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Microarrays, Volume 4, Issue 2

2015 June - 12 articles

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Articles (12)

  • Article
  • Open Access
3 Citations
6,878 Views
24 Pages

An Optimization-Driven Analysis Pipeline to Uncover Biomarkers and Signaling Paths: Cervix Cancer

  • Enery Lorenzo,
  • Katia Camacho-Caceres,
  • Alexander J. Ropelewski,
  • Juan Rosas,
  • Michael Ortiz-Mojer,
  • Lynn Perez-Marty,
  • Juan Irizarry,
  • Valerie Gonzalez,
  • Jesús A. Rodríguez and
  • Clara Isaza
  • + 1 author

Establishing how a series of potentially important genes might relate to each other is relevant to understand the origin and evolution of illnesses, such as cancer. High‑throughput biological experiments have played a critical role in providing infor...

  • Article
  • Open Access
53 Citations
12,517 Views
17 Pages

“Upstream Analysis”: An Integrated Promoter-Pathway Analysis Approach to Causal Interpretation of Microarray Data

  • Jeannette Koschmann,
  • Anirban Bhar,
  • Philip Stegmaier,
  • Alexander E. Kel and
  • Edgar Wingender

A strategy is presented that allows a causal analysis of co-expressed genes, which may be subject to common regulatory influences. A state-of-the-art promoter analysis for potential transcription factor (TF) binding sites in combination with a knowle...

  • Article
  • Open Access
3 Citations
6,260 Views
15 Pages

Microarray technologies have been the basis of numerous important findings regarding gene expression in the few last decades. Studies have generated large amounts of data describing various processes, which, due to the existence of public databases,...

  • Article
  • Open Access
1 Citations
8,215 Views
10 Pages

Re-Punching Tissue Microarrays Is Possible: Why Can This Be Useful and How to Do It

  • Aurélien Lacombe,
  • Vincenza Carafa,
  • Sandra Schneider,
  • Melanie Sticker-Jantscheff,
  • Luigi Tornillo and
  • Serenella Eppenberger-Castori

Tissue microarray (TMA) methodology allows the concomitant analysis of hundreds of tissue specimens arrayed in the same manner on a recipient block. Subsequently, all samples can be processed under identical conditions, such as antigen retrieval proc...

  • Review
  • Open Access
19 Citations
8,848 Views
14 Pages

NAPPA as a Real New Method for Protein Microarray Generation

  • Paula Díez,
  • María González-González,
  • Lucía Lourido,
  • Rosa M. Dégano,
  • Nieves Ibarrola,
  • Juan Casado-Vela,
  • Joshua LaBaer and
  • Manuel Fuentes

24 April 2015

Nucleic Acid Programmable Protein Arrays (NAPPA) have emerged as a powerful and innovative technology for the screening of biomarkers and the study of protein-protein interactions, among others possible applications. The principal advantages are the...

  • Review
  • Open Access
145 Citations
18,380 Views
17 Pages

Label and Label-Free Detection Techniques for Protein Microarrays

  • Amir Syahir,
  • Kenji Usui,
  • Kin-ya Tomizaki,
  • Kotaro Kajikawa and
  • Hisakazu Mihara

24 April 2015

Protein microarray technology has gone through numerous innovative developments in recent decades. In this review, we focus on the development of protein detection methods embedded in the technology. Early microarrays utilized useful chromophores and...

  • Review
  • Open Access
9 Citations
10,656 Views
18 Pages

Up-to-Date Applications of Microarrays and Their Way to Commercialization

  • Sarah Schumacher,
  • Sandra Muekusch and
  • Harald Seitz

23 April 2015

This review addresses up-to-date applications of Protein Microarrays. Protein Microarrays play a significant role in basic research as well as in clinical applications and are applicable in a lot of fields, e.g., DNA, proteins and small molecules. Ad...

  • Article
  • Open Access
13 Citations
10,732 Views
26 Pages

Immune-Signatures for Lung Cancer Diagnostics: Evaluation of Protein Microarray Data Normalization Strategies

  • Stefanie Brezina,
  • Regina Soldo,
  • Roman Kreuzhuber,
  • Philipp Hofer,
  • Andrea Gsur and
  • Andreas Weinhaeusel

New minimal invasive diagnostic methods for early detection of lung cancer are urgently needed. It is known that the immune system responds to tumors with production of tumor-autoantibodies. Protein microarrays are a suitable highly multiplexed platf...

  • Article
  • Open Access
5 Citations
9,905 Views
8 Pages

Background: Tissue microarray (TMA) technology allows rapid visualization of molecular markers by immunohistochemistry and in situ hybridization. In addition, TMA instrumentation has the potential to assist in other applications: punches taken from d...

  • Review
  • Open Access
47 Citations
11,211 Views
17 Pages

Reverse Phase Protein Arrays (RPPA) represent a very promising sensitive and precise high-throughput technology for the quantitative measurement of hundreds of signaling proteins in biological and clinical samples. This array format allows quantifica...

  • Review
  • Open Access
43 Citations
9,822 Views
18 Pages

Aptamer Microarrays—Current Status and Future Prospects

  • Martin Witt,
  • Johanna-Gabriela Walter and
  • Frank Stahl

24 March 2015

Microarray technologies are state of the art in biological research, which requires fast genome, proteome and transcriptome analysis technologies. Often antibodies are applied in protein microarrays as proteomic tools. Since the generation of antibod...

  • Review
  • Open Access
325 Citations
36,848 Views
29 Pages

3D Cell Culture in Alginate Hydrogels

  • Therese Andersen,
  • Pia Auk-Emblem and
  • Michael Dornish

24 March 2015

This review compiles information regarding the use of alginate, and in particular alginate hydrogels, in culturing cells in 3D. Knowledge of alginate chemical structure and functionality are shown to be important parameters in design of alginate-base...

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Microarrays - ISSN 2076-3905