Climate-Smart Forestry and Its Strong Correlation with Forest Genetic Resources: Current State and Future Actions
Abstract
1. Introduction
1.1. Background
1.2. Literature Review Approach
2. The Significant Role of Forest Genetic Resources in Climate-Smart Forestry
3. Forest Tree Genetic Breeding
4. The Role of Forest Management Practices on the Forest Genetic Resources
5. Adaptation to Different Environments
6. Migration
7. Phenotypic Plasticity
8. Climate Change and Forest Genetic Resources
9. Selection and Breeding Actions
10. Selection of Species and Reproductive Genetic Material
11. Strategies for Integrating FGR into Climate-Smart Forestry
12. Risks, Uncertainties and Ethical Considerations
13. Conclusions
Author Contributions
Funding
Data Availability Statement
Conflicts of Interest
Abbreviations
| CSF | Climate-Smart Forestry |
| FGR | Forest Genetic Resources |
| GP | Genomic Prediction |
| AGF | Assisted Gene Flow |
| MAS | Marker-Assisted Selection |
| MAB | Marker-Assisted Breeding |
| GWSS | Genome-Wide Selection |
| GEA | Genotype-Environment Association |
References
- Schoene, D.H.; Bernier, P.Y. Adapting forestry and forests to climate change: A challenge to change the paradigm. For. Policy Econ. 2012, 24, 12–19. [Google Scholar] [CrossRef]
- Stocker, T.F.; Qin, D.; Plattner, G.-K.; Tignor, M.M.; Allen, S.K.; Boschung, J.; Nauels, A.; Xia, Y.; Bex, V.; Midgley, P.M. Climate Change 2013: The Physical Science Basis. Contribution of Working Group I to the Fifth Assessment Report of IPCC the Intergovernmental Panel on Climate Change; The Intergovernmental Panel on Climate Change (IPCC): Geneva, Switzerland, 2014. [Google Scholar]
- Bernier, P.; Schoene, D. Adapting Forests and Their Management to Climate Change: An Overiew; Food and Agriculture Organization: Rome, Italy, 2009. [Google Scholar]
- Seppälä, R. A global assessment on adaptation of forests to climate change. Scand. J. For. Res. 2009, 24, 469–472. [Google Scholar] [CrossRef]
- Lucier, A.; Ayres, M.; Karnosky, D.; Thompson, I.; Loehle, C.; Percy, K.; Sohngen, B. Forest responses and vulnerabilities to recent climate change. In IUFRO World Series; The International Union of Forest Research Organizations (IUFRO): Vienna, Austria, 2009. [Google Scholar]
- Kelly, A.E.; Goulden, M.L. Rapid shifts in plant distribution with recent climate change. Proc. Natl. Acad. Sci. USA 2008, 105, 11823–11826. [Google Scholar] [CrossRef] [PubMed]
- Lenoir, J.; Gégout, J.-C.; Dupouey, J.-L.; Bert, D.; Svenning, J.C. Forest plant community changes during 1989–2007 in response to climate warming in the Jura Mountains (France and Switzerland). J. Veg. Sci. 2010, 21, 949–964. [Google Scholar] [CrossRef]
- Allen, C.D.; Macalady, A.K.; Chenchouni, H.; Bachelet, D.; McDowell, N.; Vennetier, M.; Kitzberger, T.; Rigling, A.; Breshears, D.D.; Hogg, E.T. A global overview of drought and heat-induced tree mortality reveals emerging climate change risks for forests. For. Ecol. Manag. 2010, 259, 660–684. [Google Scholar] [CrossRef]
- Doyle, T.W.; Krauss, K.W.; Conner, W.H.; From, A.S. Predicting the retreat and migration of tidal forests along the northern Gulf of Mexico under sea-level rise. For. Ecol. Manag. 2010, 259, 770–777. [Google Scholar] [CrossRef]
- Di Nitto, D.; Neukermans, G.; Koedam, N.; Defever, H.; Pattyn, F.; Kairo, J.G.; Dahdouh-Guebas, F. Mangroves facing climate change: Landward migration potential in response to projected scenarios of sea level rise. Biogeosciences 2014, 11, 857–871. [Google Scholar] [CrossRef]
- Corlett, R.T. Impacts of warming on tropical lowland rainforests. Trends Ecol. Evol. 2011, 26, 606–613. [Google Scholar] [CrossRef]
- Huntingford, C.; Zelazowski, P.; Galbraith, D.; Mercado, L.M.; Sitch, S.; Fisher, R.; Lomas, M.; Walker, A.P.; Jones, C.D.; Booth, B.B. Simulated resilience of tropical rainforests to CO2-induced climate change. Nat. Geosci. 2013, 6, 268–273. [Google Scholar] [CrossRef]
- Feeley, K.J.; Rehm, E.M.; Machovina, B. Perspective: The responses of tropical forest species to global climate change: Acclimate, adapt, migrate, or go extinct? Front. Biogeogr. 2012, 4, 69–82. [Google Scholar] [CrossRef]
- Choat, B.; Jansen, S.; Brodribb, T.J.; Cochard, H.; Delzon, S.; Bhaskar, R.; Bucci, S.J.; Feild, T.S.; Gleason, S.M.; Hacke, U.G. Global convergence in the vulnerability of forests to drought. Nature 2012, 491, 752–755. [Google Scholar] [CrossRef]
- Hughes, L. Biological consequences of global warming: Is the signal already apparent? Trends Ecol. Evol. 2000, 15, 56–61. [Google Scholar] [CrossRef] [PubMed]
- Parry, M.L. Technical Summary. Climate Change 2007. Impacts, Adaptation and Vulnerability. Contribution of Working Group II to the Fourth Assessment Report of the Intergovernmental Panel on Climate Change 2007, 23–78. Available online: https://www.ipcc.ch/site/assets/uploads/2018/03/ar4_wg2_full_report.pdf (accessed on 10 December 2025).
