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Genomic Databases for Crop Improvement

Pea (Pisum sativum L.) in the Genomic Era

Agritec Plant Research Ltd., Šumperk 787 01, Czech Republic
Department of Botany, Palacký University, Olomouc 783 71, Czech Republic
INRA-UMRLEG, Dijon 21065, France
Western Regional Plant Introduction Station, USDA, Pullman, WA 99164-6402, USA
Institute of Biological, Environmental & Rural Sciences, Aberystwyth University, SY23 3DA, UK
Division of Plant Sciences, University of Dundee at SCRI, Invergowrie, Dundee DD3 6HG, UK
Department of Agriculture and Food Systems, The University of Melbourne, Victoria 3010, Australia
Biology Centre ASCR, Institute of Plant Molecular Biology, České Budějovice 370 05, Czech Republic
North Dakota State University, Department of Plant Sciences, Fargo, ND 58105, USA
Australian Temperate Field Crops Collection, Horsham 3401, Australia
Institute for Sustainable Agriculture, CSIC, Córdoba 14080, Spain
School of Plant Science, University of Tasmania, Hobart, Tasmania 7001, Australia
Crop Development Centre, University of Saskatchewan, Saskatoon S7N 5A8, Canada
Author to whom correspondence should be addressed.
Agronomy 2012, 2(2), 74-115;
Received: 13 December 2011 / Revised: 29 February 2012 / Accepted: 18 March 2012 / Published: 4 April 2012
(This article belongs to the Special Issue Impact of Genomics Technologies on Crop Breeding Strategies)
Pea (Pisum sativum L.) was the original model organism used in Mendel’s discovery (1866) of the laws of inheritance, making it the foundation of modern plant genetics. However, subsequent progress in pea genomics has lagged behind many other plant species. Although the size and repetitive nature of the pea genome has so far restricted its sequencing, comprehensive genomic and post genomic resources already exist. These include BAC libraries, several types of molecular marker sets, both transcriptome and proteome datasets and mutant populations for reverse genetics. The availability of the full genome sequences of three legume species has offered significant opportunities for genome wide comparison revealing synteny and co-linearity to pea. A combination of a candidate gene and colinearity approach has successfully led to the identification of genes underlying agronomically important traits including virus resistances and plant architecture. Some of this knowledge has already been applied to marker assisted selection (MAS) programs, increasing precision and shortening the breeding cycle. Yet, complete translation of marker discovery to pea breeding is still to be achieved. Molecular analysis of pea collections has shown that although substantial variation is present within the cultivated genepool, wild material offers the possibility to incorporate novel traits that may have been inadvertently eliminated. Association mapping analysis of diverse pea germplasm promises to identify genetic variation related to desirable agronomic traits, which are historically difficult to breed for in a traditional manner. The availability of high throughput ‘omics’ methodologies offers great promise for the development of novel, highly accurate selective breeding tools for improved pea genotypes that are sustainable under current and future climates and farming systems. View Full-Text
Keywords: breeding; germplasm; genetic diversity; marker-assisted breeding; legumes; pea breeding; germplasm; genetic diversity; marker-assisted breeding; legumes; pea
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MDPI and ACS Style

Smýkal, P.; Aubert, G.; Burstin, J.; Coyne, C.J.; Ellis, N.T.H.; Flavell, A.J.; Ford, R.; Hýbl, M.; Macas, J.; Neumann, P.; McPhee, K.E.; Redden, R.J.; Rubiales, D.; Weller, J.L.; Warkentin, T.D. Pea (Pisum sativum L.) in the Genomic Era. Agronomy 2012, 2, 74-115.

AMA Style

Smýkal P, Aubert G, Burstin J, Coyne CJ, Ellis NTH, Flavell AJ, Ford R, Hýbl M, Macas J, Neumann P, McPhee KE, Redden RJ, Rubiales D, Weller JL, Warkentin TD. Pea (Pisum sativum L.) in the Genomic Era. Agronomy. 2012; 2(2):74-115.

Chicago/Turabian Style

Smýkal, Petr, Gregoire Aubert, Judith Burstin, Clarice J. Coyne, Noel T. H. Ellis, Andrew J. Flavell, Rebecca Ford, Miroslav Hýbl, Jiří Macas, Pavel Neumann, Kevin E. McPhee, Robert J. Redden, Diego Rubiales, Jim L. Weller, and Tom D. Warkentin. 2012. "Pea (Pisum sativum L.) in the Genomic Era" Agronomy 2, no. 2: 74-115.

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