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Article

Isochromosome 12p Formation Regulates Vitamin D Metabolism in Testicular Cancer

by
Peter Törzsök
1,
Jasper Van Goubergen
2,
Martin Pichler
3,4,
Renate Pichler
5,*,† and
Frédéric R. Santer
2,*,†
1
Department of Urology and Andrology, Paracelsus Medical University Salzburg, 5020 Salzburg, Austria
2
Division of Experimental Urology, Department of Urology, Medical University of Innsbruck, 6020 Innsbruck, Austria
3
Division of Oncology, Department of Internal Medicine, Medical University of Graz, 8010 Graz, Austria
4
Translational Oncology, University Hospital of Augsburg, 86156 Augsburg, Germany
5
Department of Urology, Comprehensive Cancer Center Innsbruck, Medical University of Innsbruck, 6020 Innsbruck, Austria
*
Authors to whom correspondence should be addressed.
†
These authors contributed equally to this work.
Nutrients 2023, 15(10), 2384; https://doi.org/10.3390/nu15102384
Submission received: 13 April 2023 / Revised: 17 May 2023 / Accepted: 18 May 2023 / Published: 19 May 2023
(This article belongs to the Special Issue Insights into the Role of Vitamin D in the Prevention and Control of Cancer and Other Chronic Noncommunicable Diseases)
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Versions Notes

Abstract

:
Isochromosome 12p (iChr12p) is typical in almost all invasive testicular cancers. Increased copy number of genes on 12p is associated with the development of a clinically manifest tumor; however, the causative genes have not yet been identified. Chromosome 12 harbors many genes involved in Vitamin D metabolism. RNAseq analysis of Vitamin D receptor (VDR) genes from the TCGA cohort revealed that clustering of VDR expression signatures could differentiate between pure seminomas and non-seminomatous germ cell tumors (NSGCT). Using TCGA mRNA expression of anabolic (CYP2R1, CYP27A1 and CYP27B1) and catabolic (CYP24A1) Vitamin D enzymes, positive (PTHLH, IFNG, and TNF) and negative (FGF23) feedback regulators could also clearly distinguish between pure seminomas and NSGCT. We hypothesize that the regulation of Vitamin D metabolism might be disturbed through iChr12p formation, influencing testicular carcinogenesis via increased FGF23 and PTHLH expression. While FGF23 represses CYP27B1 and activates catabolism of active hormone, increased PTHLH secretion can lead to hypercalcemia via inactivation of VDR. In conclusion, testicular cancer is associated with extensive modifications in intratesticular Vitamin D homeostasis. Further research is needed to clarify whether Vitamin D deficiency causes the formation of iChr12p and whether Vitamin D deficiency via iChr12p genomic aberration is involved in testicular carcinogenesis.

