1. Introduction
Cherry tomatoes (
Solanum lycopersicum var. cerasiforme) are high-value horticultural crops renowned for their nutritional density (e.g., vitamins, antioxidants) and distinctive flavor [
1]. As a typical light-dependent species, adequate irradiance is indispensable for their photosynthetic efficiency, dry matter partitioning, and fruit quality development [
2]. However, low-light (LL) stress, a major abiotic stress prevalent in protected cultivation systems (e.g., winter greenhouses) and cloudy regions, exerts a severe restrictive effect on cherry tomato yield and quality [
3,
4,
5].
LL stress disrupts the balance of light energy absorption and utilization, leading to reduced photosynthetic capacity, altered dry matter allocation, and etiolated growth phenotypes (e.g., excessive stem elongation, decreased stem diameter, and suppressed biomass accumulation) [
6,
7]. Furthermore, LL perturbs reactive oxygen species (ROS) homeostasis, triggering the overaccumulation of O
2− and H
2O
2, which induce membrane oxidative damage (elevated malondialdehyde (MDA)) and growth inhibition [
8,
9]. Critically, tomato plants exhibit differential sensitivity to low light across reproductive stages, leading to stage-specific declines in fruit sweetness and altered sugar composition under stress, which ultimately compromises market value [
10]. Sugar metabolism in tomato fruits is centered on sucrose catabolism and utilization, with key enzymes including soluble acid invertase (SAI), neutral invertase (NI), sucrose synthase (SS), and sucrose phosphate synthase (SPS) governing sucrose synthesis, breakdown, and interconversion [
11,
12,
13]. Dynamic changes in the activities of these enzymes and the resulting sugar flux are tightly coupled to fruit development and quality trait formation. Under LL stress, this intricate sucrose metabolic network is disrupted, leading to perturbed metabolic flux and impaired source–sink relationships. This imbalance ultimately reduces fruit taste and commercial quality [
14,
15].
As a vital stress-responsive phytohormone, exogenous abscisic acid (ABA) positively regulates tomato morphological adaptation, antioxidant defense, and sugar redistribution under adverse environments [
16,
17,
18]. Studies [
16] have shown that ABA regulates tomato plant architecture by coordinating the balance between cell division and elongation. Specifically, ABA restricts the excessive elongation of above-ground tissues to prioritize root system development; meanwhile, it can maintain basic plant growth by optimizing the distribution of photosynthetic products. In addition, ABA significantly enhances the activities of superoxide dismutase (SOD), peroxidase (POD), and catalase (CAT) in tomato leaves by systematically activating antioxidant enzyme synthesis pathways; it also alleviates membrane lipid peroxidation damage induced by ROS, reduces malondialdehyde (MDA) accumulation, and thus exerts a prominent regulatory effect on the tomato antioxidant defense system [
17,
19].
Sugar metabolism is essential for the development of tomato fruit quality. As a central regulatory factor, ABA controls the activities and transcript levels of major enzymes such as invertases and sucrose synthases, thus governing the conversion and accumulation of sucrose to glucose and fructose [
13,
18]. The ABA-responsive element binding protein (AREB) mediates the activation of acid invertase during tomato fruit development, which directly promotes hexose accumulation and thereby enhances fruit sweetness and commercial value [
20]. Notably, the regulatory function of ABA exhibits distinct environmental dependence. Li et al. [
21] demonstrated that ABA mediates the inhibition of tomato hypocotyl elongation via the
SlPP2C.D—
SlSAUR functional module, where ABA indirectly interferes with auxin signal transduction. This finding aligns with the regulatory pattern that ABA suppresses auxin-driven cell elongation in tomato seedlings under low-light (LL) conditions, thereby effectively mitigating etiolation and excessive growth.
