Antiproliferative Activity of Krukovine by Regulating Transmembrane Protein 139 (TMEM139) in Oxaliplatin-Resistant Pancreatic Cancer Cells
Abstract
:Simple Summary
Abstract
1. Introduction
2. Materials and Methods
2.1. Cell Cultures and Reagents
2.2. MTT Assay (Cell Viability Assay)
2.3. RNA Preparation, Library Preparation, and RNA-Seq
2.3.1. Preprocessing of the RNA-Seq Data
2.3.2. Differential Transcriptome and Functional Analysis
2.3.3. Molecular Pathway and Functional Analysis
2.4. Kaplan–Meier Plotter Analysis
2.5. Protein–Protein Interaction (PPI) Network Analysis
2.6. Western Blot
2.7. Wound Healing Assay (Cell Migration Assay)
2.8. Transwell Cell Invasion Assay
2.9. Organoid Medium
2.10. Organoid Viability Assay
2.11. Mutation Profile of PDPCOs
2.12. Data Analysis
3. Results
3.1. Krukovine Shows an Antiproliferative Effect toward KRAS-Mutated Pancreatic Cancer Cells and Oxaliplatin-Resistant Pancreatic Cancer Cells
3.2. RNA Levels of KV-Treated Pancreatic Cancer Cells Show Major Metabolic Pathway
3.3. The Clinical Significance of TMEM139 Expression in Pancreatic Cancer Patients
3.4. Effects of KV on the TMEM 139 Expression and TMEM139-Associated Signaling Pathway in Oxaliplatin-Resistant AsPC-1 Cells
3.5. KV Inhibits the PI3K-Akt-mTOR Pathway in Oxaliplatin-Resistant AsPC-1 Cells
3.6. KV Inhibits Migration and Invasion in Oxaliplatin-Resistant AsPC-1 Cells
3.7. KV Showed an Antiproliferative Effect and Enhanced the Anticancer Effects of Oxaliplatin in KRAS-Mutated Patient-Derived Pancreatic Cancer Organoids
4. Discussion
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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Gene Symbol | Description | kruko/con.fc | kruko/con.raw.pval |
---|---|---|---|
TMEM139 | transmembrane protein 139 | −20.08857481 | 0.000184391 |
TMEM160 | transmembrane protein 160 | −10.07644718 | 0.0002668 |
TMEM102 | transmembrane protein 102 | −9.08294669 | 0.000505557 |
TMEM187 | transmembrane protein 187 | −7.717754905 | 0.001085602 |
TMEM221 | transmembrane protein 221 | −7.22073532 | 0.019434951 |
TMEM249 | transmembrane protein 249 | −6.628590914 | 0.006072763 |
TMEM177 | transmembrane protein 177 | −5.850793145 | 0.004004917 |
TMEM92 | transmembrane protein 92 | −5.793088235 | 0.005077808 |
TMEM121 | transmembrane protein 121 | −5.624075595 | 0.005226063 |
TMEM203 | transmembrane protein 203 | −4.929095646 | 0.008670705 |
TMEM223 | transmembrane protein 223 | −4.591863583 | 0.011703338 |
TMEM238 | transmembrane protein 238 | −4.352286379 | 0.028704807 |
TMEM191B | transmembrane protein 191B | −3.783402356 | 0.034476139 |
TMEM191A | transmembrane protein 191A | −3.7829524 | 0.031869069 |
TMEM53 | transmembrane protein 53 | −3.782392019 | 0.027051 |
TMEM191C | transmembrane protein 191C | −3.556386263 | 0.043266828 |
TMEM141 | transmembrane protein 141 | −3.384076799 | 0.040373276 |
TMEM115 | transmembrane protein 115 | −3.287999353 | 0.045333404 |
TMEM186 | transmembrane protein 186 | −3.242921449 | 0.049370419 |
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Lee, J.-H.; Lee, S.-H.; Lee, S.-K.; Choi, J.-H.; Lim, S.; Kim, M.-S.; Lee, K.-M.; Lee, M.-W.; Ku, J.-L.; Kim, D.-H.; et al. Antiproliferative Activity of Krukovine by Regulating Transmembrane Protein 139 (TMEM139) in Oxaliplatin-Resistant Pancreatic Cancer Cells. Cancers 2023, 15, 2642. https://doi.org/10.3390/cancers15092642
Lee J-H, Lee S-H, Lee S-K, Choi J-H, Lim S, Kim M-S, Lee K-M, Lee M-W, Ku J-L, Kim D-H, et al. Antiproliferative Activity of Krukovine by Regulating Transmembrane Protein 139 (TMEM139) in Oxaliplatin-Resistant Pancreatic Cancer Cells. Cancers. 2023; 15(9):2642. https://doi.org/10.3390/cancers15092642
Chicago/Turabian StyleLee, Jee-Hyung, Sang-Hyub Lee, Sang-Kook Lee, Jin-Ho Choi, Seohyun Lim, Min-Song Kim, Kyung-Min Lee, Min-Woo Lee, Ja-Lok Ku, Dae-Hyun Kim, and et al. 2023. "Antiproliferative Activity of Krukovine by Regulating Transmembrane Protein 139 (TMEM139) in Oxaliplatin-Resistant Pancreatic Cancer Cells" Cancers 15, no. 9: 2642. https://doi.org/10.3390/cancers15092642
APA StyleLee, J. -H., Lee, S. -H., Lee, S. -K., Choi, J. -H., Lim, S., Kim, M. -S., Lee, K. -M., Lee, M. -W., Ku, J. -L., Kim, D. -H., Cho, I. -R., Paik, W. -H., Ryu, J. -K., & Kim, Y. -T. (2023). Antiproliferative Activity of Krukovine by Regulating Transmembrane Protein 139 (TMEM139) in Oxaliplatin-Resistant Pancreatic Cancer Cells. Cancers, 15(9), 2642. https://doi.org/10.3390/cancers15092642