1. Introduction

Testicular germ cell tumor (TGCT) is the most commonly developed cancer among men aged between 15 and 40 years, accounting for 5% of urological tumors, with 3 to 10 cases per 100,000 males/per year recorded in Western countries [1]. Epidemiological risk factors for the development of TGCT include testicular dysgenesis syndrome, hypospadias, decreased spermatogenesis and impaired fertility or disorders of sex development, family history of TGCT among first-degree relatives and the presence of a contralateral TGCT [2,3,4,5,6]. An isochromosome of the short arm of chromosome 12 (iChr12p) is a well-known genetic marker in most invasive TGCT but is not detected in germ cell neoplasia in situ (GCNIS) [7,8,9,10].
Incidence of testicular germ cell tumor increased in recent decades, especially in industrialized countries [11]. Geographic disparities in the incidence of TGCT, with the highest rate in Northern Europe, are well known but lack clear explanations [12]. Understanding the causes of these specific geographic differences in TGCT incidence rates between and within countries would help further our understanding of the aetiology of this cancer entity. Seasonal variation in cancer incidence was previously described for melanoma, prostate cancer and thyroid cancer based on research released by the Swedish Cancer Registry [13]. We recently observed that the registered incidence of TGCT in Austria also has a strong seasonal pattern, with a reduction in the tumor incidence during the summer months and an increase during the winter months [14]. We hypothesize that these temporal patterns may reflect complex biological processes affecting the likelihood of TGCT carcinogenesis. Seasonal patterns may be caused by periods of insufficient Vitamin D supply related to decreased exposure to sunlight during the winter months. However, no research on a possible association between Vitamin D metabolism in the pathogenesis of TGCT and the observed seasonal occurrence is currently available.
1,25-Dihydroxyvitamin D3 (1,25(OH)2D3) is the most active hormonal form of Vitamin D and exerts its action via a specific intracellular Vitamin D receptor (VDR, located on chromosome (chr) 12q12-q14). The VDR regulates the transcriptional activity of 1,25(OH)2D3-influenced genes through heterodimerizing with other nuclear hormone receptors, in particular the retinoid acid receptor RXRα. Vitamin D-responsive elements (VDREs) localized in the promoter region of DNA of target genes are bound through the VDR-complexes and regulate transcription of target genes [15,16]. The influence of Vitamin D on male fertility, in particular on sperm motility, is well documented and suggests an organ-specific regulation of Vitamin D3 metabolism and action in the testes [17].
Pre-Vitamin D3 is produced from 7-dehydrocholesterol in the epidermis of the skin upon UVB exposure via sunlight and isomerizes to Vitamin D3. It underlies strong seasonal variations at temperate latitudes, which can be compensated for through dietary intake of Vitamin D3. Conversion of Vitamin D3 from skin or oral ingestion to the major circulating form 25-hydroxyvitamin D3 (25(OH)D3) occurs mainly in the liver via CYP2R1, although other organs also express this 25-hydroxylase. Further conversion to 1,25(OH)2D3 via CYP27B1 (chr12q13.3-q14) mainly occurs in the kidney, contributing to the majority of the circulating 1,25(OH)2D3-levels; however, numerous organs also express this enzyme, leading to local higher expression levels of the hormone [18]. 25(OH)D3 and, preferentially, 1,25(OH)2D3 can be 24-hydroxylated via CYP24A1, which is the first step in catabolism. Notably, expression of both enzymes, i.e., CYP27B1 and CYP24A1, as well as VDR, are documented in different organs of the male reproductive tract, including the testis [19], Figure 1.
A variety of hormones regulate Vitamin D metabolism [20,21]. Firstly, 1,25(OH2)D3 regulates its own concentration levels via feedback mechanisms. 1,25(OH2)D3-activated VDR induces CYP24A1 expression, leading to catabolism of the hormone. The wide expression of CYP24A1 in various organs protects the body against excess concentrations of 1,25(OH2)D3. On the other hand, 1,25(OH2)D3 concentration-dependent modulation of CYP27B1 activity is likely to be limited to the kidney. In addition to these feedback regulations, two other hormones, i.e., parathyroid hormone (PTH) and fibroblast growth factor-23 (FGF23, chr12p13.3), both of which play major roles in maintaining calcium and phosphate homeostasis, can regulate Vitamin D metabolism [20]. PTH is secreted through the parathyroid gland when serum calcium levels are low. As a consequence, PTH induces renal expression of CYP27B1, resulting in increased 1,25(OH2)D3 production. In a feedback mechanism, PTH production is inhibited through high 1,25(OH2)D3 and calcium levels. FGF23 is secreted through osteocytes and osteoblasts, being able to decrease receptors (FGFR1/3) and the Klotho (KL) co-receptor serum 1,25(OH2)D3 levels via the FGF through inhibiting the expression of CYP27B1, while stimulating the expression of CYP24A1 in the kidney (Figure 2). In the murine testis, a strong regulation of CYP27B1 expression via FGF23 was documented [22,23]. Cytokines, in particular interferon-γ (IFNG, chr12q14) and tumor necrosis factor-α (TNF, whose receptor TNFRSF1A is located on chr12p13.2), are also strong stimulators of 1,25(OH2)D3 production in extra-renal tissues [23]. Increased production of PTH-like hormone (PTHLH, a.k.a. PTHRP, Osteostatin, chr12p11.2-p12.1) is a frequent cause of humoral hypercalcemia related to malignancy [24]. PTHLH shares with PTH the same receptor (PTHR1); however, while PTH is a circulating hormone, PTHLH acts in a paracrine or autocrine manner [25]. PTHLH expression is suppressed using 1,25(OH2)D3 on the transcriptional and post-translational levels [26]. In summary, numerous factors regulating Vitamin D3 metabolism are located on chr12. Copy number amplification of 12p with potential deletion of one copy of 12q via isochromosome formation in testicular carcinogenesis may disrupt this complex regulation of Vitamin D action, as well as calcium and phosphate homeostasis. Disturbance of calcium homeostasis in the testis via isochromosome 12p formation might also be the cause of the frequently observed testicular microlithiasis in TGCT cases [27]. The aim of this study was to evaluate, for the first time, a possible association between Vitamin D in the pathogenesis of TGCT and the presence of iChr12p formation.

2. Materials and Methods

2.1. Cell Lines and Chemicals

TCam-2, NT2D1, 2102EP, and NCCIT were a kind gift provided by Prof. Hubert Schorle (University of Bonn, Bonn, Germany) and were authenticated via short tandem repeat analysis in case STR profiling data was available in public repositories. Cells were grown in RPMI (TCam-2) or DMEM (NT2D1, 2102EP and NCCIT) with 10% (v/v) fetal bovine serum under standard conditions. 1,25(OH)2D3 was purchased from Merck Sigma-Aldrich (Vienna, Austria, D1530) and dissolved in ethanol at 10 µM stock concentration. All-trans retinoic acid (ATRA) was purchased from Merck Sigma-Aldrich (R2625) and dissolved in DMSO at 100 mM stock concentration.

2.2. Proliferation Assays

Cells were seeded at 30% confluency in 96-wells under either steroid-free conditions (using 10% (v/v) charcoal-stripped fetal bovine serum) or full growth medium (using 10% fetal bovine serum) and grown for 48 h prior treatment, with increasing concentrations of 1,25(OH)2D3 and in the absence or presence of 100 nM ATRA. Either 24 or 72 h after hormonal treatment, 1/10 volume WST-1 reagent (Roche, Vienna, Austria) was added to the culture medium, and absorption at 450 nm (with subtraction of the absorption reference values at 650 nm) was measured 150 min after incubation at 37 °C in a BioTek Cytation 5 (Agilent Technologies, Vienna, Austria) plate reader.

