Sensitivity of Pyrenophora tritici-repentis Isolates from Kazakhstan to QoI and DMI Fungicides
Abstract
1. Introduction
2. Materials and Methods
2.1. Collection of Infected Plant Material and Isolation of Pyrenophora tritici-repentis
2.2. Morphological Identification of Pyrenophora tritici-repentis Isolates
2.3. Induction of Sporulation and Collection of Conidia
2.4. In Vitro Sensitivity Assessment of P. tritici-repentis Isolates to Fungicides
2.5. Genomic DNA Extraction from Pyrenophora tritici-repentis Isolates
2.6. Molecular Identification of P. tritici-repentis Isolates: Amplification and Sequencing of ITS, CHS-1, ToxA, ToxB, PTM, and Cytb
3. Results
3.1. Collection of Pyrenophora tritici-repentis Isolates
3.2. Molecular Identification of P. tritici-repentis Isolates
3.3. In Vitro Mycelial Growth Inhibition Assays of P. tritici-repentis Isolates to Fungicides
3.4. Cytb Amplification Results
4. Discussion
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Data Availability Statement
Conflicts of Interest
References
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| Collection Year | Host | Location | GPS Coordinates | Altitude (m) | Number of Obtained Isolates |
|---|---|---|---|---|---|
| 2022 | Wheat (Triticum aestivum L.) | Almaty Region (Karasay district) | 43.231356° N; 76.701419° E | 792 | 6 |
| 2023 | Wheat (Triticum aestivum L.) | Kostanay Region (Karabalyk district) | 53.860354° N; 62.179314° E | 210 | 4 |
| 2024 | Wheat (Triticum aestivum L.) | Almaty Region (Karasay district) | 43.23665° N, 76.68822° E | 771 | 29 |
| Durum wheat (Triticum durum Desf.) | Kostanay Region (Karabalyk district) | 53.89528° N, 62.17833° E | 202 | 8 | |
| Wheat (Triticum aestivum L.) | Almaty Region (Zhambyl district) | 43.21833° N, 76.55472° E | 780 | 16 | |
| Wheat (Triticum aestivum L.) | Almaty Region (Enbekshikazakh district) | 43.41343° N, 77.21420° E | 783 | 5 | |
| Durum wheat (Triticum durum Desf.) | Akmola Region (Shortandy district) | 51.670526° N, 71.017454° E | 380 | 4 | |
| Wheat (Triticum aestivum L.) | Turkistan Region (Sarkirama) | 41.47358° N, 69.43400° E | 533 | 4 | |
| Total | 76 | ||||
| Locus | Primer Name | Sequence (5′-3′) | Product Size (bp) | Annealing Temp. (°C) | Reference |
|---|---|---|---|---|---|
| ITS | BMB-CR ITS-4b | GTACACACCGCCCGTCG TTCCWCCGCTTATTGATATGC | ~700 | 55 | [63] |
| CHS-1 | CHS-79F CHS-354R | TGGGGCAAGGATGCTTGGAAGAAG TGGAAGAACCATCTGTGAGAGTTG | ~300 | 58 | [64] |
| toxA | TA51F TA52R | GCGTTCTATCCTCGTACTTC GCATTCTCCAATTTTCACG | ~600 | 58 | [64] |
| toxB | TB71F TB6R | GCTACTTGCTGTGGCTATC ACGTCCTCCACTTTGCACACTCTC | ~250 | 58 | [27,64,65] |
