid phenotypic shifts under selection, within
Pasteuria populations.
Pp3 exhibited different attachment percentages to J2s of M. javanica, M. incognita, M. arenaria, M. hapla, and M. luci because each species possesses a distinct surface-coat “signature,” including differences in carbohydrate and glycoprotein composition, surface charge, and turnover dynamics. The Pp3 isolate is likely adapted to only a subset of these signatures. Consequently, M. luci and M. arenaria may have a more divergent surface-coat profile, and the Pp3 isolate may therefore be poorly adapted, to attach efficiently to these species.