2.3. Data from GENIE and GTex Repositories

The GENIE cohort v13.0-public [28] was accessed via the cbioportal.org platform [29], and datasets of male GCT were retrieved. The copy number segment file was downloaded and displayed in the IGV browser [30]. The CNV Summary with thresholds set at >0.5 (log2(tumor copy number/normal copy number) for amplifications and <−0.5 for deletions was used to assess the percentage of patients with copy number aberrations. Normalized tissue expression data in transcripts/million were downloaded from the GTex portal and visualized with violin plots generated using GraphPad Prism 9.

2.4. VDR Gene Signature, Clustering Analysis, and Idiogram

The VDR gene signature was curated from the following gene sets available at the Molecular Signatures Database (MSigDB, Broad Institute): STAMBOLSKY_RESPONSE_TO_VITAMIN_D3_UP; non-genomic actions of 1,25 dihydroxyvitamin D3; Vitamin D (calciferol) metabolism; Vitamin D in inflammatory diseases; Vitamin D Metabolism; Vitamin D Receptor Pathway; Vitamin D-sensitive calcium signaling in depression; and from the literature [31]. The full gene list of the VDR gene signature can be found in Supplementary Table S1. The RNA-seq of TCGA PanCancer Altlas collection [32] under the form of Z-scores normalized to diploid samples were downloaded from the cBioPortal platform [29]. Heatmaps were generated via package pheatmap using the Pearson clustering algorithm [33]. Genes from this VDR gene signature located on chromosome 12 were used to create an idiogram using the package CopyNumberPlots [34].

3. Results

3.1. Chromosome 12p Amplifications in TGCT

All invasive TGCT, pure seminomas and non-seminomatous germ cell tumors (NSGCT), and GCNIS cells are aneuploid. The only consistent chromosomal abnormality in invasive TGCT are gains of the short arm of chromosome 12, which are reported to arise via isochromosome formation [35] or reciprocal loss of heterozygosity [36]. Thus, Chr12p copy number alterations (CNA) is a common feature in the majority of patients with invasive TGCT [37]. To assess whether the frequency of chromosome 12p amplifications differentiates between the various histological subtypes of TGCT, we screened CNA data of 12p in 776 patients (801 samples) from the Genie project (Figure 3). Interestingly, pure seminomas and choriocarcinomas presented with the lowest maximal frequency (47% and 44%, respectively) of all GCT histology subtypes, as defined by the Genie project. Higher maximal frequencies were found in NSGCTs (50%), mixed GCT (63%), yolk sac tumors (65%), embryonal carcinomas (71%) and teratomas (60%). Yolk sac tumors also have a high maximal frequency of chromosome 20 amplifications (46%). Therefore, an increase in the copy number of genes on 12p is linked to the development of a clinically manifest TGCT. However, identification of causative genes was hampered by the fact that most 12p gains involve rather large genomic intervals containing unmanageable numbers of candidate genes. Various genes on 12p that could be implicated in testicular carcinogenesis are shown in Table 1, with KRAS being the most frequently mutated gene in TGCT. However, a definite causative agent for chromosome 12p amplifications in TGCT and/or a potential benefit for tumor growth from increasingly expressed genes located on chromosome 12p are currently unknown.

3.2. Vitamin D-Responsive Genes on Chromosome 12

Based on the observation of a strong seasonal incidence of TGCT, we hypothesized that the recurrent chromosome 12p amplification (and deletion of chromosome 12q in case of isochromosome formation) in TGCT could involve Vitamin D metabolism and/or action. Indeed, the clinical disorder of Vitamin D dependency rickets type II maps on 12q. Sp1 transcription factor gene (SP1) and VDR are also co-localized on human chromosome arm 12q [38]. To further corroborate an involvement of genes implicated in Vitamin D3 metabolism and action and located on chromosome 12, we used a combined VDR gene signature set (see Section 2). An idiogram of chromosome 12 for genes from this set is shown in Figure 4. From 386 genes in this set, 10 (3.1%) genes localized to chromosome 12p and 15 (3.89%) genes localized to 12q. Those genes were functionally grouped into calcium and phosphate homeostasis, cytokine signaling, cell cycle and apoptosis and Vitamin D metabolism and signaling. Among the calcium and phosphate homeostasis group, important regulators of Vitamin D3 metabolism can be found. On 12p, tumor PTHLH secretion can lead to hypercalcemia. FGF23 on 12p represses the 12q-localized CYP27B1 transcription in the kidney and in extra-renal tissues [22]. Further genes regulating Vitamin D3 synthesis from the cytokine signaling group are IFNG (12q), as well as possible modified signaling of TNF by a member of the TNF receptor superfamily, i.e., TNFRSF1A (12p). Thus, we hypothesize that Chr12p can formation leads to a copy number gain in FGF23 and PTHLH, and in case of isochromosome formation, to a copy number loss in CYP27B1 and VDR. This finding indicates that disturbances in the feedback loops in Vitamin D metabolism may occur through copy number aberrations.

