Unveiling the Genetic Landscape of Canine Papillomavirus in the Brazilian Amazon
Abstract
1. Introduction
2. Materials and Methods
2.1. Clinical Sampling and Histopathological Evaluation
2.2. Molecular Analyses: DNA Extraction, Sequencing, and Phylogenetic Inference
2.3. Statistical Analysis
3. Results
3.1. Overview of Clinical and Histopathological Findings
3.2. Molecular Detection and Epidemiological Correlates
3.3. Histological Analysis of Non-Papillomatous Lesions
3.4. Phylogenetic Characterization of CPVs
3.5. Whole-Genome Sequencing of Selected Isolates
4. Discussion
5. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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ID | PCR | Age | Sex | Breed | Municipality/State | Anatomic Location | Macroscopy | Microscopy |
---|---|---|---|---|---|---|---|---|
16AC18BR | CPV1 | 5Y | F | Poodle | Rio Branco/Acre | Ear | Nodular | NA 2 |
20AC18BR | CPV1 | 8Y | F | American Bully | Rio Branco/Acre | Eye | Nodular | SP 3 |
27AC18BR | (+) 1 | 4Y | F | Pinscher | Rio Branco/Acre | Limb | Nodular | NA |
28AC18BR | CPV8 | 4Y | F | Mixed breed | Rio Branco/Acre | Limb | Filiform | SP |
30AC18BR | CPV1 | 2Y | F | Pinscher | Rio Branco/Acre | Head | Cauliflower | SP |
32AC19BR | CPV1 | 7Y | F | Mixed breed | Rio Branco/Acre | Oral | Cauliflower | SP |
34AC19BR | CPV1 | 1Y | F | Mixed breed | Rio Branco/Acre | Oral | Cauliflower | SP |
35AC19BR | (+) | 12Y | M | Pitbull | Rio Branco/Acre | Limb | Filiform | NA |
41AC19BR | CPV1 | 2Y | M | Poodle | Rio Branco/Acre | Oral | Cauliflower | NA |
42AC19BR | CPV1 | 2Y | F | Shih Tzu | Rio Branco/Acre | Oral | Cauliflower | NA |
43AC19BR | CPV1 | 4Y | M | Mixed breed | Rio Branco/Acre | Eye | Cauliflower | NA |
19AC18BR | (-) | 8Y | F | Mixed breed | Rio Branco/Acre | Teat | Nodular | SP |
21RO18BR | (-) | 4 M | M | Labrador | Porto Velho/Rondônia | Oral | Nodular | SP |
22RO18BR | (-) | 8Y | M | Labrador | Porto Velho/Rondônia | Oral | Nodular | ND 4 |
24AC18BR | (-) | 8Y | M | Mixed breed | Rio Branco/Acre | Ear | Cauliflower | ND |
25AC18BR | (-) | 3Y | M | Mixed breed | Rio Branco/Acre | Abdomen | Nodular | SP |
26AC18BR | (-) | 3Y | F | Mixed breed | Rio Branco/Acre | Teat | Nodular | SP |
31AC18BR | (-) | 10Y | F | Mixed breed | Rio Branco/Acre | Teat | Filiform | ND |
01RO19BR | (+) | 12Y | M | Mixed breed | Jarú/Rondônia | Oral | Cauliflower | SP |
02RO19BR | (-) | 8Y | F | Pitbull | Ji-Paraná/Rondônia | Neck | Filiform | ND |
03RO19BR | (+) | 13Y | F | Poodle | Ji-Paraná/Rondônia | Back | Pigmented plaques | ND |
04RO19BR | (+) | 12Y | F | Boxer | Ji-Paraná/Rondônia | Limb | Pigmented plaques | ND |
05RO19BR | CPV1 | 8M | M | Mixed breed | Ouro-Preto/Rondônia | Oral | Cauliflower | ND |
06RO19BR | (-) | 8M | M | Pitbull | Ji-Paraná/Rondônia | Oral | Cauliflower | SP |
07RO19BR | CPV1 | 3Y | M | Mixed breed | Ji-Paraná/Rondônia | Oral | Cauliflower | SP |
08RO19BR | (-) | 10Y | M | Basset Hound | Ji-Paraná/Rondônia | Head | Cauliflower | SP |
09RO19BR | (-) | 10Y | M | Pitbull | Ji-Paraná/Rondônia | Limb | Filiform | ND |
10RO19BR | (-) | 13Y | M | Mixed breed | Ji-Paraná/Rondônia | Limb | Cauliflower | SP |
11RO19BR | (-) | 10Y | M | Mixed breed | Ji-Paraná/Rondônia | Ear | Cauliflower | ND |
12RO19BR | CPV1 | 8Y | F | Mixed breed | Nova-Londrina/Rondônia | Oral | Cauliflower | SP |
