Contributions of Circulating microRNAs for Early Detection of Lung Cancer
Abstract
:Simple Summary
Abstract
1. Introduction
2. Materials and Methods
2.1. Study Population
2.2. miRNA Isolation
2.3. TaqMan Assay
2.4. Statistical Analyses
3. Results
3.1. Candidate miRNA Selection
3.2. Predictive Performance of miRNAs for Early Detection of Lung Cancer
4. Discussion
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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Variable | Cases | Controls |
---|---|---|
N | 102 | 212 |
Age, mean ± StDev | 65 ± 6 | 65 ± 6 |
Sex, N (%) | ||
Female | 32 (31%) | 63 (30%) |
Male | 70 (69%) | 149 (70%) |
Smoking Status, N (%) | ||
Current | 70 (69%) | 143 (67%) |
Former | 32 (31%) | 69 (33%) |
Smoking Pack Years (PYs), mean ± StDev | 53.5 ± 21.4 | 48.7 ± 20.5 |
Histology, N (%) | ||
Adenocarcinoma | 37 (36%) | - |
Squamous Cell Carcinoma | 27 (26%) | - |
Other Non-Small-Cell Lung Carcinoma | 38 (37%) | - |
Hsa-miRNA | Alternate ID(s) | Validated Reports of Dysregulation in Lung Cancer Clinical Specimens | TaqMan Assay ID | References | |
---|---|---|---|---|---|
Tissue | Biofluid | ||||
miR-15b-5p | miR-15b | 3 | 390 | [9,10,16] | |
miR-17-5p | miR-17 | 2 | 11 | 2308 | [9,10,11,16,17,18,19,20,21,22,23,24] |
miR-19b-3p | miR-19b; miR-19b-1 | 1 | 9 | 396 | [9,10,22,25,26,27,28,29,30,31] |
miR-21-5p | miR-21 | 7 | 45 | 397 | [9,10,18,23,25,28,29,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76] |
miR-28-3p | 2 | 2446 | [9,10] | ||
miR-30b-5p | miR-30b | 5 | 602 | [9,10,11,12,77] | |
miR-30c-5p | 5 | 419 | [9,10,11,12,78] | ||
miR-31-5p | miR-31 | 5 | 6 | 2279 | [25,32,34,58,68,70,79,80,81,82,83] |
miR-92a-3p | miR-92a-2 | 6 | 431 | [9,10,11,12,16,84] | |
miR-101-3p | miR-101 | 1 | 1 | 2253 | [10,85] |
miR-106a-5p | miR-106a | 4 | 2169 | [9,10,53,86] | |
miR-126-3p | miR-126 | 6 | 21 | 2228 | [9,10,11,25,28,32,34,41,51,55,68,70,71,74,87,88,89,90,91,92,93,94,95,96,97,98,99] |
miR-133a-3p | miR-133a | 3 | 1 | 2246 | [10,100,101,102] |
miR-140-3p | 2 | 2 | 2234 | [9,10,79,103] | |
miR-140-5p | 4 | 1187 | [9,10,11,12] | ||
miR-142-3p | 3 | 464 | [9,10,11] | ||
miR-145-5p | miR-145 | 2 | 13 | 2278 | [10,13,23,32,39,49,51,57,60,71,95,96,98,104,105] |
miR-148a-3p | miR-148; miR-148a | 2 | 5 | 470 | [10,11,12,44,63,106,107] |
miR-155-5p | miR-155 | 2 | 9 | 2623 | [38,40,49,57,61,67,70,108,109,110,111] |
miR-182-5p | miR-182 | 6 | 10 | 2334 | [17,23,25,34,38,55,61,68,70,71,79,93,112,113,114,115] |
miR-197-3p | miR-197 | 5 | 497 | [9,10,31,38,61] | |
miR-203a-3p | miR-203 | 2 | 1 | 507 | [17,116,117] |
miR-205-5p | miR-205 | 8 | 15 | 509 | [23,28,32,34,35,51,62,68,70,72,77,80,88,95,96,99,114,116,118,119,120,121,122] |
miR-210-3p | miR-210 | 7 | 20 | 512 | [9,17,23,34,41,51,54,55,66,67,68,70,79,83,88,89,93,95,96,98,99,107,121,123,124,125,126] |
miR-221-3p | miR-221 | 2 | 7 | 524 | [9,10,13,23,29,94,120,127,128] |
miR-320a-3p | miR-320 | 3 | 2277 | [9,10,13] | |