3.3. Expression of Vitamin D-Responsive Genes in TGCT

To further corroborate a disturbance of Vitamin D metabolism and its consequent genomic and non-genomic action through 12p amplification, we used a publicly available dataset of 144 TGCT patients (60 pure seminoma and 84 NSGCTs) from The Cancer Genome Atlas (TCGA) project encompassing DNA and RNAseq data, as well as clinical annotations [31]. With the help of cbioportal.org, we analyzed mRNA expression of the previously used Vitamin D gene signature. Clustering analyses of these VDR expression signatures were clearly able to discriminate pure seminomas from NSGCT. This signature also showed a tendency to cluster the various NSGCT histology subtypes (Figure 5). The frequency of genomic alterations in genes in the VDR gene signature between seminomas and NSGCTs was comparable: in total, 70% and 63.1% of seminomas and NSGCTs, respectively, had a least one alteration in this gene set. Of these, 35% and 13.1% were mutations, 0% and 1.19% were structural variants, 8.33% and 15.48% were CNAs (amplification or deletion) and 18.33% and 17.86% were multiple alterations. Interestingly, VDR gene expression alone was not able to discriminate between pure seminoma and NSGCT types, leading to the conclusion that its expression and, especially, its activity are likely regulated at the post-transcriptional and/or endocrine level. Unfortunately, exact diagnosis dates are not annotated in the TCGA database, which prevented us from analyzing seasonal variations in the VDR gene signature. From this data, we concluded that VDR and/or its ligand 1,25(OH)2D3 may have a role in carcinogenesis and/or progression of TGCT and that differential activities, i.e., differential transcriptional programs of the VDR and non-genomic actions correlate with the histology subtype of GCT. Thus, this VDR gene signature may assist histopathological diagnosis of TGCT subtypes.

3.4. Vitamin D Response of TGCT Cell Lines on Tumor Cell Viability

Based on the result that differential transcriptional programs of the VDR and non-genomic actions of Vitamin D3 correlate with the histology subtype, we tested whether Vitamin D3 treatment may affect the proliferative capacity of seminoma and NSGCT cell lines. To this end, we measured proliferation of the one available pure seminoma (TCam-2) and three NSGCT (NT2D1, NCCIT and 2102EP) cell lines via WST-1 assay after treatment with different concentrations of 1,25(OH)2D3. The median concentration of 1,25(OH)2D3 in the body is 59.4 pg/mL (142 pmol/L) [39], which has a short half-life of a few hours in serum [40]. For this reason, we tested over a wide concentration range (50 pmol/L–200 nmol/L) using charcoal-stripped serum in order to remove steroids from the culture medium that might interfere with Vitamin D action. However, in contrast to a previous study [31], we were not able to find an effect on proliferation on either cell line (Figure 6A). To assess whether co-activation of the VDR’s dimerization partner RXR is needed to influence proliferation of these cell lines, co-treatment with all trans retinoic acid (ATRA, 100 nM) and 1,25(OH)2D3 was performed. Moreover, after a shorter incubation time, growth in non-steroid depleted medium and addition of all trans retinoic acid (ATRA, 100 nM), the ligand of RXR did not result in reduced proliferation in either cell line (Figure 6B). We, therefore, concluded that Vitamin D has no effect on proliferation of seminomatous and non-seminomatous cell lines, albeit an active VDR gene signature is present.

3.5. Expression of Regulators of Vitamin D Metabolism in TGCT

To discover whether differences in local concentrations of Vitamin D in the carcinogenic areas of the testicle might be responsible for the different VDR gene signatures between the histology subtypes, we assessed the expression of key regulators of Vitamin D metabolism in the TCGA dataset. This method included the anabolic (CYP2R1, CYP27A1 and CYP27B1) and catabolic (CYP24A1) enzymes, as well as positive (PTHLH, IFNG, and TNF) and negative (FGF23) feedback regulators. High mRNA expression of anabolic regulators and enzymes of Vitamin D was found in pure seminomas, while catabolic regulators and negative feedback enzymes are highly expressed in NSGCT (Figure 7). This shows that the differential activation of VDR signatures genes in seminomas and NSGCTs might be the result of GCT subtype-specific concentrations of 1,25(OH2)D3. These differences in local 1,25(OH2)D3 concentrations might be a cause of differential expression and activity of Vitamin D regulators mediated via chromosome 12 CNAs. In situ determinations of 1,25(OH2)D3 concentrations in malignant areas of both GCT subtypes and correlation with expression and activity of Vitamin D regulators, along with determination of chromosome 12 CNAs, may confirm this finding.