13RO19BR | (-) | 2Y | M | Pitbull | Nova-Londrina/Rondônia | Oral | Cauliflower | SP |
14RO19BR | (+) | 13Y | F | Mixed breed | Ji-Paraná/Rondônia | Oral | Cauliflower | ND |
15RO19BR | CPV1 | 13Y | M | Pitbull | Ji-Paraná/Rondônia | Chest | Cauliflower | ND |
16RO19BR | (-) | 12Y | M | Mixed breed | Ji-Paraná/Rondônia | Oral | Cauliflower | SP |
17RO19BR | CPV1 | 7Y | F | Dachshund | Ji-Paraná/Rondônia | Limb | Cauliflower | ND |
18RO19BR | (-) | 13Y | F | Mixed breed | Ji-Paraná/Rondônia | Oral | Cauliflower | ND |
19RO19BR | (-) | 12Y | F | Mixed breed | Ji-Paraná/Rondônia | Eye | Filiform | ND |
20RO19BR | (-) | 12Y | F | Mixed breed | Ji-Paraná/Rondônia | Teat | Filiform | ND |
21RO19BR | (-) | 12Y | F | Mixed breed | Ji-Paraná/Rondônia | Limb | Cauliflower | ND |
22RO19BR | (-) | MI 5 | MI | MI | Ji-Paraná/Rondônia | Back | Cauliflower | ND |
23RO19BR | (-) | MI | MI | MI | Ji-Paraná/Rondônia | Oral | Nodular | ND |
24RO19BR | (-) | MI | MI | MI | Ji-Paraná/Rondônia | Eye | Nodular | ND |
25RO19BR | (-) | MI | MI | MI | Ji-Paraná/Rondônia | Limb | Nodular | ND |
26RO19BR | (-) | MI | MI | MI | Ji-Paraná/Rondônia | Abdomen | Nodular | ND |
27RO19BR | (+) | MI | MI | MI | Ji-Paraná/Rondônia | Oral | Cauliflower | SP |
28RO19BR | CPV1 | MI | MI | MI | Ji-Paraná/Rondônia | Neck | Cauliflower | ND |
30RO19BR | CPV1 | MI | MI | MI | Ji-Paraná/Rondônia | Oral | Cauliflower | SP |
31RO19BR | (-) | MI | MI | MI | Ji-Paraná/Rondônia | Oral | Cauliflower | ND |
32RO19BR | (-) | MI | MI | MI | Ji-Paraná/Rondônia | Chest | Filiform | ND |
33RO19BR | (+) | 7Y | F | Shih Tzu | Ji-Paraná/Rondônia | Eye | Nodular | ND |
34RO19BR | (-) | MI | MI | MI | Ji-Paraná/Rondônia | Teat | Filiform | ND |
35RO19BR | (-) | 8Y | F | Mixed breed | Ji-Paraná/Rondônia | Oral | Cauliflower | ND |
36RO19BR | (-) | 10Y | F | Mixed breed | Ji-Paraná/Rondônia | Neck | Cauliflower | ND |
39RO19BR | (-) | 5M | F | Mixed breed | Ji-Paraná/Rondônia | Oral | Cauliflower | ND |
40RO19BR | (+) | 11Y | F | Poodle | Ji-Paraná/Rondônia | Chest | Filiform | ND |
41RO19BR | (+) | 8Y | M | Mixed breed | Ji-Paraná/Rondônia | Eye | Filiform | ND |
42RO19BR | (-) | 9Y | F | Mixed breed | Ji-Paraná/Rondônia | Teat | Filiform | ND |
43RO19BR | (+) | 11Y | M | Mixed breed | Ji-Paraná/Rondônia | Ear | Cauliflower | ND |
44RO19BR | (+) | 8Y | MI | MI | Ji-Paraná/Rondônia | Oral | Cauliflower | SP |
45AC19BR | (+) | 6Y | MI | MI | Rio Branco/Acre | Oral | Cauliflower | ND |
02AC23BR | (+) | 7Y | F | Pinscher | Rio Branco/Acre | Vulva | Pigmented plaques | NA |
Variables | Viral Status (PCR) | |||
---|---|---|---|---|
Positive (%) | Negative (%) | p-Value | ||
Sex | Female | 16 (57.1) | 12 (42.9) | 0.559 |
Male | 9 (45.0) | 11 (55.0) | ||
Age | 0–3 years | 6 (50.0) | 6 (50.0) | 0.750 |
>3 years | 21 (55.3) | 17 (44.7) | ||
Breed * | Mixed breed | 11 (40.7) | 16 (59.3) | 0.002 |
Small popular | 10 (100.0) | 0 (0.0) | ||
Medium/large popular | 4 (36.4) | 7 (63.6) | ||
State | Acre | 13 (72.2) | 5 (27.8) | 0.026 |
Rondônia | 17 (39.5) | 26 (60.5) | ||
Anatomic localization | Head | 21 (55.3) | 17 (44.7) | 0.262 |
Torso | 4 (28.6) | 10 (71.4) | ||
Limb | 5 (55.6) | 4 (44.4) | ||
Morphology of the lesions * | Cauliflower | 19 (57.6) | 14 (42.4) | 0.073 |
Nodular | 4 (30.8) | 9 (69.2) | ||
Filiform | 7 (33.3) | 8 (66.7) | ||
Pigmented plaques | 3 (100.0) | 0 (0.0) | ||