- Davis, M.B.; Shaw, R.G. Range shifts and adaptive responses to Quaternary climate change. Science 2001, 292, 673–679. [Google Scholar] [CrossRef] [PubMed]
- Hansen, J.; Sato, M.; Ruedy, R.; Lo, K.; Lea, D.W.; Medina-Elizade, M. Global temperature change. Proc. Natl. Acad. Sci. USA 2006, 103, 14288–14293. [Google Scholar] [CrossRef] [PubMed]
- Hannah, L. Biodiversity and climate change in context. In Climate Change and Biodiversity; Yale University Press: New Haven, CT, USA, 2005. [Google Scholar]
- Dullinger, S.; Dirnböck, T.; Grabherr, G. Modelling climate change-driven treeline shifts: Relative effects of temperature increase, dispersal and invasibility. J. Ecol. 2004, 92, 241–252. [Google Scholar] [CrossRef]
- Lovejoy, T.E. Climate Change and Biodiversity; The Energy and Resources Institute (TERI): New Delhi, India, 2006. [Google Scholar]
- Savolainen, O.; Lascoux, M.; Merilä, J. Ecological genomics of local adaptation. Nat. Rev. Genet. 2013, 14, 807–820. [Google Scholar] [CrossRef]
- Howe, G.T.; Brunner, A.M.; De la Barrera, E.; Andrade, J.L. An evolving approach to understanding plant adaptation. New Phytol. 2005, 167, 1–5. [Google Scholar] [CrossRef]
- Brunner, A.M.; DiFazio, S.P.; Groover, A.T. Forest genomics grows up and branches out. New Phytol. 2007, 174, 710–713. [Google Scholar] [CrossRef]
- Neale, D.B.; Kremer, A. Forest tree genomics: Growing resources and applications. Nat. Rev. Genet. 2011, 12, 111–122. [Google Scholar] [CrossRef]
- Khan, M.A.; Korban, S.S. Association mapping in forest trees and fruit crops. J. Exp. Bot. 2012, 63, 4045–4060. [Google Scholar] [CrossRef]
- Tuskan, G.A.; Groover, A.T.; Schmutz, J.; DiFazio, S.P.; Myburg, A.; Grattapaglia, D.; Smart, L.B.; Yin, T.; Aury, J.-M.; Kremer, A. Hardwood tree genomics: Unlocking woody plant biology. Front. Plant Sci. 2018, 9, 1799. [Google Scholar] [CrossRef]
- Flanagan, S.P.; Forester, B.R.; Latch, E.K.; Aitken, S.N.; Hoban, S. Guidelines for planning genomic assessment and monitoring of locally adaptive variation to inform species conservation. Evol. Appl. 2018, 11, 1035–1052. [Google Scholar] [CrossRef]
- Scherer, L.; Svenning, J.-C.; Huang, J.; Seymour, C.L.; Sandel, B.; Mueller, N.; Kummu, M.; Bekunda, M.; Bruelheide, H.; Hochman, Z. Global priorities of environmental issues to combat food insecurity and biodiversity loss. Sci. Total Environ. 2020, 730, 139096. [Google Scholar] [CrossRef]
- Grattapaglia, D.; Silva-Junior, O.B.; Resende, R.T.; Cappa, E.P.; Müller, B.S.; Tan, B.; Isik, F.; Ratcliffe, B.; El-Kassaby, Y.A. Quantitative genetics and genomics converge to accelerate forest tree breeding. Front. Plant Sci. 2018, 9, 1693. [Google Scholar] [CrossRef] [PubMed]
- Nystedt, B.; Street, N.R.; Wetterbom, A.; Zuccolo, A.; Lin, Y.-C.; Scofield, D.G.; Vezzi, F.; Delhomme, N.; Giacomello, S.; Alexeyenko, A. The Norway spruce genome sequence and conifer genome evolution. Nature 2013, 497, 579–584. [Google Scholar] [CrossRef]
- Burdon, R.D.; Klápště, J. Alternative selection methods and explicit or implied economic-worth functions for different traits in tree breeding. Tree Genet. Genomes 2019, 15, 79. [Google Scholar] [CrossRef]
- Li, Y.; Klápště, J.; Telfer, E.; Wilcox, P.; Graham, N.; Macdonald, L.; Dungey, H.S. Genomic selection for non-key traits in radiata pine when the documented pedigree is corrected using DNA marker information. BMC Genom. 2019, 20, 1026. [Google Scholar] [CrossRef] [PubMed]
- Nabuurs, G.-J.; Delacote, P.; Ellison, D.; Hanewinkel, M.; Hetemäki, L.; Lindner, M. By 2050 the mitigation effects of EU forests could nearly double through climate smart forestry. Forests 2017, 8, 484. [Google Scholar] [CrossRef]
- Bridle, J.R.; Polechová, J.; Kawata, M.; Butlin, R.K. Why is adaptation prevented at ecological margins? New insights from individual-based simulations. Ecol. Lett. 2010, 13, 485–494. [Google Scholar] [CrossRef]
- Yousefpour, R.; Augustynczik, A.L.D.; Reyer, C.P.; Lasch-Born, P.; Suckow, F.; Hanewinkel, M. Realizing mitigation efficiency of European commercial forests by climate smart forestry. Sci. Rep. 2018, 8, 345. [Google Scholar] [CrossRef]
- Jandl, R.; Ledermann, T.; Kindermann, G.; Freudenschuss, A.; Gschwantner, T.; Weiss, P. Strategies for climate-smart forest management in Austria. Forests 2018, 9, 592. [Google Scholar] [CrossRef]
- Bele, M.Y.; Sonwa, D.J.; Tiani, A.-M. Adapting the Congo Basin forests management to climate change: Linkages among biodiversity, forest loss, and human well-being. For. Policy Econ. 2015, 50, 1–10. [Google Scholar] [CrossRef]