4. Discussion

The VDR is expressed in over 30 human tissues involved in the reproductive system, such as testis, uterus, and ovary, and it was also previously found in the immune system. Expression of VDR was shown to exhibit tumor-suppressing and anti-proliferative effects, promoting apoptosis and inhibiting angiogenesis [41]. Extensive research suggested that Vitamin D deficiency is associated with the increased risk of cancer [42]. The over-expression of VDR is described as an endogenous reaction to tumor progression correlated with a favorable prognosis [43,44]. A high expression of VDR is strongly linked to a lower chance of prostate cancer progression and cancer-related death [43]. Thus, we hypothesize that seasonality of testicular cancer incidence might be influenced through Vitamin D supporting the relationship between Vitamin D and cancer. Several epidemiologic trials confirmed that a low Vitamin D status is also a risk factor for several types of cancer, such as breast cancer [45], prostate cancer [46,47] and colorectal cancer [48], suggesting that Vitamin D supplementation might be cancer preventive. Nevertheless, there are still conflicting data in this field, and large randomized control trials could not corroborate these findings for the general population [49]. Moreover, current evidence from cell experiments, ecological and observational studies and RCTs does not allow us to give definitive answers regarding whether Vitamin D supplementation can prevent and treat cancer [50]. A possible explanation might be that accumulating data suggest that the metabolism and functions of Vitamin D are dysregulated in many types of cancer, conferring resistance to the antitumorigenic effects of Vitamin D supplementation and thereby contributing to the development and progression of cancer [21]. This fact might also explain our findings showing no significant decrease in proliferation in four different testicular cancer cell lines stimulated with 1,25(OH)2D3.
Vitamin D metabolism is active in normal testes but is lost during the malignant progression from GCNIS to overt TGCT. TGCT is associated with extensive modifications in intratesticular Vitamin D, calcium and phosphate homeostasis [51]. In TGCT, it was demonstrated that Vitamin D also regulates testicular cell proliferation and apoptosis [31,52]. Initial evidence of testicular expression of VDR was also reported in vitro and in vivo [31]. Another in vitro study of VDR expression confirmed high nuclear and cytoplasmic staining in an embryonal carcinoma cell line, where VDR was inducible with the addition of Vitamin D but downregulated through testosterone [53]. A specific correlation was also found between VDR, enzymes involved in Vitamin D metabolism and cancer cell differentiation: high levels are observed in carcinoma in situ, whereas low levels are found in invasive seminoma [54]. In addition, Vitamin D3 deficiency was associated with embryonal carcinoma and advanced clinical tumor stage in testicular cancer [55]. Interestingly, a high prevalence of Vitamin D3 deficiency was confirmed in TGCT up to 83% [55]. In contrast, no permanent reduction in serum 25(OH)D3 levels after orchiectomy but a transient post-operative drop of 25(OH)D levels were found in 177 TGCT patients [56]. Nevertheless, a recent study by Lesko et al. demonstrated that low-plasma Vitamin D was associated with an unfavorable response to therapy and disease recurrence in TGCT [57].
In addition, VDR expression and individual enzymes playing a role in Vitamin D metabolization in human spermatozoa can differentiate between normospermic patients and men with subfertility [19,58,59]. In an animal study with VDR-null mice and rodents, Vitamin D deficiency showed an association with decreased fertility because of impaired sperm production and bad sperm motility [54]. Vitamin D may play a role in metabolism during fetal development, as VDR expression was demonstrated in fetal gonocytes and pre-spermatogonia [59]. The expression of VDR in Sertoli cells is controlled through follicle-stimulating hormone (FSH), where it plays a role in germ cells’ maturation and motility [19]. Cellular investigations demonstrated that Vitamin D impacts the activity of various immune cells, such as epithelial cells, macrophages, monocytes and activated CD4 T cells [60,61,62]. Vitamin D3 can induce apoptosis and cell cycle arrest in endothelial cells isolated from tumor, while this effect was not observed in cases of normal endothelial cells [63]. TGCT patients were revealed to have low levels of Vitamin D on long-term follow-up [64]. The lack of Vitamin D3 is also associated with erectile dysfunction, lower sperm motility and decreased sperm concentration, emphasizing its role in male infertility [19,65]. In a recent study, idiopathic male infertility was associated with Vitamin D3 deficiency [66]. Vitamin D3 can significantly reduce oxidative stress on aged rat testis through the antioxidant defense system [52]. In addition, humans who took daily doses of vitamin D showed decreased oxidative DNA damage [67]. Oxidative stress was shown to be associated with male infertility [68]. Higher levels of oxidative stress were seen in patients with reduced sperm counts and concentrations [69]. The testicles with normal spermatogenesis demonstrated higher VDR expression on IHC when compared with biopsies from patients with hypospermatogenesis [53].
Although testicular microlithiasis is more common in TGCT patients, it is not an independent risk factor for testicular cancer [70]. As we previously mentioned, iChr12p formation might lead to a copy number loss of CYP27B1 and possibly VDR, as well as a copy number gain of FGF23 and PTHLH. In detail, high FGF23 represses CYP27B1 and activates the catabolism of active hormones. Blomberg et al. demonstrated an overexpression of FGF23 in GCNIS contributing to the formation of testicular microlithiasis [51]. High PTHLH may compete with parathyroid hormone (PTH) for binding to parathyroid hormone 1 receptor (PTH1R), thus leading to inactivation of VDR activity and mal- or non-absorbance of calcium, leading to calcium deposits, as shown in Figure 2. These increased calcium deposits may explain the presence of testicular microlithiasis, which is a condition where calcium deposits form in the lumina of seminiferous tubules or arise from the tubular basement membrane components [71]. Underlining the possible association between vitamin D metabolism and iChr12p formation, previous immuno-histochemistry (IHC) analysis showed that VDR expression was significantly lower in pure seminoma, and not present in GCNIS, compared to NSGCT [31]. In line with these findings, iChr12p was not detected in GCNIS and pure seminomas appear to lack a gain of 12p [7,8,9,10]. In our analysis, the highest frequency of iChr12p amplification was shown in NSGCTs, such as yolk sac tumors (65%), embryonal carcinomas (71%), etc. Furthermore, there was no difference in VDR expression on IHC between metastatic and non-metastatic TGCTs [64].
Metabolism of Vitamin D appears to be restored in the process of tumor differentiation, as it was observed in the differentiated somatic and extraembryonic components of teratomas [72]. A clear decrease in VDR and Vitamin D-metabolizing enzyme expression was seen in invasive TGCTs when compared to pre-invasive GCNIS. As opposed to GCNIS, expression of VDR and Vitamin D-metabolizing enzymes was non-existent or low for embryonal carcinoma (EC) cells, implying that this pathway was deactivated during the shift from GCNIS to EC [59]. Numerous genes involved in Vitamin D metabolism are located on chromosome 12, which might be disturbed through iChr12p formation. According to our data, TCGA mRNA expression of vitamin D regulatory genes can accurately differentiate between pure seminomas and NSGCT. CYP24A1, i.e., one of the Vitamin D regulatory genes, which can help to distinguish between pure seminomas and NSGCT, can serve as a prognostic tool to predict good sperm quality and, thus, fertility [19,72]. Furthermore, the proportion of sperm with CYP24A1 expression in a prospective study was revealed to be a better marker of successful pregnancy outcome after intrauterine inseminations than sperm motility and concentration [73]. The oncogenic role of CYP24A1 was also shown in breast, prostate, and lung cancer [21]. Its inhibition results in a higher local concentration of calcitriol, thus leading to an enhanced antitumor effect [74]. It was previously suggested that the overexpression of CYP24A1, i.e., inactivation of calcitriol, could be critical for progression of colorectal adenoma to carcinoma [75].