miR-375 | 2 | 5 | 564 | [22,68,70,71,129,130,131] | |
miR-451a | miR-451 | 5 | 7 | 1141 | [9,10,25,31,34,35,74,97,132,133,134] |
miR-486-5p | miR-486 | 7 | 16 | 1278 | [9,10,11,34,35,41,50,52,54,55,68,70,71,75,79,88,108,122,126,134,135,136,137] |
miR-660-5p | miR-660 | 3 | 1515 | [9,10,138] |
Case:Ctrl | |||
---|---|---|---|
Hsa-miRNA | Fold-Change | AUC | p |
miR-451a | 0.88 | 0.37 | 0.0002 |
miR-320a-3p | 1.36 | 0.62 | 0.0005 |
miR-210-3p | 1.63 | 0.62 | 0.0008 |
miR-92a-3p | 1.16 | 0.58 | 0.0217 |
mir-21-5p | 1.33 | 0.58 | 0.0258 |
miR-140-3p | 1.11 | 0.57 | 0.0318 |
miR-148a-3p | 1.14 | 0.56 | 0.1135 |
miR-660-5p | 1.24 | 0.55 | 0.1264 |
miR-106a-5p | 0.97 | 0.46 | 0.2274 |
miR-197-3p | 1.23 | 0.54 | 0.2274 |
miR-17-5p | 1.01 | 0.47 | 0.3960 |
miR-101-3p | 1.05 | 0.53 | 0.4178 |
miR-221-3p | 1.04 | 0.52 | 0.4789 |
miR-15b-5p | 0.98 | 0.48 | 0.4880 |
miR-30b-5p | 1.02 | 0.48 | 0.5065 |
miR-155-5p | 1.02 | 0.48 | 0.5686 |
miR-142-3p | 1.06 | 0.52 | 0.6024 |
miR-30c-5p | 1.02 | 0.48 | 0.6238 |
miR-19b-3p | 1 | 0.49 | 0.6705 |
miR-140-5p | 0.96 | 0.49 | 0.6988 |
miR-145-5p | 1.07 | 0.51 | 0.7983 |
miR-375 | 1.11 | 0.51 | 0.8771 |
miR-28-3p | 1.07 | 0.5 | 0.8949 |
miR-486-5p | 1.08 | 0.5 | 0.9118 |
miR-126-3p | 1.05 | 0.5 | 0.9762 |
miR-133a-3p | 1.1 | 0.5 | 0.9815 |
Specificity | 4MP Sensitivity | 4MP + 3 miRNA Sensitivity | Δ (95% CI) | p |
---|---|---|---|---|
99% | 19.0% | 31.0% | 11.9% (2.38, 23.9) | 0.031 |
98% | 19.0% | 33.3% | 14.3% (4.8, 26.2) | 0.019 |
95% | 19.0% | 38.1% | 19.1% (0.0, 28.6) | 0.006 |
90% | 35.7% | 42.9% | 7.1% (-4.8, 26.2) | 0.369 |
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Vykoukal, J.; Fahrmann, J.F.; Patel, N.; Shimizu, M.; Ostrin, E.J.; Dennison, J.B.; Ivan, C.; Goodman, G.E.; Thornquist, M.D.; Barnett, M.J.; et al. Contributions of Circulating microRNAs for Early Detection of Lung Cancer. Cancers 2022, 14, 4221. https://doi.org/10.3390/cancers14174221
Vykoukal J, Fahrmann JF, Patel N, Shimizu M, Ostrin EJ, Dennison JB, Ivan C, Goodman GE, Thornquist MD, Barnett MJ, et al. Contributions of Circulating microRNAs for Early Detection of Lung Cancer. Cancers. 2022; 14(17):4221. https://doi.org/10.3390/cancers14174221
Chicago/Turabian StyleVykoukal, Jody, Johannes F. Fahrmann, Nikul Patel, Masayoshi Shimizu, Edwin J. Ostrin, Jennifer B. Dennison, Cristina Ivan, Gary E. Goodman, Mark D. Thornquist, Matt J. Barnett, and et al. 2022. "Contributions of Circulating microRNAs for Early Detection of Lung Cancer" Cancers 14, no. 17: 4221. https://doi.org/10.3390/cancers14174221
APA StyleVykoukal, J., Fahrmann, J. F., Patel, N., Shimizu, M., Ostrin, E. J., Dennison, J. B., Ivan, C., Goodman, G. E., Thornquist, M. D., Barnett, M. J., Feng, Z., Calin, G. A., & Hanash, S. M. (2022). Contributions of Circulating microRNAs for Early Detection of Lung Cancer. Cancers, 14(17), 4221. https://doi.org/10.3390/cancers14174221