- Roe, S.; Streck, C.; Obersteiner, M.; Frank, S.; Griscom, B.; Drouet, L.; Fricko, O.; Gusti, M.; Harris, N.; Hasegawa, T. Contribution of the land sector to a 1.5 C world. Nat. Clim. Change 2019, 9, 817–828. [Google Scholar] [CrossRef]
- Curtis, P.G.; Slay, C.M.; Harris, N.L.; Tyukavina, A.; Hansen, M.C. Classifying drivers of global forest loss. Science 2018, 361, 1108–1111. [Google Scholar] [CrossRef] [PubMed]
- Liang, J.; Crowther, T.W.; Picard, N.; Wiser, S.; Zhou, M.; Alberti, G.; Schulze, E.-D.; McGuire, A.D.; Bozzato, F.; Pretzsch, H. Positive biodiversity-productivity relationship predominant in global forests. Science 2016, 354, aaf8957. [Google Scholar] [CrossRef]
- Jactel, H.; Bauhus, J.; Boberg, J.; Bonal, D.; Castagneyrol, B.; Gardiner, B.; Gonzalez-Olabarria, J.R.; Koricheva, J.; Meurisse, N.; Brockerhoff, E.G. Tree diversity drives forest stand resistance to natural disturbances. Curr. For. Rep. 2017, 3, 223–243. [Google Scholar] [CrossRef]
- Astrup, R.; Bernier, P.Y.; Genet, H.; Lutz, D.A.; Bright, R.M. A sensible climate solution for the boreal forest. Nat. Clim. Change 2018, 8, 11–12. [Google Scholar] [CrossRef]
- Iwasaki, M.; Paszkowski, J. Epigenetic memory in plants. EMBO J. 2014, 33, 1987–1998. [Google Scholar] [CrossRef]
- Zhao, J.; Lu, Z.; Wang, L.; Jin, B. Plant responses to heat stress: Physiology, transcription, noncoding RNAs, and epigenetics. Int. J. Mol. Sci. 2020, 22, 117. [Google Scholar] [CrossRef]
- García-García, I.; Méndez-Cea, B.; Martín-Gálvez, D.; Seco, J.I.; Gallego, F.J.; Linares, J.C. Challenges and perspectives in the epigenetics of climate change-induced forests decline. Front. Plant Sci. 2022, 12, 797958. [Google Scholar] [CrossRef]
- Miryeganeh, M. Plants’ epigenetic mechanisms and abiotic stress. Genes 2021, 12, 1106. [Google Scholar] [CrossRef]
- Meyer, P. Epigenetic variation and environmental change. J. Exp. Bot. 2015, 66, 3541–3548. [Google Scholar] [CrossRef]
- Scott, M.F.; Ladejobi, O.; Amer, S.; Bentley, A.R.; Biernaskie, J.; Boden, S.A.; Clark, M.; Dell’Acqua, M.; Dixon, L.E.; Filippi, C.V. Multi-parent populations in crops: A toolbox integrating genomics and genetic mapping with breeding. Heredity 2020, 125, 396–416. [Google Scholar] [CrossRef]
- Schilthuizen, M.; Hoekstra, R.F.; Gittenberger, E. Hybridization, rare alleles and adaptive radiation. Trends Ecol. Evol. 2004, 19, 404–405. [Google Scholar] [CrossRef]
- Seehausen, O. Hybridization and adaptive radiation. Trends Ecol. Evol. 2004, 19, 198–207. [Google Scholar] [CrossRef]
- Burkhart, H.E.; Brunner, A.M.; Stanton, B.J.; Shuren, R.A.; Amateis, R.L.; Creighton, J.L. An assessment of potential of hybrid poplar for planting in the Virginia Piedmont. New For. 2017, 48, 479–490. [Google Scholar] [CrossRef]
- Cipollini, M.; Dingley, N.R.; Felch, P.; Maddox, C. Evaluation of phenotypic traits and blight-resistance in an American chestnut backcross orchard in Georgia. Glob. Ecol. Conserv. 2017, 10, 1–8. [Google Scholar] [CrossRef]
- Badenes, M.L.; Fernandez i Marti, A.; Ríos, G.; Rubio-Cabetas, M.J. Application of genomic technologies to the breeding of trees. Front. Genet. 2016, 7, 198. [Google Scholar] [CrossRef]
- Butcher, P.; Southerton, S. Marker-assisted selection in forestry species. In Marker-Assisted Selection, Current Status and Future Perspectives in Crops, Livestock, Forestry and Fish; Food and Agriculture Organization: Rome, Italy, 2007; pp. 283–305. [Google Scholar]
- Muranty, H.; Jorge, V.; Bastien, C.; Lepoittevin, C.; Bouffier, L.; Sanchez, L. Potential for marker-assisted selection for forest tree breeding: Lessons from 20 years of MAS in crops. Tree Genet. Genomes 2014, 10, 1491–1510. [Google Scholar] [CrossRef]
- Herzog, E.; Frisch, M. Selection strategies for marker-assisted backcrossing with high-throughput marker systems. Theor. Appl. Genet. 2011, 123, 251–260. [Google Scholar] [CrossRef]
- Doudna, J.A.; Charpentier, E. The new frontier of genome engineering with CRISPR-Cas9. Science 2014, 346, 1258096. [Google Scholar] [CrossRef]
- Dort, E.N.; Tanguay, P.; Hamelin, R.C. CRISPR/Cas9 gene editing: An unexplored frontier for forest pathology. Front. Plant Sci. 2020, 11, 1126. [Google Scholar] [CrossRef]
- Campbell, M.M.; Brunner, A.M.; Jones, H.M.; Strauss, S.H. Forestry’s fertile crescent: The application of biotechnology to forest trees. Plant Biotechnol. J. 2003, 1, 141–154. [Google Scholar] [CrossRef]