Nevertheless, the regulatory network underlying this specific LL-responsive pathway remains incompletely elucidated. Furthermore, how exogenous ABA coordinately modulates vegetative growth, antioxidant homeostasis, and stage-dependent fruit sugar metabolism across distinct ripening stages in cherry tomatoes under continuous LL stress, as well as the crosstalk mechanism between ABA and light signaling pathways, remains poorly characterized and lacks systematic evidence. Therefore, this study aimed to evaluate the effects of exogenous ABA on cherry tomato growth (plant height, stem diameter, biomass) under LL stress, clarify its regulatory role in the antioxidant system to alleviate LL-induced oxidative damage, and explore its stage-specific impacts on fruit sugar metabolism at the mature green (MG), breaker (BR), and red ripe (RR) stages. The results of this work will reveal the coordinated regulation of ABA on vegetative growth, redox balance, and sugar metabolism across fruit developmental stages under low light, and complement the existing knowledge of hormone–light crosstalk in horticultural crops. Among the tested concentrations, the most effective ABA treatment was identified under our experimental conditions, providing insights into a promising foliar application strategy for protected cherry tomato production under low-light stress.
2. Materials and Methods
2.1. Experiment Set Up
This experiment was conducted in the greenhouse of the Institute of Facility Agriculture, Guangzhou, Guangdong Province, China. The natural photosynthetically active radiation (PAR) at noon during the experimental period was approximately 550–600 µmol·m−2·s−1 under normal light conditions. Average diurnal/nocturnal temperature and relative humidity during growth were 31 ± 2 °C/20 ± 2 °C and 65 ± 10%, respectively. Black shade nets (25% transmittance) were used to establish normal light (NL, 100% natural sunlight) and low-light (LL, 25% natural sunlight) regimes, with three exogenous ABA concentrations (CK (0 mg·L−1), T1 (10 mg·L−1), T2 (20 mg·L−1)) applied under each light condition. The concentration and treatment conditions of ABA were determined according to preliminary experiments. A total of six treatments were arranged in a completely randomized design, with eight biological replicate plants per treatment randomly selected from different greenhouse zones to reduce positional microclimate variation and ensure experimental homogeneity. A floating hydroponic system with staggered 40 cm × 100 cm boards was adopted; four-week-old cherry tomato seedlings (Solanum lycopersicum cv. Yuekeda 202) were transplanted into tanks (1.8 m row spacing, 0.33 m intra-row spacing) and uniformly allocated to NL/LL groups immediately after transplantation. Foliar ABA spraying (purity ≥ 99%, Yuanye Bio-Technology, Shanghai, China) was initiated at the primary inflorescence first flowering, conducted 6 times every 3 days (uniformly sprayed to complete leaf coverage with no solution dripping). Topping was performed during vegetative growth to retain 5 fruiting trusses per plant for optimizing photosynthate translocation to reproductive organs. All plants were harvested and the second truss fruits reached full red maturity.
2.2. Determination of Antioxidant Enzyme Activity, MDA, and H2O2 Measurements
The 3rd fully expanded leaf from the top of each plant was collected 3 days after the termination of ABA treatment for the determination of superoxide dismutase (SOD) activity, peroxidase (POD) activity, catalase (CAT) activity, malondialdehyde (MDA) content, and hydrogen peroxide (H2O2) content; SOD, POD, and CAT activities were assayed using specific enzyme activity assay kits (ProNet Biotech Co., Ltd., Nanjing, China), with 0.1 g of fresh leaf tissue homogenized in 1 mL of ice-cold extraction buffer for each assay, while MDA and H2O2 contents were determined using the corresponding assay kits (ProNet Biotech Co., Ltd., Nanjing, China) with 0.2 g of fresh sample per determination, where MDA content was measured via the thiobarbituric acid (TBA) colorimetric method at 532 nm and H2O2 content via the titanium sulfate method at 415 nm using a UV-2600 spectrophotometer (Shimadzu, Kyoto, Japan).
2.3. ABA Concentration Measurements
At the final harvest, the upper canopy fully expanded leaves were packed in aluminum foil, then stored at −80 °C for leaf ABA determination (µg·g
−1 FW). The leaf ABA concentration was measured by enzyme-linked immunosorbent assay (ELISA) following the protocol of Asch [
22].