5. Conclusions

iChr12p is a common feature in patients with invasive testicular cancer. However, candidate genes involved in the mechanism that gain 12p sequences and, thus, in testicular carcinogenesis have not been identified to date. Importantly, chromosome 12 harbors many genes that are involved in cellular calcium homeostasis and Vitamin D metabolism. RNAseq analysis of VDR genes and TCGA mRNA expression of Vitamin D regulatory genes were clearly able to discriminate pure seminomas from NSGCT. We hypothesize that the regulation of Vitamin D metabolism might be disturbed through iChr12p formation influencing testicular carcinogenesis. Further prospective research is now needed to determine which role iChr12p formation and Vitamin D metabolism plays in testicular tumorigenesis, as well as the potential for them to become targets for future therapies or diagnostic tools. Thus, a prospective study is planned to correlate iChr12p formation with altered VDR gene signature in seminoma and NSGT via RNAseq. Although our data do not provide proof that seasonal variations impact TGCT carcinogenesis, in situ determinations of Vitamin D concentrations and correlation with iChr12p formation in TCGT patients are planned, correlating iChr12p formation with the diagnosis date.

Supplementary Materials

The following supporting information can be downloaded at: www.mdpi.com/article/10.3390/nu15102384/s1, Table S1: List of the VDR gene signature.

Author Contributions

R.P., F.R.S. and P.T.: Conceptualization; P.T., J.V.G., R.P. and F.R.S.: Writing—original draft, review and editing; M.P.: Supervision, writing—review and editing; J.V.G., F.R.S. and R.P.: Figure preparation; F.R.S., R.P., P.T. and M.P.: Data analysis. All authors have read and agreed to the published version of the manuscript.

Funding

This research received no external funding.

Institutional Review Board Statement

Not applicable.

Informed Consent Statement

Not applicable.

Data Availability Statement

The data used for the analyses described in this manuscript were obtained from the GTEx Portal on 04/01/23.

Acknowledgments

The authors would like to acknowledge the American Association for Cancer Research and its financial and material support in the development of the AACR Project GENIE registry, as well as members of the consortium for their commitment to data sharing. Interpretations are the responsibility of study authors. The Genotype–Tissue Expression (GTEx) Project was supported by the Common Fund of the Office of the Director of the National Institutes of Health, and by NCI, NHGRI, NHLBI, NIDA, NIMH and NINDS. Figure 2 was created with Biorender.com (license to Zoran Culig).

Conflicts of Interest

The authors declare no conflict of interest.