- Pereira-Lorenzo, S.; Ramos-Cabrer, A.M.; Barreneche, T.; Mattioni, C.; Villani, F.; Díaz-Hernández, B.; Martín, L.M.; Robles-Loma, A.; Cáceres, Y.; Martín, A. Instant domestication process of European chestnut cultivars. Ann. Appl. Biol. 2019, 174, 74–85. [Google Scholar] [CrossRef]
- Cortés, A.J.; Skeen, P.; Blair, M.W.; Chacón-Sánchez, M.I. Does the genomic landscape of species divergence in Phaseolus beans coerce parallel signatures of adaptation and domestication? Front. Plant Sci. 2018, 9, 1816. [Google Scholar] [CrossRef]
- Barghi, N.; Hermisson, J.; Schlötterer, C. Author Correction: Polygenic adaptation: A unifying framework to understand positive selection. Nat. Rev. Genet. 2020, 21, 782. [Google Scholar] [CrossRef]
- Boyle, E.A.; Li, Y.I.; Pritchard, J.K. An expanded view of complex traits: From polygenic to omnigenic. Cell 2017, 169, 1177–1186. [Google Scholar] [CrossRef]
- Desta, Z.A.; Ortiz, R. Genomic selection: Genome-wide prediction in plant improvement. Trends Plant Sci. 2014, 19, 592–601. [Google Scholar] [CrossRef]
- Crossa, J.; Pérez-Rodríguez, P.; Cuevas, J.; Montesinos-López, O.; Jarquín, D.; De Los Campos, G.; Burgueño, J.; González-Camacho, J.M.; Pérez-Elizalde, S.; Beyene, Y. Genomic selection in plant breeding: Methods, models, and perspectives. Trends Plant Sci. 2017, 22, 961–975. [Google Scholar] [CrossRef]
- De Los Campos, G.; Hickey, J.M.; Pong-Wong, R.; Daetwyler, H.D.; Calus, M.P. Whole-genome regression and prediction methods applied to plant and animal breeding. Genetics 2013, 193, 327–345. [Google Scholar] [CrossRef]
- Kelleher, C.T.; Wilkin, J.; Zhuang, J.; Cortés, A.J.; Quintero, Á.L.P.; Gallagher, T.F.; Bohlmann, J.; Douglas, C.J.; Ellis, B.E.; Ritland, K. SNP discovery, gene diversity, and linkage disequilibrium in wild populations of Populus tremuloides. Tree Genet. Genomes 2012, 8, 821–829. [Google Scholar] [CrossRef]
- Suontama, M.; Klápště, J.; Telfer, E.; Graham, N.; Stovold, T.; Low, C.; McKinley, R.; Dungey, H. Efficiency of genomic prediction across two Eucalyptus nitens seed orchards with different selection histories. Heredity 2019, 122, 370–379. [Google Scholar] [CrossRef]
- Thistlethwaite, F.R.; Ratcliffe, B.; Klápště, J.; Porth, I.; Chen, C.; Stoehr, M.U.; El-Kassaby, Y.A. Genomic selection of juvenile height across a single-generational gap in Douglas-fir. Heredity 2019, 122, 848–863. [Google Scholar] [CrossRef]
- Roudbar, M.A.; Momen, M.; Mousavi, S.F.; Ardestani, S.S.; Lopes, F.B.; Gianola, D.; Khatib, H. Genome-wide methylation prediction of biological age using reproducing kernel Hilbert spaces and Bayesian ridge regressions. bioRxiv 2020. [Google Scholar] [CrossRef]
- Lenz, P.R.; Nadeau, S.; Mottet, M.J.; Perron, M.; Isabel, N.; Beaulieu, J.; Bousquet, J. Multi-trait genomic selection for weevil resistance, growth, and wood quality in Norway spruce. Evol. Appl. 2020, 13, 76–94. [Google Scholar] [CrossRef]
- Technow, F.; Schrag, T.A.; Schipprack, W.; Bauer, E.; Simianer, H.; Melchinger, A.E. Genome properties and prospects of genomic prediction of hybrid performance in a breeding program of maize. Genetics 2014, 197, 1343–1355. [Google Scholar] [CrossRef]
- Cros, D.; Bocs, S.; Riou, V.; Ortega-Abboud, E.; Tisné, S.; Argout, X.; Pomiès, V.; Nodichao, L.; Lubis, Z.; Cochard, B. Genomic preselection with genotyping-by-sequencing increases performance of commercial oil palm hybrid crosses. BMC Genom. 2017, 18, 839. [Google Scholar] [CrossRef]
- O’Hara, K.L. What is close-to-nature silviculture in a changing world? For. Int. J. For. Res. 2016, 89, 1–6. [Google Scholar] [CrossRef]
- Ratnam, W.; Rajora, O.P.; Finkeldey, R.; Aravanopoulos, F.; Bouvet, J.-M.; Vaillancourt, R.E.; Kanashiro, M.; Fady, B.; Tomita, M.; Vinson, C. Genetic effects of forest management practices: Global synthesis and perspectives. For. Ecol. Manag. 2014, 333, 52–65. [Google Scholar] [CrossRef]
- Szmyt, J.; Dering, M. Adaptive Silviculture and Climate Change—A Forced Marriage of the 21st Century? Sustainability 2024, 16, 2703. [Google Scholar] [CrossRef]
- Geburek, T. Genetic diversity in forest trees—Its importance and potential human impact. In Conservation and Management of Forest Genetic Resources in Europe; Arbora Publishers: Zvolen, Slovakia, 2005; pp. 437–463. [Google Scholar]
- Konnert, M.; Hosius, B. Contribution of forest genetics for a sustainable forest management. Forstarchiv 2010, 81, 170–174. [Google Scholar]
- Diaci, J.; Rozenbergar, D.; Fidej, G.; Nagel, T.A. Challenges for uneven-aged silviculture in restoration of post-disturbance forests in Central Europe: A synthesis. Forests 2017, 8, 378. [Google Scholar] [CrossRef]