2.4. Determination of Sugar Content, Titratable Acid Content, and Sugar Metabolism-Related Enzyme Activities
Fruits at three developmental stages from the second truss were sampled for sugar metabolism analysis: mature green (MG), breaker (BR), and red ripe (RR) stages. At each stage, 8 fruits per biological replication were collected. These 8 fruits were pooled into one composite sample to form a single biological replicate, thus reducing individual fruit variation. Soluble sugar content and titratable acid content were determined by high-performance liquid chromatography (HPLC) following the methods described by Yang et al. [
23]. Soluble sugar content was analyzed by HPLC on a Metrosep Carb 1–150 column using 100 mM sodium hydroxide as eluent, while titratable acid content was determined on a Carbohydrate H
+ column using 0.5 mM sulfuric acid and 10% acetone as eluent. Sugar metabolism-related enzymes, including soluble acid invertase (SAI), sucrose synthase (synthetic direction, SS-s), sucrose synthase (cleavage direction, SS-c), sucrose phosphate synthase (SPS), neutral invertase (NI), and amylase (Amy), were extracted according to the protocol of Wang and Zhang [
24]: 0.2 g of fresh fruit tissue was homogenized in 2 mL of ice-cold extraction buffer (pH 7.5) containing 50 mmol·L
−1 Tris-HCl, 10 mmol·L
−1 MgCl
2, and 1 mmol·L
−1 EDTA, followed by centrifugation at 12,000×
g for 15 min at 4 °C. The supernatant was used for enzyme activity assays, which were performed in three technical replicates using a UV-2600 spectrophotometer (Shimadzu, Kyoto, Japan) at specific wavelengths: 540 nm for SS-s, SS-c, and Amy, 595 nm for SPS, and 480 nm for SAI and NI. The mean value of technical replicates was used for subsequent statistical analysis to ensure measurement precision.
2.5. Determination of Sugar Metabolism-Related Gene Expression
Total RNA was extracted from the same fruit samples used for enzyme activity determination, using the Trizol reagent kit (ProNet Biotech Co., Ltd., Nanjing, China). Total RNA was digested with DNase I to eliminate genomic DNA contamination before reverse transcription. The concentration and purity of RNA were evaluated by a NanoDrop 2000 spectrophotometer (Thermo Fisher Scientific, Waltham, MA, USA) (A260/A280 ratio: 1.8–2.0) and 1.2% agarose gel electrophoresis, respectively. First-strand cDNA was synthesized from 1 μg of total RNA using the PrimeScript™ RT reagent kit (TaKaRa, Dalian, China) following the manufacturer’s instructions. Specific primers for target genes (sugar metabolism-related enzymes) were designed with Oligo 6.0 software based on their full-length sequences in the
Solanum lycopersicum genome database (
Table 1). Before formal qRT-PCR analysis, all primers were validated using serial dilutions of cDNA to confirm efficient and specific amplification suitable for the 2
−ΔΔCq method. All qPCR assays were conducted with strict single-variable control. Except for cDNA templates, all reaction conditions remained unified to reduce deviations in amplification efficiency. Meanwhile, technical replicates showed minor Cq variation and high repeatability. All melting curves showed a single specific peak without non-specific amplification or primer dimers, indicating stable reaction performance and reliable quantification results. qRT-PCR was performed on a QuantReady K9600 instrument (Analytik Jena, Jena, Germany) using the TransStart Tip Green qPCR SuperMix kit (TransGen Biotech, Beijing, China), with a total reaction volume of 20 μL (10 μL of 2× SuperMix, 0.4 μL of each primer (10 μmol·L
−1), 2 μL of cDNA template, and 7.2 μL of RNase-free water). The thermal cycling conditions were as follows: initial denaturation at 95 °C for 30 s, followed by 40 cycles of denaturation at 95 °C for 5 s and annealing/extension at 60 °C for 30 s, and a final melting curve analysis (65–95 °C) to verify primer specificity. The Actin gene (
SlActin) was used as the reference gene for normalization, and relative gene expression levels were calculated using the above-mentioned 2
−ΔΔCq method. Each sample was analyzed in three technical replicates (to assess measurement precision) and three biological replicates (to account for biological variation) to ensure data reliability. The gene primers used for qRT-PCR are listed in
Table 1.
