How Clinicians Conceptualize “Actionability” in Genomic Screening
Abstract
:1. Introduction
2. Materials and Methods
2.1. Participant Recruitment
2.2. Data Collection
2.3. Data Analysis
3. Results
3.1. Definitions of Actionability
“[My definition of] actionable would have to be a truly pathogenic change, for which there is a known treatment or surveillance recommendation that impacts a lifetime of medical management and saves lives.”—Clinical geneticist
“I think of [actionability] really broadly: anything that has the potential, either now or in the future, to modify either life choices or medical treatment … We [could] say, ‘Oh, is that actionable? There’s no treatment for it.’ But then [patients] can enroll in clinical trials and things like that … And I think it’s important to consider the social and emotional aspects of what we consider actionable, too, because it’s very personal. So, some things that someone else wouldn’t consider actionable would be really important psychologically and … wouldn’t necessarily be, ‘Oh, we’re gonna change this medication,’ or do a surgery, or things like that.”—Clinical geneticist
3.2. Evidence Is Contextual
3.2.1. The Question of Now vs. Later
“This is how close we were to really making a big mistake. We looked at all this information, you know, we used the best databases available. We used ClinVar. We used ClinGen. We [had another laboratory perform] a separate assessment of the variants before they returned the results to us. We would look at everything and we would say, ‘Okay, these patients look like they might have a pathogenic or likely pathogenic change.’ [At the last minute, we learned that another laboratory] had actually revised their classification from pathogenic to VUS [variant of uncertain significance]. And so we [did not] return this variant, but it was pretty close to us actually coming to that point. And it actually happened also with a couple of the [heart condition] genes as well, early on, that variants that we thought were likely pathogenic turned out not to be. And so that’s a really big concern, that you’re overtreating not because … you know, it was even the best standard at that time, I guess, but the standard had moved.”—Clinical geneticist
“We have this weird middle line of, like: this [more evidence] is the ideal, [but] this is reality. We don’t want to leave patients hanging, because, like, the reality happens before the ideal does.”—Genetic counselor
“Sometimes the ultimate question is, ‘Think about yourself and your family and would you want to know? Would you pursue this testing if it were offered to you?’ And I think many people would say, ‘Yes.’ And then, the argument is … Isn’t this something that we should be offering for our patients now because it can have a major effect for them?”—Primary care provider
3.2.2. What Evidence Matters?
“I struggle a little bit with the fact that all labs are using the ACMG criteria but yet we can still get different answers from labs even when they’re using the same criteria.”—Genetic counselor
“This is probably the biggest struggle that we have currently in the field. If I really were to go through and rank, like, what are all of my frustrations, [laboratory variability] is probably top of the list right now because there’s not a central place to collect [info about laboratories] and be able to compare back to who’s giving better reports, who’s using actual ACMG classification criteria, who’s doing whatever with whichever lab results come back.”—Genetic counselor
“I don’t disagree with the genetic lab results. I wouldn’t know how to disagree with genetic lab results.”—Primary care provider
“There’s a high bar of evidence that’s required before some big new [screening] initiative is going to be put in place. You’ll hear a lot about barriers, like, ‘Oh, our EHR isn’t ready, doctors don’t know how to do this, they don’t know how to talk to patients about it.’ All of that’s true, but all of that would fall into place pretty quickly if [a] clinical guideline from USPSTF [the U.S. Preventive Services Task Force] says, like, ‘This should be done.’ And why haven’t they said that? Maybe they haven’t asked, but I think they also know that the evidence just isn’t there, and, you know … USPSTF would have a pretty high bar of evidence that would typically rely on RCT-level evidence. So, I mean, that’s the big one … If that happens, everything else falls into place.”—Primary care provider with genetics expertise
“So, precision medicine is the n-of-1, right? Family medicine has been trained, evidence-based medicine has been stuffed down their throat, right? Since day one … To reach the level of what’s considered evidence-based medicine, you have to have a significant N, and that’s not what precision medicine is. And that scares them because this is where they’ve trained, this is where their comfort level is. They can go to their references, they can go to their data, they can go to the national guidelines. But precision medicine isn’t that … Precision medicine is pragmatic, right? You can’t do a huge retrospective or prospective randomized control trial, it just, it doesn’t work. And so, it’s a new comfort zone. So, while we’re educating these young docs to have the competencies, they also need to have the confidence to practice n-of-1 medicine.”—Primary care provider with genetics expertise