- Hosius, B.; Leinemann, L.; Konnert, M.; Bergmann, F. Genetic aspects of forestry in the Central Europe. Eur. J. For. Res. 2006, 125, 407–417. [Google Scholar] [CrossRef]
- Kerr, G.; Haufe, J. Thinning Practice: A Silvicultural Guide; Forestry Commission: Namsos, Norway, 2011. [Google Scholar]
- Danusevicius, D.; Kerpauskaite, V.; Kavaliauskas, D.; Fussi, B.; Konnert, M.; Baliuckas, V. The effect of tending and commercial thinning on the genetic diversity of Scots pine stands. Eur. J. For. Res. 2016, 135, 1159–1174. [Google Scholar] [CrossRef]
- Manetti, M.C.; Becagli, C.; Sansone, D.; Pelleri, F. Tree-oriented silviculture: A new approach for coppice stands. iForest-Biogeosci. For. 2016, 9, 791. [Google Scholar] [CrossRef]
- Finkeldey, R.; Ziehe, M. Genetic implications of silvicultural regimes. For. Ecol. Manag. 2004, 197, 231–244. [Google Scholar] [CrossRef]
- Spiecker, H. Silvicultural management in maintaining biodiversity and resistance of forests in Europe—Temperate zone. J. Environ. Manag. 2003, 67, 55–65. [Google Scholar] [CrossRef]
- Schaberg, P.G.; DeHayes, D.H.; Hawley, G.J.; Nijensohn, S.E. Anthropogenic alterations of genetic diversity within tree populations: Implications for forest ecosystem resilience. For. Ecol. Manag. 2008, 256, 855–862. [Google Scholar] [CrossRef]
- Jump, A.S.; Hunt, J.M.; Martínez-Izquierdo, J.A.; Peñuelas, J. Natural selection and climate change: Temperature-linked spatial and temporal trends in gene frequency in Fagus sylvatica. Mol. Ecol. 2006, 15, 3469–3480. [Google Scholar] [CrossRef]
- Koski, V.; Skrøppa, T.; Paule, L.; Wolf, H.; Turok, J. Technical Guidelines for Genetic Conservation of Norway Spruce (Picea abies (L.) Karst.); Bioversity International: Rome, Italy, 1997. [Google Scholar]
- Gutschick, V.P.; BassiriRad, H. Extreme events as shaping physiology, ecology, and evolution of plants: Toward a unified definition and evaluation of their consequences. New Phytol. 2003, 160, 21–42. [Google Scholar] [CrossRef]
- Alberto, F.J.; Aitken, S.N.; Alía, R.; González-Martínez, S.C.; Hänninen, H.; Kremer, A.; Lefèvre, F.; Lenormand, T.; Yeaman, S.; Whetten, R. Potential for evolutionary responses to climate change–evidence from tree populations. Glob. Change Biol. 2013, 19, 1645–1661. [Google Scholar] [CrossRef]
- Navarro, C.; Cavers, S.; Pappinen, A.; Tigerstedt, P.; Lowe, A.; Merilä, J. Contrasting quantitative traits and neutral genetic markers for genetic resource assessment of Mesoamerican Cedrela odorata. Silvae Genet. 2005, 54, 281–292. [Google Scholar] [CrossRef][Green Version]
- Alfaro, R.I.; King, J.N.; vanAkker, L. Delivering Sitka spruce with resistance against white pine weevil in British Columbia, Canada. For. Chron. 2013, 89, 235–245. [Google Scholar] [CrossRef]
- Kremer, A.; Ronce, O.; Robledo-Arnuncio, J.J.; Guillaume, F.; Bohrer, G.; Nathan, R.; Bridle, J.R.; Gomulkiewicz, R.; Klein, E.K.; Ritland, K. Long-distance gene flow and adaptation of forest trees to rapid climate change. Ecol. Lett. 2012, 15, 378–392. [Google Scholar] [CrossRef] [PubMed]
- Gomulkiewicz, R.; Houle, D. Demographic and genetic constraints on evolution. Am. Nat. 2009, 174, E218–E229. [Google Scholar] [CrossRef]
- Hoffmann, A.A.; Sgrò, C.M. Climate change and evolutionary adaptation. Nature 2011, 470, 479–485. [Google Scholar] [CrossRef]
- El-Kassaby, Y.; Fashler, A.; Crown, M. Variation in fruitfulness in a Douglas-fir seed orchard and its effect on crop-management decisions. Silvae Genet. 1989, 38, 3–4. [Google Scholar]
- Grivet, D.; Sebastiani, F.; Alía, R.; Bataillon, T.; Torre, S.; Zabal-Aguirre, M.; Vendramin, G.G.; González-Martínez, S.C. Molecular footprints of local adaptation in two Mediterranean conifers. Mol. Biol. Evol. 2011, 28, 101–116. [Google Scholar] [CrossRef]
- Thorsen, B.J.; Kjær, E.D. Forest genetic diversity and climate change: Economic considerations. In Climate Change and Forest Genetic Diversity: Implications for Sustainable Forest Management in Europe; Bioversity International: Rome, Italy, 2007; pp. 69–84. [Google Scholar]
- Barbour, R.C.; O’Reilly-Wapstra, J.M.; Little, D.W.D.; Jordan, G.J.; Steane, D.A.; Humphreys, J.R.; Bailey, J.K.; Whitham, T.G.; Potts, B.M. A geographic mosaic of genetic variation within a foundation tree species and its community-level consequences. Ecology 2009, 90, 1762–1772. [Google Scholar] [CrossRef]
- Bosselmann, A.S.; Jacobsen, J.B.; Kjær, E.D.; Thorsen, B. Climate Change, Uncertainty and the Economic Value of Genetic Diversity: A Pilot Study on Methodologies; Forest & Landscape: Hørsholm, Denmark, 2008. [Google Scholar]