2.6. Statistical Analysis
All data were expressed as mean ± standard error of the mean (SEM). Prior to parametric analysis, the Shapiro–Wilk normality test was performed, and all data were confirmed to be normally distributed (p > 0.05). Two-way analysis of variance (ANOVA) was performed using GraphPad Prism 9.5 to examine differences in growth, physiological, and biochemical parameters. When significant interaction was detected between light intensity and ABA concentration, one-way ANOVA followed by an LSD test (p < 0.05) was used for pairwise comparisons. Pearson’s correlation analysis and principal component analysis (PCA) were conducted via Origin 2023 to determine index correlations and identify key indices driving treatment differences, respectively. For individual measurements, plant growth traits (height, diameter, biomass) and antioxidant physiological parameters (SOD, POD, CAT, MDA, H2O2) were determined with n = 8 biological replicates per treatment and stage, while fruit sugar content, sugar-metabolizing enzyme activities, and qRT-PCR-determined gene expression were analyzed with n = 3 biological replicates per treatment and stage. To comprehensively evaluate the overall treatment effects across the whole ripening period, data from three developmental stages (MG, BR, and RR) were integrated for unified correlation and PCA analyses, with a total of n = 9 biological replicates for all fruit-related indices. The PCA plot was generated using Origin 2023 (OriginLab Corporation, Northampton, MA, USA), while all other graphs were plotted using GraphPad Prism 9.5 (GraphPad Software, Inc., San Diego, CA, USA).
3. Results
The present study adopted a two-factor completely randomized experiment, including two light levels (normal light, NL; low light, LL) and three exogenous ABA concentrations (CK: 0 mg·L−1, T1: 10 mg·L−1, T2: 20 mg·L−1). Fruit samples were collected at three key developmental stages: mature green stage (MG), breaker stage (BR), and red ripe stage (RR), to systematically analyze the regulatory effects of ABA on cherry tomato under low-light stress.
3.1. Plant Growth Parameters
At the final harvest, plant height (PH) was significantly affected by Light and ABA, and plants grown under LL with CK treatment had higher PH than those of the other treatments. Moreover, there was an average of 10.1% increase in PH due to the low light without considering the ABA treatment (
p < 0.001). Among the ABA treatments, T2 led to distinctly lower PH as compared to CK and T1 treatments (
p < 0.001). The stem diameter (SD) was significantly affected by Light and Light × ABA, where SD in T1 supplied with LL was significantly lower than those in CK, T1, as well as T2 supplied with NL (
p < 0.05), and LL notably reduced the SD compared to NL (
p < 0.001). By contrast, leaf number (LN) was only significantly affected by Light, and plants grown under LL had an average of 7.8% lower LN than those grown under NL regardless of ABA regimes (
Table 2).
Regarding internode length (IL), LL caused a notable increase in IL compared to NL (
p < 0.01), and IL decreased with the increase in ABA application volume without considering the light condition. Both Light (
p < 0.001) and ABA (
p < 0.05) significantly affected leaf dry mass (LDM) and stem dry mass (SDM). Plants grown at NL had considerably greater LDM and SDM than those grown at LL, and the highest LDM and SDM both appeared significantly in the NL(CK) treatment (
Table 2).
Collectively, low-light and ABA treatments showed distinct effects on cherry tomato growth parameters, with low light promoting etiolation-related traits and reducing biomass, while ABA application exhibited a concentration-dependent regulatory trend on these growth indicators.
3.2. Leaf ABA Content
The leaf ABA concentration showed a significant increase under T2 treatment compared with the CK under both NL and LL environments. Specifically, the ABA concentration in NL + T2 and LL + T2 increased by 182.48% and 567.20% compared to NL(CK), respectively. Notably, plants grown under LL with T2 treatment had higher ABA concentration than any other treatments. Additionally, two-way ANOVA indicated that Light, ABA, and their interaction Light × ABA all had extremely significant effects on leaf ABA concentrations. The ABA concentration of plants in LL was 2.43 times that of plants in NL without considering the ABA treatment. Furthermore, excluding the light treatment, the variation in ABA concentration was primarily driven by ABA application gradients, and 76.85% and 327.34% increases were observed in T1 and T2 (across both light conditions), respectively, compared to CK (
Figure 1).