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Figure 1. mRNA expression of VDR, CYP24A1 and CYP27B1 in kidney cortex, liver, sun-exposed skin, thyroid gland and testis. Log2 transformed violin plots (expressed in transcripts/million).
Figure 1. mRNA expression of VDR, CYP24A1 and CYP27B1 in kidney cortex, liver, sun-exposed skin, thyroid gland and testis. Log2 transformed violin plots (expressed in transcripts/million).
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Figure 2. Hormonal and feedback regulation of Vitamin D and possible disturbance through iChr12p formation. Copy number loss of CYP27B1 and VDR, and a copy number gain of FGF23 and PTHLH, are the consequences of iChr12p formation. Consecutively high FGF23 represses CYP27B1 and activates catabolism of active hormone. PTH and PTHLH share same receptor PTH1R. Thus, high PTHLH inhibits binding of PTH to PTH1R. PTHLH is less likely than PTH to stimulate 1,25-dihydroxyvitamin D production and lacks feedback inhibition from plasma calcium. As a result, VDR will be inactivated, and mal-/non-absorbance of calcium leads to calcium deposits. Figure is adapted from [21].
Figure 2. Hormonal and feedback regulation of Vitamin D and possible disturbance through iChr12p formation. Copy number loss of CYP27B1 and VDR, and a copy number gain of FGF23 and PTHLH, are the consequences of iChr12p formation. Consecutively high FGF23 represses CYP27B1 and activates catabolism of active hormone. PTH and PTHLH share same receptor PTH1R. Thus, high PTHLH inhibits binding of PTH to PTH1R. PTHLH is less likely than PTH to stimulate 1,25-dihydroxyvitamin D production and lacks feedback inhibition from plasma calcium. As a result, VDR will be inactivated, and mal-/non-absorbance of calcium leads to calcium deposits. Figure is adapted from [21].
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Figure 3. Amplification of chromosome 12p in patients from Genie cohort. Frequency of CNAs in tumor genomes of GCTs retrieved from Genie cohort. Maximal frequency of patients with 12p amplifications was 47% for seminomatous GCT (SGCT, 736 patients, 771 samples), 50% for non-seminomatous GCT (NSGCT, 79 patients, 82 samples), 63% for mixed GCT (339 patients, 350 samples), 65% for yolk Sac tumors (65 patients, 67 samples), 71% for embryonal carcinoma (49 patients, 50 samples), 60% for teratomas (42 patients, 43 samples) and 44% for choriocarcinomas (28 patients, 30 samples). Red, amplifications (log2(tumor copy number/2) > 0.5); blue, deletions (log2(tumor copy number/2) < −0.5.
Figure 3. Amplification of chromosome 12p in patients from Genie cohort. Frequency of CNAs in tumor genomes of GCTs retrieved from Genie cohort. Maximal frequency of patients with 12p amplifications was 47% for seminomatous GCT (SGCT, 736 patients, 771 samples), 50% for non-seminomatous GCT (NSGCT, 79 patients, 82 samples), 63% for mixed GCT (339 patients, 350 samples), 65% for yolk Sac tumors (65 patients, 67 samples), 71% for embryonal carcinoma (49 patients, 50 samples), 60% for teratomas (42 patients, 43 samples) and 44% for choriocarcinomas (28 patients, 30 samples). Red, amplifications (log2(tumor copy number/2) > 0.5); blue, deletions (log2(tumor copy number/2) < −0.5.
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Figure 4. Idiogram of chromosome 12 with annotated VDR gene signature. Genes from VDR gene signature located on chromosome 12 are shown and color-encoded according to their primarily involved signaling pathways. Red: calcium homeostasis; blue: cytokine signaling; green: cell cycle and apoptosis; yellow: Vitamin D metabolism and signaling. During iChr12p formation, an amplification of 12p-arm and a deletion of 12q arm occurs.
Figure 4. Idiogram of chromosome 12 with annotated VDR gene signature. Genes from VDR gene signature located on chromosome 12 are shown and color-encoded according to their primarily involved signaling pathways. Red: calcium homeostasis; blue: cytokine signaling; green: cell cycle and apoptosis; yellow: Vitamin D metabolism and signaling. During iChr12p formation, an amplification of 12p-arm and a deletion of 12q arm occurs.
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Figure 5. RNAseq clustering analysis of VDR gene signature mRNA expression of genes from VDR gene signature in TGCT dataset from TCGA (144 patients, 60 pure seminomas (in red), 84 NSGCTs (in blue)). NSGCT subtypes are shown (black, embryonal carcinoma; light blue, mixed GCT; grey, teratoma; brown, yolk sac tumor). Heatmap generated via R package heatmap using correlation Pearson clustering algorithm.
Figure 5. RNAseq clustering analysis of VDR gene signature mRNA expression of genes from VDR gene signature in TGCT dataset from TCGA (144 patients, 60 pure seminomas (in red), 84 NSGCTs (in blue)). NSGCT subtypes are shown (black, embryonal carcinoma; light blue, mixed GCT; grey, teratoma; brown, yolk sac tumor). Heatmap generated via R package heatmap using correlation Pearson clustering algorithm.