| PTM | PTM-F PTM-R | TGCTGAAGCGTAAGTTTC ATGATGAAAAGTAATTTGTG | 411 | 57 | [66] |
| cytb1 | Cytb_F129_F Cytb_F129_R | CGACAGACTGGGTCACTGGT TTCCTAGTCTTTCAGACATTCCAA | 379 | 58 | [49] |
| cytb2 | Cytb_G137_G143_F Cytb_G137_G143_R | CACTCAGGATTCGGTGTGAA TCTCGTTAACGGATCGGACT | 514 | 58 |
| Concentration (µg/mL) | Mycelial Growth Inhibition (%) | Number of Isolates Tested | ||
|---|---|---|---|---|
| Pyraclostrobin (%) | Azoxystrobin (%) | Propiconazole (%) | ||
| 100 | 91.66 ± 1.85 a | 51.77 ± 10.46 a | 90.22 ± 2.13 a | 76 |
| 10 | 91.00 ± 2.05 a | 47.38 ± 6.51 ab | 85.95 ± 7.22 a | |
| 1 | 69.04 ± 8.61 b | 41.47 ± 8.50 b | 70.85 ± 10.84 b | |
| 0.1 | 37.27 ± 7.43 c | 31.97 ± 8.80 c | 48.08 ± 8.65 c | |
| 0.01 | 20.66 ± 5.62 d | 22.58 ± 10.95 d | 12.35 ± 10.47 d | |
| Active Ingredient | Min | Max | Sum | Mean | Std. Error | Variance | Stand. Dev | Median | Mode | Geom. Mean | Coeff. Var |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Azoxystrobin | 24.46 | 51.26 | 780.66 | 39.03 | 1.43 | 41.07 | 6.41 | 38.07 | 35.67 | 38.52 | 16.42 |
| Propiconazole | 47.07 | 71.26 | 1229.80 | 61.49 | 1.73 | 59.51 | 7.71 | 63.90 | NA | 61.01 | 12.55 |
| Pyraclostrobin | 55.18 | 66.61 | 620.55 | 62.06 | 1.27 | 16.05 | 4.01 | 62.38 | NA | 61.94 | 6.46 |
| Ptr Isolates | Azoxystrobin | Pyraclostrobin | Propiconazole | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EC50, mg/L | SE | 95% CI | R2 | EC50, mg/L | SE | 95% CI | R2 | EC50, mg/L | SE | 95% CI | R2 | |
| KZ-1-ZHAM-2024 | 2.121 | 0.501 | 1.13–3.11 | 0.93 | 2.808 | 0.448 | 1.93–3.68 | 0.98 | 0.395 | 0.097 | 0.21–0.69 | 0.94 |
| KZ-3-ZHAM-2024 | 2.105 | 0.043 | 2.01–2.19 | 0.90 | 1.673 | 0.223 | 1.22–2.13 | 0.95 | 1.153 | 0.009 | 1.12–1.19 | 0.98 |
| KZ-3-KOS-2023 | 1.121 | 0.050 | 1.02–1.22 | 0.82 | 2.558 | 0.408 | 1.74–3.38 | 0.88 | 0.167 | 0.036 | 0.10–0.25 | 0.97 |
| KZ-8-KOS-2023 | 7.272 | 0.862 | 5.58–8.96 | 0.87 | 1.091 | 0.612 | 0.96–2.29 | 0.96 | 0.159 | 0.095 | 0.08–0.35 | 0.94 |
| KZ-9-ZHAM-2024 | 1.019 | 0.008 | 1.00–1.03 | 0.81 | 1.213 | 0.084 | 1.03–1.41 | 0.91 | 1.161 | 0.065 | 1.02–1.30 | 0.80 |
| KZ-2-ENB-2024 | 3.885 | 0.589 | 2.73–5.04 | 0.82 | 2.673 | 0.427 | 1.82–3.53 | 0.90 | 0.455 | 0.056 | 0.35–0.57 | 0.93 |
| KZ-5-ENB-2024 | 1.272 | 0.105 | 1.07–1.48 | 0.85 | 1.728 | 0.238 | 1.24–2.31 | 0.95 | 0.732 | 0.048 | 0.63–0.84 | 0.93 |
| KZ-8-KIZ-2022 | 1.229 | 0.089 | 1.05–1.40 | 0.85 | 2.483 | 0.395 | 1.69–3.28 | 0.88 | 0.602 | 0.082 | 0.44–0.76 | 0.91 |
| KZ-3-KIZ-2022 | 4.151 | 0.061 | 4.03–4.27 | 0.83 | 1.527 | 0.184 | 1.15–1.91 | 0.94 | 0.741 | 0.601 | 0.35–1.02 | 0.86 |
| KZ-6-KIZ-2022 | 1.183 | 0.073 | 1.05–1.34 | 0.89 | 1.713 | 0.234 | 1.25–2.17 | 0.96 | 0.236 | 0.024 | 0.19–0.28 | 0.82 |