Leaf ABA content exhibited a dose-dependent increase with exogenous ABA application, and the low-light environment further enhanced ABA accumulation, with the strongest response observed in the combination of LL and high ABA concentration.
3.3. Antioxidant Enzymes Activity, MDA, and H2O2 Content
As shown in
Figure 2A, Light, ABA, and Light × ABA had no significant effect on CAT activity. While leaf POD activity was significantly affected by light intensity (
p < 0.001), that of cherry tomato across all treatments was markedly higher under LL conditions than under NL conditions. Among these treatments, the LL + T2 group exhibited the highest POD activity (
Figure 2B). Furthermore, both Light and ABA affected the SOD activity, with the differences reaching a significant level (
p < 0.001). Specifically, there was an average 19.20% increase in SOD activity when light intensity was reduced, regardless of ABA regimes. Additionally, SOD activity in NL + CK-treated plants was significantly lower than in other treatments. In addition, the interaction between Light and ABA significantly affected both MDA and H
2O
2 levels. Specifically, under LL, CK treatment led to higher MDA and H
2O
2 contents than T1 and T2 treatments (
Figure 2D,E). Furthermore, a significant effect of ABA on leaf H
2O
2 content was observed; specifically, the application of ABA (T1 and T2 treatments) led to a notable reduction in H
2O
2 accumulation under LL (
Figure 2E).
Low light significantly affected antioxidant enzyme activities and reactive oxygen species accumulation, while ABA application showed a regulatory effect on these indicators, with variations consistent with the differences observed among treatments.
3.4. Fruit Sugar Metabolism
The sugar metabolism of fruit was analyzed at fruit development stages, including mature green stage (MG), breaker stage (BR), and red ripe stage (RR). It is clear that glucose content (GluC) was notably affected by Light at MG (
Table 3), and plants exposed to LL had greater GluC than those grown under NL among all treatments. While the GluC at BR and RR was only significantly influenced by Light × ABA, and GluC decreased significantly with increasing fruit maturity across all ABA and light treatments (
p < 0.05).
Regarding fructose content (FruC), ABA, Light, and their interaction had a pronounced impact on FruC at MG, BR, and RR (p < 0.05). At MG, ABA-treated tomato fruits showed higher fructose content in LL + T1 and LL + T2 than those in NL + T1 and NL + T2, respectively (p < 0.05). At the BR stage, LL conditions resulted in significantly higher fructose content than NL conditions for the same ABA treatment; additionally, significantly higher FruC was recorded in fruits from T1 and T2 treatments compared with those under CK treatment under both NL and LL. Surprisingly, plants grown under NL with the CK treatment exhibited the highest FruC at the RR stage compared with those under all other treatments.
Regarding sucrose content (SucC), ABA, Light, and their interaction significantly affected SucC at MG and BR. In addition, plants exposed to T1 treatment under LL exhibited significantly higher SucC than those under NL at both MG and BR (p < 0.05). However, Light had no significant effect on SucC at RR. Notably, ABA application increased SucC in tomato fruit at RR under both NL and LL.
In addition, titratable acidity content (TAC) was also obviously affected by all factors at each fruit ripening stage (
p < 0.05,
Table 3). LL elevated TAC at both the BR and RR stages, while no such effect was observed at the MG stage. Under both NL and LL, the CK treatment resulted in significantly lower TAC in tomato fruit compared with T1 and T2 treatments at the BR and RR stages, with the highest TAC in the T2 treatment and the lowest in the CK treatment (
p < 0.05). Moreover, TAC increased initially and then decreased during tomato fruit ripening, with significant differences among developmental stages; it peaked at BR, followed by the RR stage, and was the lowest at MG (
p < 0.05).
3.5. Activities of Fruit Sugar Metabolism-Related Enzymes
Changes in the activities of enzymes concerned with sugar metabolism during the development of cherry tomatoes are illustrated in
Table 4. The soluble acid invertase (SAI) activity was significantly affected by Light at BR and RR. In addition, individual ABA treatment and the Light × ABA interaction exerted stable and significant effects on SAI activity throughout all fruit developmental stages. Higher SAI activity was found in T2 as compared with CK and T1 among all treatments. The SAI activity was elevated with the progression of fruit maturity, with significant differences observed among the different treatment groups (
p < 0.05).