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Figure 6. Stimulation with 1,25(OH2)D3 in seminomatous (TCam-2) and non-seminomatous (NT2D1, 2102EP, NCCIT) TGCT cell lines did not result in reduced proliferation. (A) TCam-2, NT2D1, 2102EP and NCCIT cells were treated with increasing concentrations of 1,25(OH)2D3 (250 pM–200 nM) in steroid-free growth medium for 72h. Error bars showing standard deviation. Experiment was performed at n = 3. Number of replicates: 1. (B) TCam-2, NT2D1, 2102EP and NCCIT cells were treated with increasing concentrations of 1,25(OH)2D3 (50–200 nM) in normal growth medium for 24 h in absence (left panel) or presence (right panel) of 100 nM ATRA. (A,B) Cell growth was assessed with WST-1 assay.
Figure 6. Stimulation with 1,25(OH2)D3 in seminomatous (TCam-2) and non-seminomatous (NT2D1, 2102EP, NCCIT) TGCT cell lines did not result in reduced proliferation. (A) TCam-2, NT2D1, 2102EP and NCCIT cells were treated with increasing concentrations of 1,25(OH)2D3 (250 pM–200 nM) in steroid-free growth medium for 72h. Error bars showing standard deviation. Experiment was performed at n = 3. Number of replicates: 1. (B) TCam-2, NT2D1, 2102EP and NCCIT cells were treated with increasing concentrations of 1,25(OH)2D3 (50–200 nM) in normal growth medium for 24 h in absence (left panel) or presence (right panel) of 100 nM ATRA. (A,B) Cell growth was assessed with WST-1 assay.
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Figure 7. mRNA expression of vitamin D regulatory genes in TCGA’s TGCT dataset. Analysis comprises anabolic (CYP2R1, CYP27A1 and CYP27B1) and catabolic (CYP24A1) enzymes, as well as positive (PTHLH, IFNG, and TNF) and negative (FGF23) feedback regulators. Heatmap generated via R package heatmap using correlation Pearson clustering algorithm.
Figure 7. mRNA expression of vitamin D regulatory genes in TCGA’s TGCT dataset. Analysis comprises anabolic (CYP2R1, CYP27A1 and CYP27B1) and catabolic (CYP24A1) enzymes, as well as positive (PTHLH, IFNG, and TNF) and negative (FGF23) feedback regulators. Heatmap generated via R package heatmap using correlation Pearson clustering algorithm.
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Table
Table 1. Amplified genes on 12p that could be implicated in testicular carcinogenesis. OnkoKBTM cancer genes with copy number aberrations (amplifications) localized on chromosome 12p retrieved from Genie cohort of male GCTs with following histology subtypes: mixed GCT, seminoma, NSGCT, yolk sac tumor, embryonal carcinoma, all teratomas and choriocarcinoma. Total profiled samples: 702. Number of samples with CNA, number of total samples profiled, and resulting percentage are reported.
Table 1. Amplified genes on 12p that could be implicated in testicular carcinogenesis. OnkoKBTM cancer genes with copy number aberrations (amplifications) localized on chromosome 12p retrieved from Genie cohort of male GCTs with following histology subtypes: mixed GCT, seminoma, NSGCT, yolk sac tumor, embryonal carcinoma, all teratomas and choriocarcinoma. Total profiled samples: 702. Number of samples with CNA, number of total samples profiled, and resulting percentage are reported.
GeneDescriptionCytobandSamples with CNASamples ProfiledFrequency of CNA
CCND2Cyclin D2, cell cycle regulator12p13.3214270120.3%
CDKN1Bp27KIP1, inhibitor of cyclin D-CDK4 complexes12p13.116370123.3%
CHD4Helicase, epigenetic transcriptional repression12p13.311520.0%
ETV6ETS family transcription factor12p13.213469819.2%
FGF23Growth factor, phosphate homeostasis12p13.321616.7%
FGF6Growth factor controlling cell proliferation/differentiation12p13.321616.7%
H3F3CHistone of the H3 family12p11.2110359417.3%
KDM5ADemethylase of Lysine 4 of histone H312p13.3312263819.1%
KRASProto-oncogene, small GTPase12p12.113570219.2%
PIK3C2GMember of the phosphoinositide 3-kinase family12p12.310259917.0%
PTPN6Protein tyrosine phosphatase12p13.3111100.0%
PTPROReceptor-type protein tyrosine phosphatase12p12.3|12p13-p1211100.0%
RAD52DNA repair12p13.3313063720.4%
RECQLHelicase involved in DNA repair12p12.15830019.3%
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Törzsök, P.; Van Goubergen, J.; Pichler, M.; Pichler, R.; Santer, F.R. Isochromosome 12p Formation Regulates Vitamin D Metabolism in Testicular Cancer. Nutrients 2023, 15, 2384. https://doi.org/10.3390/nu15102384

AMA Style

Törzsök P, Van Goubergen J, Pichler M, Pichler R, Santer FR. Isochromosome 12p Formation Regulates Vitamin D Metabolism in Testicular Cancer. Nutrients. 2023; 15(10):2384. https://doi.org/10.3390/nu15102384

Chicago/Turabian Style

Törzsök, Peter, Jasper Van Goubergen, Martin Pichler, Renate Pichler, and Frédéric R. Santer. 2023. "Isochromosome 12p Formation Regulates Vitamin D Metabolism in Testicular Cancer" Nutrients 15, no. 10: 2384. https://doi.org/10.3390/nu15102384

APA Style

Törzsök, P., Van Goubergen, J., Pichler, M., Pichler, R., & Santer, F. R. (2023). Isochromosome 12p Formation Regulates Vitamin D Metabolism in Testicular Cancer. Nutrients, 15(10), 2384. https://doi.org/10.3390/nu15102384

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