- De Visser, J.A.G.; Elena, S.F.; Fragata, I.; Matuszewski, S. The utility of fitness landscapes and big data for predicting evolution. Heredity 2018, 121, 401–405. [Google Scholar] [CrossRef]
- Zahn, L.M.; Purnell, B.A. Genes under pressure. Science 2016, 354, 52. [Google Scholar] [CrossRef] [PubMed]
- Rellstab, C.; Gugerli, F.; Eckert, A.J.; Hancock, A.M.; Holderegger, R. A practical guide to environmental association analysis in landscape genomics. Mol. Ecol. 2015, 24, 4348–4370. [Google Scholar] [CrossRef] [PubMed]
- Forester, B.R.; Jones, M.R.; Joost, S.; Landguth, E.L.; Lasky, J.R. Detecting spatial genetic signatures of local adaptation in heterogeneous landscapes. Mol. Ecol. 2016, 25, 104–120. [Google Scholar] [CrossRef] [PubMed]
- Aitken, S.N.; Bemmels, J.B. Time to get moving: Assisted gene flow of forest trees. Evol. Appl. 2016, 9, 271–290. [Google Scholar] [CrossRef]
- Bayer, P.E.; Golicz, A.A.; Scheben, A.; Batley, J.; Edwards, D. Plant pan-genomes are the new reference. Nat. Plants 2020, 6, 914–920. [Google Scholar] [CrossRef]
- Barrera-Redondo, J.; Piñero, D.; Eguiarte, L.E. Genomic, transcriptomic and epigenomic tools to study the domestication of plants and animals: A field guide for beginners. Front. Genet. 2020, 11, 742. [Google Scholar] [CrossRef]
- Isabel, N.; Holliday, J.A.; Aitken, S.N. Forest genomics: Advancing climate adaptation, forest health, productivity, and conservation. Evol. Appl. 2020, 13, 3–10. [Google Scholar] [CrossRef]
- Lopez, S.; Rousset, F.; Shaw, F.H.; Shaw, R.G.; Ronce, O. Joint effects of inbreeding and local adaptation on the evolution of genetic load after fragmentation. Conserv. Biol. 2009, 23, 1618–1627. [Google Scholar] [CrossRef]
- Lenormand, T. Gene flow and the limits to natural selection. Trends Ecol. Evol. 2002, 17, 183–189. [Google Scholar] [CrossRef]
- Hampe, A.; Petit, R.J. Conserving biodiversity under climate change: The rear edge matters. Ecol. Lett. 2005, 8, 461–467. [Google Scholar] [CrossRef]
- Malcolm, J.R.; Markham, A.; Neilson, R.P.; Garaci, M. Estimated migration rates under scenarios of global climate change. J. Biogeogr. 2002, 29, 835–849. [Google Scholar] [CrossRef]
- Bhagwat, S.A.; Willis, K.J.; Birks, H.J.B.; Whittaker, R.J. Agroforestry: A refuge for tropical biodiversity? Trends Ecol. Evol. 2008, 23, 261–267. [Google Scholar] [CrossRef] [PubMed]
- Loarie, S.R.; Duffy, P.B.; Hamilton, H.; Asner, G.P.; Field, C.B.; Ackerly, D.D. The velocity of climate change. Nature 2009, 462, 1052–1055. [Google Scholar] [CrossRef] [PubMed]
- Restoux, G.; Silva, D.E.; Sagnard, F.; Torre, F.; Klein, E.; Fady, B. Life at the margin: The mating system of Mediterranean conifers. Web Ecol. 2008, 8, 94–102. [Google Scholar] [CrossRef]
- Dawson, I.K.; Vinceti, B.; Weber, J.C.; Neufeldt, H.; Russell, J.; Lengkeek, A.G.; Kalinganire, A.; Kindt, R.; Lillesø, J.-P.B.; Roshetko, J. Climate change and tree genetic resource management: Maintaining and enhancing the productivity and value of smallholder tropical agroforestry landscapes. A review. Agrofor. Syst. 2011, 81, 67–78. [Google Scholar] [CrossRef]
- Nicotra, A.B.; Atkin, O.K.; Bonser, S.P.; Davidson, A.M.; Finnegan, E.J.; Mathesius, U.; Poot, P.; Purugganan, M.D.; Richards, C.L.; Valladares, F. Plant phenotypic plasticity in a changing climate. Trends Plant Sci. 2010, 15, 684–692. [Google Scholar] [CrossRef]
- De Jong, G. Evolution of phenotypic plasticity: Patterns of plasticity and the emergence of ecotypes. New Phytol. 2005, 166, 101–118. [Google Scholar] [CrossRef]
- Skrøppa, T.; Tollefsrud, M.M.; Sperisen, C.; Johnsen, Ø. Rapid change in adaptive performance from one generation to the next in Picea abies—Central European trees in a Nordic environment. Tree Genet. Genomes 2010, 6, 93–99. [Google Scholar] [CrossRef]
- Vendramin, G.G.; Fady, B.; González-Martínez, S.C.; Hu, F.S.; Scotti, I.; Sebastiani, F.; Soto, A.; Petit, R.J. Genetically depauperate but widespread: The case of an emblematic Mediterranean pine. Evolution 2008, 62, 680–688. [Google Scholar] [CrossRef]
- Mutke, S.; Sánchez, J.G.; Santos, M.R.C.; Prada, M.A.; Álvarez, D.; Iglesias, S.; Sánchez, L.G. Phenotypic plasticity is stronger than adaptative differentiation among Mediterranean stone pine provenances. For. Syst. 2010, 19, 354–366. [Google Scholar] [CrossRef]
- Chevin, L.-M.; Lande, R.; Mace, G.M. Adaptation, plasticity, and extinction in a changing environment: Towards a predictive theory. PLoS Biol. 2010, 8, e1000357. [Google Scholar] [CrossRef]