Similarly, low light and exogenous ABA exerted independent and combined regulation on SS-s activity, with LL + T1 treatment showing markedly higher activity than other treatments at each fruit ripening stage. Furthermore, plants grown at RR had higher SS-s activity than those at MG and BR, irrespective of ABA and Light. Regarding the activity of sucrose cleavage direction (SS-c), Light only had a significant effect on fruit SS-c activity at BR. However, ABA and Light × ABA significantly influenced SS-c activity at each fruit development stage. SS-c activity, on average, rose progressively with fruit ripeness.
Sucrose phosphate synthase (SPS) activity was affected by Light, ABA, as well as Light × ABA, with significant differences (p < 0.001). Among them, light response showed obvious stage-specificity. Obviously, fruits exposed to LL had significantly higher SPS activity than those under NL at BR, whereas the opposite trend was observed at the RR stage. Furthermore, under LL, fruit SPS activity across all treatments changed significantly during ripening, with the highest value observed at BR, followed by MG, and the lowest at RR (p < 0.05).
Neutral invertase (NI) activity at MG was not affected by Light, while Light significantly influenced the NI activity both at BR and RR. Meanwhile, ABA and Light × ABA had obvious effects on NI activity in all fruit growth stages (p < 0.001). Light exhibited a stage-limited effect, while ABA and their interaction presented universal regulation on NI activity. With the exception of the LL + CK treatment, NI activity under all other treatments showed a clear stage-dependent pattern during fruit development, peaking at BR, followed by MG, and declining to the lowest level at RR (p < 0.05). In addition, Light, ABA, and their interaction all significantly regulated amylase (Amy) activity (p < 0.001). Meanwhile, under T1 and T2 treatments, LL increased Amy activity. The combination of LL and T2 resulted in significantly higher Amy activity than the other treatments at BR and RR (p < 0.05). Moreover, fruit Amy activity at RR was higher than at MG and BR.
3.6. Expression Levels of Sugar Metabolism-Related Genes
The results of the ANOVA for the expression levels of sugar metabolism-related genes in different fruit developmental stages are presented in
Table 5.
At the MG stage, Light significantly affected the expression of PK1, SPS, SS, AI, NI, α-Amy, and β-Amy. NL upregulated PK1 expression in the CK treatment, while T1 application under NL upregulated SPS, SS, and AI expression, but downregulated NI and α-Amy expression. Exogenous ABA showed a widespread regulatory effect on most sugar metabolism-related genes at the MG stage, except for FBP. T2 downregulated the PK1 and SS expression, but upregulated α-Amy in both NL and LL conditions. Moreover, Light × ABA interaction also exerted obvious regulatory effects on the expression of PK1, HXK1, HXK2, PEPCK, SPS, SS, and NI at the MG stage.
At the BR stage, Light, ABA, and their interaction significantly regulated the expression of PK1, PK2, HXK2, PEPCK, SPS, SS, AI, NI, and β-Amy. Under NL, CK upregulated the expression of HXK2 and SPS; under LL, CK promoted the expression of HXK2, PEPCK, and NI. T2 inhibited PK1 and HXK1 expression in both NL and LL conditions, and downregulated FBP, SS, and NI expression under LL.
At the RR stage, Light, ABA, and their interaction significantly influenced PK1, HXK1, FBP, PEPCK, SS, AI, NI, α-Amy, and β-Amy expression. Under NL, CK upregulated HXK1, SPS, and α-Amy, but downregulated PEPCK expression; T2 upregulated the expression of PK2, SS, AI, NI, α-Amy, and β-Amy. Under LL, T2 showed opposite effects on SS and AI expression, while CK downregulated PK1 and FBP expression.
Moreover, gene expression presented regular changes along with fruit ripening. The transcription of
PK1 and
PK2 increased obviously at the RR stage, while most structural and metabolism-related genes were downregulated from the MG stage to later ripening stages. In contrast, genes related to sugar transformation and accumulation were upregulated during fruit development, and
NI expression reached the highest level at the BR stage (
Table 6).
