Detecting Harmful Algae Blooms (HABs) on the Ohio River Using Landsat and Google Earth Engine
Highlights
- Satellite analysis revealed the 2015 Ohio River HAB event affected 636.5 river miles, representing a more than 20-fold increase compared to the 30-mile extent detected through ground-based monitoring alone.
- The ensemble machine learning approach combining Support Vector Regression, Neural Networks, and Extreme Gradient Boosting achieved a correlation coefficient of 0.85 with ground-truth measurements, demonstrating operational reliability for large river systems.
- This study provides a validated operational framework for integrating satellite-based HAB monitoring with existing ground-based surveillance systems in large river environments.
- The quantitative relationships between environmental factors and bloom development provide essential tools for climate change adaptation planning and future HAB risk assessment.
Abstract
1. Introduction
1.1. Background and Significance
1.2. Current Monitoring Approaches and Limitations
1.3. Remote Sensing Applications for Monitoring HABs
2. Materials and Methods
2.1. Study Area and Data Sources
- Microcystin concentration (μg/L) via enzyme-linked immunosorbent assay (ELISA);
- Chlorophyll-a levels via fluorometric analysis;
- Water temperature (°C);
- Dissolved oxygen (mg/L);
- Turbidity (NTU);
- Flow velocity (m/s).
2.2. Satellite Data Acquisition and Processing
2.2.1. Landsat 7 and 8 Imagery Selection
- Temporal compositing: Combining multiple overpasses within 8-day windows to fill spatial gaps;
- Multi-path coverage: The Ohio River spans four path/row combinations (paths 17–18, rows 32–33), providing overlapping coverage that minimizes gap impacts;
- Selective scene use: SLC gaps were evaluated on a scene-by-scene basis, with scenes retained when gaps did not affect the active river channel;
- Gap interpolation: For narrow SLC gaps (<2 pixels) crossing the river, linear interpolation from adjacent valid pixels was applied.
- Band 1 (Blue): 450–520 nm
- Band 2 (Green): 520–600 nm
- Band 3 (Red): 630–690 nm
- Band 4 (Near-Infrared, NIR): 770–900 nm
- Band 5 (Shortwave Infrared 1, SWIR1): 1550–1750 nm
- Band 7 (Shortwave Infrared 2, SWIR2): 2090–2350 nm
- Band 2 (Blue): 450–510 nm
- Band 3 (Green): 530–590 nm
- Band 4 (Red): 640–670 nm
- Band 5 (Near-Infrared, NIR): 850–880 nm
- Band 6 (Shortwave Infrared 1, SWIR1): 1570–1650 nm
- Band 7 (Shortwave Infrared 2, SWIR2): 2110–2290 nm
- Cloud coverage < 20% over study area
- Solar zenith angle < 60° (to minimize sun glint)
- No sensor anomalies or data quality issues flagged in QA bands
- For Landsat 7: SLC gaps not intersecting primary river corridor
- Temporal coincidence within ±3 days of ground sampling when available
- NIR: L7_harmonized = 0.9723 × L7_original + 0.0005
- Red: L7_harmonized = 0.9237 × L7_original + 0.0034
- SWIR1: L7_harmonized = 0.9548 × L7_original + 0.0022
2.2.2. Atmospheric Correction
- Rayleigh scattering (molecular atmosphere);
- Aerosol scattering and absorption;
- Water vapor absorption;
- Ozone absorption.
2.2.3. Adjacency Effect Considerations
- Buffer exclusion: Water pixels within 90 m (3 Landsat pixels) of land boundaries were excluded from analysis;
- Narrow section masking: River sections < 270 m width had insufficient valid water pixels after buffering and were excluded, creating data gaps representing ~18% of total river length;
- Visual inspection: Remaining pixels were visually inspected for anomalous brightness suggesting residual land contamination.