- Sáez-Laguna, E.; Guevara, M.-Á.; Díaz, L.-M.; Sánchez-Gómez, D.; Collada, C.; Aranda, I.; Cervera, M.-T. Epigenetic variability in the genetically uniform forest tree species Pinus pinea L. PLoS ONE 2014, 9, e103145. [Google Scholar] [CrossRef] [PubMed]
- Gautam, M.K.; Mead, D.J.; Clinton, P.W.; Chang, S.X. Biomass and morphology of Pinus radiata coarse root components in a sub-humid temperate silvopastoral system. For. Ecol. Manag. 2003, 177, 387–397. [Google Scholar] [CrossRef]
- Hedhly, A.; Hormaza, J.I.; Herrero, M. Global warming and sexual plant reproduction. Trends Plant Sci. 2009, 14, 30–36. [Google Scholar] [CrossRef]
- Yakovlev, I.A.; Fossdal, C.G.; Johnsen, Ø. MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce. New Phytol. 2010, 187, 1154–1169. [Google Scholar] [CrossRef] [PubMed]
- Lira-Medeiros, C.F.; Parisod, C.; Fernandes, R.A.; Mata, C.S.; Cardoso, M.A.; Ferreira, P.C.G. Epigenetic variation in mangrove plants occurring in contrasting natural environment. PLoS ONE 2010, 5, e10326. [Google Scholar] [CrossRef]
- Bichueti, R.S.; Leal Filho, W.; Gomes, C.M.; Kneipp, J.M.; da Costa, C.R.R.; Frizzo, K. Climate Change and Urban Resilience in Smart Cities: Adaptation and Mitigation Strategies in Brazil and Germany. Urban Sci. 2025, 9, 179. [Google Scholar] [CrossRef]
- Dahal, D.; Bhattarai, N.; Silwal, A.; Shrestha, S.; Shrestha, B.; Poudel, B.; Kalra, A. A Review on Climate Change Impacts on Freshwater Systems and Ecosystem Resilience. Water 2025, 17, 3052. [Google Scholar] [CrossRef]
- Zhao, J.; Wang, H.; Shilong, Z.; Xiaowei, C.; Yang, Y. Reframing adaptive forest management to sustain ecosystem services under climate change. Forests 2025, 16, 1377. [Google Scholar] [CrossRef]
- Wang, W.; Peng, C.; Kneeshaw, D.D.; Larocque, G.R.; Song, X.; Zhou, X. Quantifying the effects of climate change and harvesting on carbon dynamics of boreal aspen and jack pine forests using the TRIPLEX-Management model. For. Ecol. Manag. 2012, 281, 152–162. [Google Scholar] [CrossRef]
- Lenton, T.M. Early warning of climate tipping points. Nat. Clim. Change 2011, 1, 201–209. [Google Scholar] [CrossRef]
- Whitham, T.G.; Bailey, J.K.; Schweitzer, J.A.; Shuster, S.M.; Bangert, R.K.; LeRoy, C.J.; Lonsdorf, E.V.; Allan, G.J.; DiFazio, S.P.; Potts, B.M. A framework for community and ecosystem genetics: From genes to ecosystems. Nat. Rev. Genet. 2006, 7, 510–523. [Google Scholar] [CrossRef] [PubMed]
- Mooney, H.; Larigauderie, A.; Cesario, M.; Elmquist, T.; Hoegh-Guldberg, O.; Lavorel, S.; Mace, G.M.; Palmer, M.; Scholes, R.; Yahara, T. Biodiversity, climate change, and ecosystem services. Curr. Opin. Environ. Sustain. 2009, 1, 46–54. [Google Scholar] [CrossRef]
- Liang, X.; Cong, X.; Du, B.; Ju, Y.; Wang, Y.; Li, D. Carbon–Water Coupling in Forest Ecosystems Under Climate Change: Advances in Water Use Efficiency and Sustainability Perspectives. Sustainability 2025, 17, 9501. [Google Scholar] [CrossRef]
- Yanchuk, A.; Allard, G. Tree improvement programmes for forest health–can they keep pace with climate changes. Unasylva 2009, 60, 50–56. [Google Scholar]
- Thomas, P.A. Trees: Their Natural History; Cambridge University Press: Cambridge, UK, 2014. [Google Scholar]
- Fox, C.W.; Reed, D.H. Inbreeding depression increases with maternal age in a seed-feeding beetle. Evol. Ecol. Res. 2010, 12, 961–972. [Google Scholar]
- Kettenring, K.M.; Mercer, K.L.; Reinhardt Adams, C.; Hines, J. EDITOR’S CHOICE: Application of genetic diversity–ecosystem function research to ecological restoration. J. Appl. Ecol. 2014, 51, 339–348. [Google Scholar] [CrossRef]
- FAO. The state of the world’s forest genetic resources. In Commission on Genetic Resources for Food and Agriculture; Food and Agriculture Organization: Rome, Italy, 2014. [Google Scholar]
- Gallo, E.; Lencinas, M.V.; Martínez Pastur, G.J. Site quality influences over understory plant diversity in old-growth and harvested Nothofagus pumilio forests. For. Syst. 2013, 22, 25–38. [Google Scholar] [CrossRef]
- Breed, M.F.; Stead, M.G.; Ottewell, K.M.; Gardner, M.G.; Lowe, A.J. Which provenance and where? Seed sourcing strategies for revegetation in a changing environment. Conserv. Genet. 2013, 14, 1–10. [Google Scholar] [CrossRef]
- Soldati, G.; Koelemeijer, P.; Boschi, L.; Deuss, A. Constraints on core-mantle boundary topography from normal mode splitting. Geochem. Geophys. Geosyst. 2013, 14, 1333–1342. [Google Scholar] [CrossRef]



| Feature | Traditional Breeding | Genomic Prediction (GP) | Assisted Gene Flow |
|---|---|---|---|