Overall, these gene responses exhibited clear biological regularity: light exerted stage-specific regulation, while ABA further modified gene expression patterns under different light environments. Such coordinated changes at the transcriptional level were generally consistent with the variation in corresponding enzyme activities.
3.7. Relations Between Sugar Content, Sugar Metabolism-Related Enzymes, and Corresponding Gene Expression
Correlation analysis revealed distinct relationships among sugar content, key metabolic enzyme activities, and related gene expression under NL and LL environments (
Figure 3). Under NL (
Figure 3A), SucC was negatively correlated with
PK1 expression, while no such correlation was detected under LL (
Figure 3B); instead, SucC was positively associated with SPS and NI activities, together with the transcript levels of
HXK1,
α-Amy, and
β-Amy (
Figure 3B). Across both light regimes, GluC presented consistent negative correlations with
PK2,
PEPCK, and
AI, and a positive correlation with NI activity. In addition, the significant negative correlation between GluC and TAC and the positive correlation between GluC and
α-Amy were only observed under LL (
Figure 3B), whereas these correlations were absent under NL (
Figure 3A). FruC was closely positively correlated with SAI, SS-s, SS-c, SPS, and Amy activities under NL (
Figure 3A), and was mainly correlated with SPS, NI activity, and the expression levels of
FBP,
PEPCK,
SPS,
AI, and
NI under LL (
Figure 3B). Similarly, TAC exhibited differentiated correlation patterns with enzyme activities and gene expression in two light environments. Overall, the correlation networks governing sugar accumulation and metabolic regulation differed markedly with light intensity, and ABA application further reshaped these correlation characteristics in a light-dependent manner.
3.8. PCA of Fruit Sugar Metabolism Attributes
PCA plots of cherry tomato fruit attributes (including sugar contents, TAC, enzyme activities, and gene expression levels) are illustrated in
Figure 4. PC1 and PC2 explained 39.2% and 24.5% of the total variation, respectively, with a cumulative contribution rate of 63.7%, indicating that these two principal components basically reflected the main phenotypic variation. A clear separation between normal light (NL) and low-light (LL) treatments was observed along PC1: all LL treatments (LL + CK, LL + T1, LL + T2) clustered on the negative side of PC1, while all NL treatments (NL + CK, NL + T1, NL + T2) clustered on the positive side of PC1, suggesting that light conditions exerted dominant statistical influence on fruit trait differentiation; specifically, the positive direction of PC1 was associated with TAC, FruC, and the expression of core sugar metabolism genes (
PK1,
HXK1,
HXK2,
SPS,
FBP,
α-Amy), which were enriched in NL treatments, whereas the negative direction of PC1 was associated with SucC, GluC, and
PEPCK expression, which were enriched in LL treatments. Along PC2, the treatments were further differentiated by ABA effects: the positive direction of PC2 was associated with the activities of SAI, SS-s, NI, and Amy, which were clustered with the LL + T2 treatment, suggesting potential statistical associations between high-concentration ABA and these enzyme activities under low-light conditions, while the negative direction of PC2 was associated with FruC and the expression of
AI,
NI,
SS,
PK2,
β-Amy, which were clustered with the NL + T2 treatment, indicating potential links between ABA application and fructose-related gene expression under normal light conditions; overall, the PCA plot reveals two distinct regulatory patterns, where fruits under LL exhibited higher levels of SucC, GluC, and
PEPCK expression along with elevated SAI, SS-s, NI, and Amy activities (reflecting a stress-responsive sugar accumulation strategy), while those under NL displayed higher TAC, FruC, and most sugar metabolism gene expression levels (reflecting a more active sugar acid metabolism network).
Light intensity acted as the primary driving factor for the separation of fruit metabolic traits, while ABA application further differentiated sample distribution under identical light conditions. The relatively low cumulative explanatory rate of PC1 and PC2 indicated that partial physiological information could not be fully interpreted by the two principal components. Moreover, the sample separation in PCA reflected only statistical differences in multiple indicators, rather than direct causal relationships between sugar metabolism traits, enzyme activities, and gene expression.