2.3. Google Earth Engine Implementation
2.3.1. Study Area Definition
2.3.2. Image Collection and Filtering
2.3.3. Mosaicking and Compositing
2.4. Spectral Index Calculation
2.4.1. Floating Algae Index (FAI)
- R_red = Band 4
- R_NIR = Band 5
- R_SWIR1 = Band 6
2.4.2. Normalized Difference Chlorophyll Index (NDCI)
- R_red = Band 4 (640–670 nm)
- R_NIR = Band 5 (850–880 nm)
2.5. Machine Learning Model Development
2.5.1. Model Architecture
- Kernel: Radial basis function (RBF)
- Regularization parameter (C): 100
- Kernel coefficient (γ): 0.001
- Epsilon: 0.1
- Architecture: 8 input features → 50 neurons (hidden layer 1) → 25 neurons (hidden layer 2) → 1 output
- Activation function: Rectified Linear Unit (ReLU)
- Solver: Adam optimizer
- Learning rate: 0.001
- Max iterations: 500
- Number of estimators: 100
- Maximum tree depth: 5
- Learning rate: 0.1
- Subsample ratio: 0.8
2.5.2. Input Features
- Blue reflectance (Band 2)
- Green reflectance (Band 3)
- Red reflectance (Band 4)
- NIR reflectance (Band 5)
- SWIR1 reflectance (Band 6)
- SWIR2 reflectance (Band 7)
- FAI (calculated)
- NDCI (calculated)
2.5.3. Target Variable
2.5.4. Training and Validation Approach
- Training period: 15 August–15 September 2015 (n = 62 matched satellite-ground pairs)
- Testing period: 16 September–30 September 2015 (n = 26 matched satellite-ground pairs)
- Training performance: assessed via 5-fold cross-validation within the training period
- Testing performance: assessed on the completely independent 16–30 September test period
- Overfitting assessment: quantified as the difference between training and testing R2 values, with differences < 0.05 considered acceptable
2.5.5. Ensemble Method
- Weights: w_SVR, w_NN, w_XGB
- Constraint: w_SVR + w_NN + w_XGB = 1, all weights ≥ 0
- SVR: 0.25
- NN: 0.30
- XGB: 0.45
2.6. Spatio-Temporal Matching Protocol
2.6.1. Buffer-Based Matching
- Spatial uncertainty: GPS positioning error (±5–10 m) and Landsat geolocation accuracy (±30 m LE90).
- Downstream transport: With average Ohio River flow velocity of 0.5–0.8 m/s and typical 1–3-day lag between satellite overpass and ground sampling, water parcels travel 4–21 km downstream. A 5 km buffer captures approximately 50% of this transport envelope in both upstream and downstream directions.
Enhanced Dynamic Buffer Approach
- Base_buffer = 5 km (determined through optimization testing balancing spatial accuracy vs. successful matching rate)
- Flow_velocity = measured river velocity at the sampling station (m/s), obtained from ORSANCO flow records
- Time_difference = hours between Landsat overpass time and ground sample collection time
2.6.2. Pixel Extraction and Aggregation
- Median predicted microcystin (primary metric);
- Mean predicted microcystin;
- Standard deviation (spatial variability indicator);
- Number of valid pixels.