| KZ-2-TURK-2024 | 3.856 | 0.586 | 2.71–4.97 | 0.93 | 1.078 | 0.245 | 0.89–1.51 | 0.85 | 1.185 | 0.072 | 1.04–1.33 | 0.95 |
| KZ-4-TURK-2024 | 4.114 | 0.614 | 2.92–5.35 | 0.88 | 1.112 | 0.028 | 1.04–1.19 | 0.91 | 1.193 | 0.077 | 1.01–1.37 | 0.89 |
| KZ-22-KIZ-2024 | 10.634 | 0.520 | 9.63–11.64 | 0.95 | 1.265 | 0.035 | 1.18–1.35 | 0.88 | 1.858 | 0.269 | 1.33–2.39 | 0.86 |
| KZ-55-IF-KIZ-2024 | 7.169 | 0.856 | 5.49–8.86 | 0.86 | 1.641 | 0.089 | 1.45–1.84 | 0.92 | 1.190 | 0.076 | 1.03–1.35 | 0.95 |
| KZ-56-IF-KIZ-2024 | 3.369 | 0.528 | 2.33–4.37 | 0.92 | 1.006 | 0.072 | 0.85–1.13 | 0.96 | 1.504 | 0.177 | 1.15–1.86 | 0.97 |
| KZ-57-IF-KIZ-2024 | 2.679 | 0.428 | 1.82–3.54 | 0.89 | 1.078 | 0.195 | 0.79–1.56 | 0.93 | 1.421 | 0.153 | 1.12–1.71 | 0.93 |
| KZ-58-IF-KIZ-2024 | 1.113 | 0.047 | 1.02–1.23 | 0.85 | 1.116 | 0.326 | 0.88–1.75 | 0.98 | 1.192 | 0.076 | 1.04–1.32 | 0.90 |
| KZ-1-AKM-2024 | 1.187 | 0.075 | 1.03–1.35 | 0.94 | 1.354 | 0.056 | 1.21–1.50 | 0.95 | 1.252 | 0.098 | 1.05–1.44 | 0.96 |
| KZ-3- AKM-2024 | 1.089 | 0.037 | 1.01–1.21 | 0.90 | 1.089 | 0.412 | 0.68–1.90 | 0.86 | 1.257 | 0.099 | 1.06–1.45 | 0.92 |
| KZ-8- AKM-2024 | 1.067 | 0.028 | 1.01–1.12 | 0.82 | 1.283 | 0.006 | 1.24–1.31 | 0.91 | 1.206 | 0.082 | 1.01–1.38 | 0.84 |
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Kumarbayeva, M.; Kokhmetova, A.; Nurzhuma, M.; Zeleneva, Y.; Keishilov, Z.; Bolatbekova, A.; Kovalenko, N.; Kharipzhanova, A.; Ainebekova, B.; Bakhytuly, K. Sensitivity of Pyrenophora tritici-repentis Isolates from Kazakhstan to QoI and DMI Fungicides. Agronomy 2026, 16, 1137. https://doi.org/10.3390/agronomy16121137
Kumarbayeva M, Kokhmetova A, Nurzhuma M, Zeleneva Y, Keishilov Z, Bolatbekova A, Kovalenko N, Kharipzhanova A, Ainebekova B, Bakhytuly K. Sensitivity of Pyrenophora tritici-repentis Isolates from Kazakhstan to QoI and DMI Fungicides. Agronomy. 2026; 16(12):1137. https://doi.org/10.3390/agronomy16121137
Chicago/Turabian StyleKumarbayeva, Madina, Alma Kokhmetova, Makpal Nurzhuma, Yuliya Zeleneva, Zhenis Keishilov, Ardak Bolatbekova, Nadezhda Kovalenko, Aidana Kharipzhanova, Bakyt Ainebekova, and Kanat Bakhytuly. 2026. "Sensitivity of Pyrenophora tritici-repentis Isolates from Kazakhstan to QoI and DMI Fungicides" Agronomy 16, no. 12: 1137. https://doi.org/10.3390/agronomy16121137
APA StyleKumarbayeva, M., Kokhmetova, A., Nurzhuma, M., Zeleneva, Y., Keishilov, Z., Bolatbekova, A., Kovalenko, N., Kharipzhanova, A., Ainebekova, B., & Bakhytuly, K. (2026). Sensitivity of Pyrenophora tritici-repentis Isolates from Kazakhstan to QoI and DMI Fungicides. Agronomy, 16(12), 1137. https://doi.org/10.3390/agronomy16121137