| Basic principle | Phenotypic selection of superior trees in natural populations | Prediction of reproductive value using genomic and historical phenotypic data | Targeted introduction of genetic material from external populations |
| Reproductive cycle time | Very large | Significantly reduced | Moderate |
| Type of features | Productivity and architectural characteristics | Polygenic traits | Adaptive or desirable traits |
| Genetic basis | Phenotype | Many markers throughout the genome | Transfer of alleles between populations |
| Risks | Reduction in genetic diversity, inbreeding | Requires large and high-quality data sets | Risk of maladaptation or genetic incompatibility |
| Advantages | Simple, proven method | High accuracy on complex traits, rapid progress | Increases genetic diversity and resilience |
| Scope | Natural stands and field tests | Modern forest breeding programs | Genetic resource management and climate adaptation |
| Feature | Genetic Adaptation | Phenotypic Plasticity | Migration |
|---|---|---|---|
| Time scale | Long-term | Short to medium term | Medium to long term |
| Mechanism base | Genetic diversity and natural selection | Epigenetic and morphological flexibility | Gene flow and population linkage |
| Role in climate change | Allows long-term survival through local adaptation | Provides immediate response to changing conditions | Allows monitoring of climate shifts |
| Advantages | Creates stable adapted populations | Works even with low genetic diversity | Increases genetic diversity and reduces genetic drift |
| Restrictions | Slow due to long generation intervals | May not promote long-term survival | Limited by fragmentation and human interventions |
| Risks | Insufficient rate of adaptation → extinction of populations | Conflict with genetic adaptation in the long term | Maladaptive gene flow, reduced fertility |
| Dependence on human intervention | Low | Low to moderate | Moderate |
| Genetic Tool | Description | Relevance to CSF |
|---|---|---|
| Phenotypic Selection | Selection of superior individuals based on observable traits (growth, architecture, productivity) | Provides initial stock for breeding; supports adaptation and productivity goals |
| Hybrid Breeding | Crosses between genetically distinct individuals to exploit heterosis (dominance, overdominance) | Enhances growth, resilience, and adaptability of forest stands |
| Marker-Assisted Selection (MAS) | Uses molecular markers linked to key traits to accelerate breeding | Speeds up selection of traits relevant for climate adaptation and productivity |
| Marker-Assisted Backcrossing (MAB) | Introgression of desired traits from external sources into elite populations | Facilitates targeted adaptation to environmental stress |
| Genomic Prediction (GP) | Predicts performance of individuals using genome-wide markers and historical phenotypes | Enables selection for polygenic traits (growth, stress tolerance) for adaptation and mitigation |
| Gene Editing (CRISPR/Cas, Transgenics) | Direct modification of genes controlling key traits | Potentially accelerates adaptation to climate stress; requires careful management due to ecological risks |
| Assisted Gene Flow (AGF) | Translocation of genotypes between populations to increase adaptive potential | Enhances resilience, maintains genetic diversity, and mitigates maladaptation |
| Epigenetic Monitoring | Analysis of heritable gene expression changes (e.g., DNA methylation) | Supports understanding of rapid phenotypic plasticity and short-term adaptation |
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Share and Cite
Malliarou, E.; Dalmaris, E.; Avramidou, E.V. Climate-Smart Forestry and Its Strong Correlation with Forest Genetic Resources: Current State and Future Actions. Forests 2026, 17, 268. https://doi.org/10.3390/f17020268
Malliarou E, Dalmaris E, Avramidou EV. Climate-Smart Forestry and Its Strong Correlation with Forest Genetic Resources: Current State and Future Actions. Forests. 2026; 17(2):268. https://doi.org/10.3390/f17020268
Chicago/Turabian StyleMalliarou, Ermioni, Eleftheria Dalmaris, and Evangelia V. Avramidou. 2026. "Climate-Smart Forestry and Its Strong Correlation with Forest Genetic Resources: Current State and Future Actions" Forests 17, no. 2: 268. https://doi.org/10.3390/f17020268
APA StyleMalliarou, E., Dalmaris, E., & Avramidou, E. V. (2026). Climate-Smart Forestry and Its Strong Correlation with Forest Genetic Resources: Current State and Future Actions. Forests, 17(2), 268. https://doi.org/10.3390/f17020268