2.6.3. Temporal Constraints
2.7. Validation Metrics
- Sensitivity: True positive rate (correctly detected blooms)
- Specificity: True negative rate (correctly identified non-blooms)
2.8. Sensitivity Analyses
- Buffer size variation: Validation repeated using 1 km, 5 km, and 10 km buffer radii
- Individual vs. ensemble models: Comparison of SVR, NN, XGB, and ensemble performance
- Single-index baselines: Performance of NDCI-only and FAI-only linear regression models
3. Results
3.1. Enhanced Spatial Detection Capabilities
3.1.1. Spatial Coverage Comparison and Detection Patterns
3.1.2. Validation and Uncertainty
3.1.3. Implications for Water Resource Management
3.2. Early Warning System Development
3.2.1. Temporal Detection Sequence and Validation
3.2.2. Quantifying Temporal Advantage
3.2.3. Mechanistic Basis for Early Detection
3.2.4. Operational Implications for Water Management
3.2.5. Validation Against Historical Events
3.3. Machine Learning Integration and Analytical Performance
3.3.1. Individual Algorithm Performance
3.3.2. Ensemble Integration and Combined Performance
3.3.3. Feature Importance and Model Interpretability
3.3.4. Cross-Validation Robustness and Environmental Variability
3.4. Field Validation Results
3.4.1. Dynamic Buffer Validation Methodology
3.4.2. Spatial Validation Performance
3.4.3. Temporal Validation and Early Detection Capability
3.4.4. Environmental Relationships and Bloom Dynamics
3.4.5. Validation Accuracy Assessment and Uncertainty Analysis
- Pearson correlation coefficient: r = 0.87 (95% CI: 0.82–0.91);
- Root Mean Square Error: RMSE = 0.023 (normalized RMSE = 18%);
- Mean Absolute Error: MAE = 0.018;
- Nash-Sutcliffe Efficiency: NSE = 0.82;
- Bias: −0.003 (indicating slight underestimation tendency).
3.5. Technical Implementation and Operational Feasibility
3.5.1. Multi-Index Spectral Analysis Performance
3.5.2. Atmospheric Correction and Quality Control
3.5.3. Computational Efficiency and Scalability
3.5.4. Operational Deployment Framework
3.5.5. Integration with Existing Monitoring Systems
3.5.6. Cost-Effectiveness and Resource Optimization
4. Discussion
4.1. Methodological Limitations and Future Directions
4.1.1. Temporal and Spatial Resolution Constraints
4.1.2. Model Generalizability and Training Data
4.1.3. Atmospheric Correction and Radiometric Uncertainty
4.1.4. Detection Limitations and System-Specific Considerations
4.1.5. Future Enhancement Opportunities
- Multi-platform integration incorporating Sentinel-2 MSI (10-m resolution, 5-day revisit) could improve temporal resolution to 2–3 days, substantially reducing cloud cover impacts and enabling detection of shorter-duration events. Machine learning approaches have proven adaptable across diverse remote sensing application [48], supporting transferability to multi-platform integration.
- Enhanced atmospheric correction algorithms specifically optimized for inland waters (e.g., ACOLITE, SeaDAS, iCOR) could reduce residual uncertainties, particularly when integrated with AERONET aerosol monitoring.
- Species discrimination capabilities through additional spectral features, particularly phycocyanin-sensitive bands available on Sentinel-3 OLCI (620 nm), could improve distinction between cyanobacterial blooms and other phytoplankton assemblages. Integration of AI approaches with remote sensing has shown promise in monitoring wetland ecosystems [49], suggesting potential for adaptation to HAB species discrimination.
- Predictive modeling integration coupling satellite observations with hydrodynamic-ecological models could extend early warning beyond the current 5–7-day advantage by forecasting bloom development based on environmental drivers.
- Multi-year validation programs encompassing diverse bloom events, species compositions, and environmental conditions would strengthen confidence in model generalizability and operational reliability.
- Cross-system validation extending methodology to other major river systems (Mississippi, Columbia, Tennessee, Missouri) would test generalizability while building robust multi-system training datasets.
4.2. Implications for Water Resource Management
4.2.1. Public Health Protection and Operational Integration
4.2.2. Economic Efficiency and Strategic Watershed Management
4.2.3. Climate Change Adaptation and Long-Term Planning
4.3. Scientific Contributions and Broader Context
4.3.1. Advances in Riverine HAB Understanding
4.3.2. Methodological Advances and Framework Contributions
4.3.3. Integration Across Scales and Future Research Directions
- Multi-system validation testing methodology generalizability across diverse river systems with different hydrodynamic characteristics, optical properties, and bloom species composition.
