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Biosulfidogenesis Mediates Natural Attenuation in Acidic Mine Pit Lakes

Laboratory of Microbiology, Wageningen University, Stippeneng 4, 6708 WE Wageningen, The Netherlands
Geochemistry and Sustainable Mining Unit, Department of Geological Resources, Spanish Geological Survey (IGME), Calera 1, Tres Cantos, 28760 Madrid, Spain
Department of Mineralogy and Petrology, University of the Basque Country (UPV/EHU), Apdo. 644, 48080 Bilbao, Spain
NIOZ Royal Netherlands Institute for Sea Research, Department of Marine Microbiology and Biogeochemistry, and Utrecht University, Landsdiep 4, 1797 SZ ‘t Horntje, The Netherlands
Centre of Biological Engineering, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal
Authors to whom correspondence should be addressed.
Microorganisms 2020, 8(9), 1275;
Received: 30 June 2020 / Revised: 10 August 2020 / Accepted: 14 August 2020 / Published: 21 August 2020
(This article belongs to the Special Issue Extremophiles 2.0)
Acidic pit lakes are abandoned open pit mines filled with acid mine drainage (AMD)—highly acidic, metalliferous waters that pose a severe threat to the environment and are rarely properly remediated. Here, we investigated two meromictic, oligotrophic acidic mine pit lakes in the Iberian Pyrite Belt (IPB), Filón Centro (Tharsis) (FC) and La Zarza (LZ). We observed a natural attenuation of acidity and toxic metal concentrations towards the lake bottom, which was more pronounced in FC. The detection of Cu and Zn sulfides in the monimolimnion of FC suggests precipitation of dissolved metals as metal sulfides, pointing to biogenic sulfide formation. This was supported by microbial diversity analysis via 16S rRNA gene amplicon sequencing of samples from the water column, which showed the presence of sulfidogenic microbial taxa in FC and LZ. In the monimolimnion of FC, sequences affiliated with the putative sulfate-reducing genus Desulfomonile were dominant (58%), whereas in the more acidic and metal-enriched LZ, elemental sulfur-reducing Acidianus and Thermoplasma spp., and disproportionating Desulfocapsa spp. were more abundant. Furthermore, the detection of reads classified as methanogens and Desulfosporosinus spp., although at low relative abundance, represents one of the lowest pH values (2.9 in LZ) at which these taxa have been reported, to our knowledge. Analysis of potential biomarker lipids provided evidence that high levels of phosphocholine lipids with mixed acyl/ether glycerol core structures were associated with Desulfomonile, while ceramide lipids were characteristic of Microbacter in these environments. We propose that FC and LZ function as natural bioremediation reactors where metal sulfide precipitation is mediated by biosulfidogenesis starting from elemental sulfur reduction and disproportionation at an early stage (LZ), followed by sulfate reduction at a later stage (FC). View Full-Text
Keywords: acidophiles; sulfate reduction; sulfur reduction; sulfur disproportionation; biosulfidogenesis; bioremediation; sulfide neoformation; lipid biomarker acidophiles; sulfate reduction; sulfur reduction; sulfur disproportionation; biosulfidogenesis; bioremediation; sulfide neoformation; lipid biomarker
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MDPI and ACS Style

van der Graaf, C.M.; Sánchez-España, J.; Yusta, I.; Ilin, A.; Shetty, S.A.; Bale, N.J.; Villanueva, L.; Stams, A.J.M.; Sánchez-Andrea, I. Biosulfidogenesis Mediates Natural Attenuation in Acidic Mine Pit Lakes. Microorganisms 2020, 8, 1275.

AMA Style

van der Graaf CM, Sánchez-España J, Yusta I, Ilin A, Shetty SA, Bale NJ, Villanueva L, Stams AJM, Sánchez-Andrea I. Biosulfidogenesis Mediates Natural Attenuation in Acidic Mine Pit Lakes. Microorganisms. 2020; 8(9):1275.

Chicago/Turabian Style

van der Graaf, Charlotte M., Javier Sánchez-España, Iñaki Yusta, Andrey Ilin, Sudarshan A. Shetty, Nicole J. Bale, Laura Villanueva, Alfons J. M. Stams, and Irene Sánchez-Andrea. 2020. "Biosulfidogenesis Mediates Natural Attenuation in Acidic Mine Pit Lakes" Microorganisms 8, no. 9: 1275.

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