Microscopy | Squamous papilloma (SP) | 11 (55.0) | 9 (45.0) | 0.254 |
Non-diagnostic to SP | 12 (35.3) | 22 (64.7) |
Sample | Diagnosis | Histopathological Description |
---|---|---|
22RO18BR | Sebaceous hyperplasia | Sample composed of skin with sebaceous gland hyperplasia and epidermal acanthosis. |
24AC18BR | Histiocytoma | Non-encapsulated dermal neoplastic proliferation of round mesenchymal cells, with eosinophilic cytoplasm, prominent nucleoli, moderate pleomorphism, and high mitotic activity (≈30 mitoses/10 HPF). |
31AC18BR | Dermatofibrosis | Collagen proliferation and infiltrate of mast cells and lymphocytes. |
02RO19BR | Collagenous hamartoma | Papillary exophytic nodule composed of marked disorganized collagen proliferation, covered by thin stratified keratinized squamous epithelium. |
09RO19BR | Sebaceous adenoma | Well-differentiated, non-encapsulated sebocytic proliferation in small lobules with scant collagenous stroma. Polygonal cells with vacuolated cytoplasm, round nuclei, stippled chromatin, and prominent nucleoli. Mild anisocytosis and anisokaryosis, no mitoses. |
11RO19BR | Chronic otitis | Epidermis with marked acanthosis and dermal inflammatory infiltrate composed of lymphocytes, plasma cells, macrophages, and neutrophils. Infiltrate also involves dilated ceruminous glands with eosinophilic material and neutrophils. Moderate proliferation of fibrous connective tissue in the dermis. |
18RO19BR | Melanocytoma | Poorly defined, non-encapsulated melanocytic neoplastic proliferation with individual polygonal cells, cytoplasm containing melanin granules, and mild anisocytosis. No mitoses. Numerous freezing artifacts. |
19RO19BR | Melanocytoma | Poorly defined, non-encapsulated melanocytic neoplastic proliferation of polygonal cells with melanin granules often obscuring the nuclei. Nuclei are round to oval with finely stippled chromatin and prominent nucleoli. Mild anisocytosis and anisokaryosis, no mitotic figures. |
20RO19BR | Melanocytoma | Poorly defined, non-encapsulated melanocytic neoplastic proliferation of polygonal cells with melanin granules often obscuring the nuclei. Nuclei are round to oval, finely stippled chromatin, prominent nucleoli. Mild anisocytosis and anisokaryosis, no mitoses observed. |
21RO19BR | Inconclusive | Moderate multifocal epidermal acanthosis associated with moderate orthokeratotic hyperkeratosis. |
22RO19BR | No significant histopathological lesions | Mild multifocal orthokeratotic hyperkeratosis. |
23RO19BR | No significant histopathological lesions | Mild multifocal orthokeratotic hyperkeratosis. |
24RO19BR | Melanocytoma | Poorly defined, non-encapsulated melanocytic proliferation of individual polygonal cells with cytoplasm containing melanin. Round to oval nuclei with stippled chromatin and prominent nucleoli. Mild anisocytosis and anisokaryosis, no mitoses. Moderate inflammatory infiltrates of lymphocytes, plasma cells, and macrophages. |
25RO19BR | Sebaceous adenoma | Well-differentiated, non-encapsulated sebocytic proliferation in small lobules with scant stroma. Polygonal cells with vacuolated cytoplasm, round nuclei, and prominent nucleoli. Mild anisocytosis and anisokaryosis, no mitoses. Epidermis with moderate acanthosis. |
26RO19BR | Inconclusive | Deep dermis with focal extensive area of dilated blood vessels filled with erythrocytes, surrounded by moderate inflammatory infiltrates of lymphocytes, plasma cells, and macrophages. |