- Species-specific detection and toxin prediction through integration of phycocyanin-sensitive spectral features and machine learning approaches utilizing full spectral signatures [49].
- Predictive modeling integration coupling satellite observations with hydrodynamic-ecological models to extend early warning capabilities beyond current 5–7-day detection advantage.
- Enhanced atmospheric correction and radiometric validation through dedicated campaigns with coincident optical measurements.
- High-frequency temporal monitoring integrating multiple satellite platforms (Landsat 8/9, Sentinel-2A/B, Sentinel-3A/B) to achieve 2–3-day temporal resolution [48].
- Long-term trend analysis applying methodology to historical Landsat archives (1984−present) to reveal temporal changes in HAB frequency, intensity, and spatial distribution.
5. Conclusions
Author Contributions
Funding
Data Availability Statement
Acknowledgments
Conflicts of Interest
Abbreviations
| CDOM | Carbon Dissolved Organic Matter |
| CNN | Convolutional Neural Network |
| ECCC | Environment and Climate Change Canada |
| ELISA | Enzyme-Linked Immunosorbent Assay |
| EPA | Environmental Protection Agency |
| FAI | Floating Algae Index |
| HAB | Harmful Algae Bloom |
| HIS | Hyperspectral Imaging |
| L&D | Locks and Dam |
| LC-MS/MS | Liquid Chromatography with tandem Mass Spectrometry |
| LSTM | Long Short-Term Memory |
| MERIS | Medium Resolution Imaging Spectrometer |
| MODIS | Moderate Resolution Imaging Spectroradiometer |
| MSS | Multispectral Scanner |
| NDCI | Normalized Difference Chlorophyll Index |
| NOAA | National Oceanic and Atmospheric Administration |
| OLCI | Ocean and Land Colour instrument |
| ORM | Ohio River Mile |
| ORSANCO | Ohio River Valley Water Sanitation Commission |
| RM | River Mile |
| Rrs | Remote Sensing Reflectance |
| SPATT | Solid Phase Absorption Toxin Tracking |
| SVM | Support Vector Machine |
| TDI | Toxin Diversity Index |
| UAS | Unmanned Aircraft System |
Appendix A
Appendix A.1
| ```javascript var collection = ee.ImageCollection(‘LANDSAT/LC08/C02/T1_L2’) .filterBounds(studyArea) .filterDate(‘2015-08-15’, ‘2015-09-30’) .filter(ee.Filter.lt(‘CLOUD_COVER’, 70)) .map(applyScaleFactors) .map(maskClouds); ``` |
Appendix A.2
| ```javascript function enhancedWaterMask(image) { var ndwi = image.normalizedDifference([‘GREEN’, ‘NIR’]); var turbidityMask = image.normalizedDifference([‘RED’, ‘GREEN’]); var combinedMask = ndwi.gt(0.1).and(turbidityMask.lt(0.2)); return image.updateMask(combinedMask); } ``` |
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Kaiser, D.; Qu, J.J. Detecting Harmful Algae Blooms (HABs) on the Ohio River Using Landsat and Google Earth Engine. Remote Sens. 2025, 17, 4010. https://doi.org/10.3390/rs17244010
Kaiser D, Qu JJ. Detecting Harmful Algae Blooms (HABs) on the Ohio River Using Landsat and Google Earth Engine. Remote Sensing. 2025; 17(24):4010. https://doi.org/10.3390/rs17244010
Chicago/Turabian StyleKaiser, Douglas, and John J. Qu. 2025. "Detecting Harmful Algae Blooms (HABs) on the Ohio River Using Landsat and Google Earth Engine" Remote Sensing 17, no. 24: 4010. https://doi.org/10.3390/rs17244010
APA StyleKaiser, D., & Qu, J. J. (2025). Detecting Harmful Algae Blooms (HABs) on the Ohio River Using Landsat and Google Earth Engine. Remote Sensing, 17(24), 4010. https://doi.org/10.3390/rs17244010