“I don’t think everything needs a randomized control trial. It always reminds me of a commentary that was published in a journal … talking about how you don’t need a randomized control trial to prove that parachutes work when you skydive. And so I think pharmacogenomics is kind of like that. And I think there’s a lot of soft outcomes too. I see in my patients personally, sometimes just them getting tested and knowing that we’re aware of their results makes them more open to trying a new medication or to give something a longer shot … And sometimes that will help them have a better outcome, not necessarily because the test led us to that but the act of testing helped them out.”—Primary care provider with genetics expertise
3.2.3. Required Evidence Varies by Test Type
“With Mendelian [single-gene] testing, we are very grounded in an understanding of biological mechanisms … So the way that we demonstrate utility is we first establish this gene has this role and pathway in disease. We can know what [specific variants] people have; we have to, to some extent, do a discovery type of approach for each individual, and then decide if [that variant] is pathogenic in this gene that we know. So you prove utility on an individual basis almost but it’s in the context of, like, we know this disease mechanism. In a lot of medicine, those mechanisms are not as rigorously known in advance, right? So that’s worked for us, and we’ve had a lot of loopholes, I think, in how we were able to approach [evidence generation] because there’s a lot of rare diseases … or, like, just genetics, in general, has been very different from the rest of medicine.”—Genetic Counselor
“One of the criticisms of pharmacogenomics is that we’re still working on growing the evidence of outcomes data. Whenever you’re on … medication, collecting the outcome data whenever you’ve used pharmacogenomics to guide the therapies is probably not that easy. Because you have to follow people so far … to see if the outcome actually occurred or not. That’s, I think, what payers and health plans are looking for. And there is some evidence that exists for that. But it’s not totally, you know, great evidence. And so I think that’s the hardest thing.”—Primary care provider with genetics expertise
“[For] polygenic scores … I can completely empathize with the norm that there should be randomized controlled trials. People that do randomized controlled trials are not geneticists, [geneticists] don’t know how to do that. They don’t know how to do, like, a big epi [epidemiological] study … So it’s this tension of geneticists taking the same approach of, ‘Oh, we’ve proven a relationship and that’s enough to now test people.’ And it’s like, no, it’s an association. It’s not grounded in biology. It’s a very different bit of information.”—Genetic counselor
3.3. Actionability and Institutional Capacity
“Right now, I can understand why for many [primary care providers], you know, they’re dealing with people who have COVID, they’re dealing with the flu, they’re dealing with people who … have diabetes, and so forth, and fundamentally, they wanna know if I ordered these [genetic tests], how are they gonna impact what I’m prescribing, or managing? And right now, in many cases, it doesn’t impact them.”—Genetic counselor
“I was at a clinic talking to primary care providers … And a doctor was sitting next to me and he said, ‘I won’t talk to my patients about genetics. I’m not comfortable…’ And so you’re constantly playing catch up … because the clinicians are overworked, they’re undertrained, frankly, and they don’t have the infrastructure to deal with [the question of] what is the clinical decision support tool necessary for 18- to 35-year-old women with BRCA1 and 2?”—Clinical geneticist
“And I think the smart decision we made at the time was that because we’re a safety net hospital, [with] almost no research infrastructure … no genetics department … we would return results on the CDC Tier 1 conditions. And I think that decision was probably the right one. And, subsequently, many other health systems are recognizing that, you know, the ACMG’s guidelines on incidental findings … [are] not meant for all-comers, you know, for moderate risk population screening. And that, still, the CDC Tier 1 conditions are probably appropriate to return to all-comers.”—Clinical geneticist
“To get to imagining returning 4% pathogenic, likely pathogenic, results in [an expanded list of genes] would be impossible. And so you’d have all these indications in the medical record and you’d have folks who were not getting the standard of care, given those indications. And so the question is, do you then interpret them and just know that?”—Clinical geneticist
“[Our hospital has] extra money sometimes to reinvest in developing new services that might not have a clear guideline behind them or clearly established utility … things we think will be important one day, and we’re gonna back it. So they decided they wanted to build more preventive genetics, population screening infrastructure in a more robust way, and really latched on to both polygenic risk scores and pharmacogenomics since the target audience for those are bigger. It’s more of a general population approach.”—Genetic counselor
4. Discussion
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Owens, K.; Sankar, P.; Asfaha, D.M. How Clinicians Conceptualize “Actionability” in Genomic Screening. J. Pers. Med. 2023, 13, 290. https://doi.org/10.3390/jpm13020290
Owens K, Sankar P, Asfaha DM. How Clinicians Conceptualize “Actionability” in Genomic Screening. Journal of Personalized Medicine. 2023; 13(2):290. https://doi.org/10.3390/jpm13020290
Chicago/Turabian StyleOwens, Kellie, Pamela Sankar, and Dina M. Asfaha. 2023. "How Clinicians Conceptualize “Actionability” in Genomic Screening" Journal of Personalized Medicine 13, no. 2: 290. https://doi.org/10.3390/jpm13020290