31RO19BR | Chronic active ulcerative stomatitis | Submucosa with marked inflammatory infiltrates (neutrophils, lymphocytes, plasma cells, and macrophages), associated with fibrovascular proliferation and fibrin deposition. Mucosa shows multifocal ulceration with neutrophilic infiltrate, bacterial aggregates, and fibrin. Remaining epithelium is moderately hyperplastic with digitiform projections into the submucosa. |
32RO19BR | Trichoblastoma | Moderately defined epithelial neoplastic proliferation in superficial dermis, with polygonal cells in trabeculae over abundant fibrocollagenous stroma. Oval to elongated nuclei, stippled chromatin, prominent nucleoli, mild anisocytosis and anisokaryosis, and 25 mitoses in 2.37 mm2. Mild lymphoplasmacytic infiltrate in underlying dermis. |
34RO19BR | No significant histopathological lesions | Mild multifocal orthokeratotic hyperkeratosis. |
35RO19BR | No significant histopathological lesions | Mild multifocal orthokeratotic hyperkeratosis. In the dermis around skin adnexa, mild infiltrates of lymphocytes, plasma cells, and macrophages. |
36RO19BR | No significant histopathological lesions | Marked diffuse orthokeratotic hyperkeratosis associated with mild epithelial acanthosis. |
39RO19BR | No significant histopathological lesions | Mild infiltrate of lymphocytes and macrophages, along with mild fibrosis. |
42RO19BR | Melanoma | Poorly defined melanocytic neoplastic proliferation in dermis, with polygonal cells containing melanin that obscures nuclei. Nuclei are round to oval, with moderate anisocytosis and anisokaryosis, and 20 mitoses. Moderate inflammatory infiltrate present. |
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Sousa, J.C.d.M.; Lins, A.d.M.C.; Souza, F.d.A.; Manoel, H.O.; de Araújo, C.S.; Tomaya, L.Y.C.; Gasparotto, P.H.G.; Pereira, V.M.d.A.G.; Pacheco, A.D.; Spilki, F.R.; et al. Unveiling the Genetic Landscape of Canine Papillomavirus in the Brazilian Amazon. Microorganisms 2025, 13, 1811. https://doi.org/10.3390/microorganisms13081811
Sousa JCdM, Lins AdMC, Souza FdA, Manoel HO, de Araújo CS, Tomaya LYC, Gasparotto PHG, Pereira VMdAG, Pacheco AD, Spilki FR, et al. Unveiling the Genetic Landscape of Canine Papillomavirus in the Brazilian Amazon. Microorganisms. 2025; 13(8):1811. https://doi.org/10.3390/microorganisms13081811
Chicago/Turabian StyleSousa, Jeneffer Caroline de Macêdo, André de Medeiros Costa Lins, Fernanda dos Anjos Souza, Higor Ortiz Manoel, Cleyton Silva de Araújo, Lorena Yanet Cáceres Tomaya, Paulo Henrique Gilio Gasparotto, Vyctoria Malayhka de Abreu Góes Pereira, Acácio Duarte Pacheco, Fernando Rosado Spilki, and et al. 2025. "Unveiling the Genetic Landscape of Canine Papillomavirus in the Brazilian Amazon" Microorganisms 13, no. 8: 1811. https://doi.org/10.3390/microorganisms13081811
APA StyleSousa, J. C. d. M., Lins, A. d. M. C., Souza, F. d. A., Manoel, H. O., de Araújo, C. S., Tomaya, L. Y. C., Gasparotto, P. H. G., Pereira, V. M. d. A. G., Pacheco, A. D., Spilki, F. R., Silva, M. S. d., Salvarani, F. M., Canal, C. W., Silva, F. R. C. d., & Daudt, C. (2025). Unveiling the Genetic Landscape of Canine Papillomavirus in the Brazilian Amazon. Microorganisms, 13(8), 1811. https://doi.org/10.3390/microorganisms13081811