Abstract
One of the major factors contributing to HIV-1 drug resistance is suboptimal adherence to combination antiretroviral therapy (cART). Currently, recommended cART for HIV-1 treatment is a three-drug combination, whereas the pre-exposure prophylaxis (PrEP) regimens consist of one or two antivirals. Treatment regimens require adherence to a once or twice (in a subset of patients) daily dose. Long-acting formulations such as injections administered monthly could improve adherence and convenience, and thereby have potential to enhance the chances of expected outcomes, although long-lasting drug concentrations can also contribute to clinical issues like adverse events and development of drug resistance. Globally, two long-acting antivirals have been approved, and fifteen are in clinical trials. More than half of investigational long-acting antivirals target HIV-1 reverse transcriptase (HIV-1 RT) and/or integrase (HIV-1 IN). Here, we discuss the status and potential of long-acting inhibitors, including rilpivirine (RPV), dapivirine (DPV), and 4-ethynyl-2-fluoro-2-deoxyadenosine (EFdA; also known as MK-8591), which target RT, and cabotegravir (CAB), which targets IN. The outcomes of various clinical trials appear quite satisfactory, and the future of long-acting HIV-1 regimens appears bright.
1. Introduction
Revolutionary advances in combination antiretroviral therapy (cART) have rendered HIV from a fatal to chronic disease. If managed efficiently cART significantly improves the life expectancy of a patient [1]. The cART restores (or maintains) CD4 cell counts and suppresses viral load. Currently recommended first-line treatments for HIV infection include a three-drug coformulation in a once-daily fixed-dose single-pill regimen. This formulation virologically suppresses HIV in more than 80% of patients [2,3,4]. Some components have also been recommended for pre-exposure prophylaxis (PrEP) [5]. The approved PrEP regimens are tenofovir disoproxil fumarate (TDF) monotherapy or the combination of TDF and emtricitabine (2’,3’-dideoxy-5-fluoro-3’-thiacytidine or FTC) [5]. The results of clinical trials have shown a reduction in the risk of HIV acquisition by more than 85% in uninfected individuals on PrEP medication [6,7]. In spite of such success, desired therapeutic outcomes of cART are hampered by compromised adherence in both resource-rich and low- and middle-income countries. Long-acting (LA) treatment strategies, especially parenteral, have been successful in facilitating the adherence and minimizing the lapse in medication in other fields of medicine [8,9,10]. Hence, parallel strategies to improve adherence to anti-HIV regimens have been sought.
To date, one LA antiviral (ibalizumab, a humanized IgG4 antibody) has been approved by the United States Food and Drug Administration. Ibalizumab inhibits HIV infection at post attachment steps by binding to domain 2 of the CD4 receptor and blocking binding of HIV to the cell. Ibalizumab, together with optimized background therapy, is recommended for treatment-experienced patients with multidrug-resistant viruses who are failing current therapy [2]. Another LA drug, which is an entry inhibitor interfering with the binding to gp41 and thereby the fusion step (albuvirtide, a 32-amino acid long analog of gp41) is approved exclusively in China. An additional fifteen antivirals are currently being evaluated in preclinical or advanced clinical trials. Of these, six target HIV-1 reverse transcriptase (HIV-1 RT), two inhibit HIV-1 integrase (HIV-1 IN), three are entry inhibitors, two block capsid (CA) assembly/disassembly processes, and the remaining two inhibit HIV protease (PR). Here, we discuss only RT and IN inhibitors including: EFdA (4-ethynyl-2-fluoro-2-deoxyadenosine) also known as MK-8591, a nucleoside RT inhibitor that inhibits HIV by multiple mechanisms; rilpivirine (RPV), a second-generation non-nucleoside RT inhibitor (NNRTI); and cabotegravir (CAB), a second-generation integrase strand transfer inhibitor (INSTI).
4. Challenges of Subtype-Specific Polymorphisms and Pre-Existing Resistance Mutations
Subtype-specific polymorphisms and pre-existing resistance mutations can influence the efficacy of antiretrovirals [14,71,79,80,81]. For example, polymorphism E138A in HIV-1 RT is more common in subtype C (HIV-1C) (6–8%) than HIV-1B (0–2.3%) [82]. Mutation E138A reduces the susceptibility of RPV to varying degrees [82,83,84], leaving the possibility that RPV LA formulation in HIV-1C patients may not yield the desired outcome.
A detailed phylogenetic analyses showed two distinct genetic clusters in pol, which were also maintained in gag, int/vif, and env [85]. These two clusters were linked to either C181 or Y181 in RT, suggesting that C181 group O strains are naturally resistant to NNRTIs.
The resistance profile of CAB is still emerging. However, some reports have documented CAB resistance mutations. In a study conducted with SIVmac251-infected rhesus macaques, mutations I31L, Q91R, E92Q/G/M, T97A/I, G106S, G118R, H156G/R, and V172L and a duplication of five residues at position 232 have been implicated in CAB resistance [86,87]. Except E92Q/G/M and G118R, all mutations are unique to CAB resistance [88]. A recent in vitro resistance selection study showed the emergence of H51N, L74M/I, Q146L, Q148R/K S153Y, S147G, and R263K mutation under CAB pressure [74]. Polymorphisms I31L and L74I/M are present to a varying extent in different HIV-1 subtypes [89]. For example, polymorphism L74I has been reported in more than 93% in HIV-1A1 strains from Russia and countries of the former Soviet Union [90,91,92]. Hence, subtype-specific polymorphisms in HIV-1 IN can affect the outcome of the CAB LA formulation.
The emergence of NRTI resistance mutations in different subtypes can potentially reduce the long-acting formulation of certain NRTIs. For example, the K65R mutation is associated with both TAF and TDF resistance. Reports have shown that the K65R mutation is selected faster in HIV-1C than in HIV-1B and HIV-1A [79,82]. Globally, HIV-1C is the most prevalent subtype. A high prevalence of K65R has been reported in HIV-1C [93,94,95]. Despite a low prevalence of K65R transmitted resistance mutation [96], a recent comprehensive study suggested a substantial potential for onward transmission to uninfected individuals [97]. Hence, these reports emphasize drug resistance surveillance in untreated individuals for an effective TAF LA formulation. In this context, the EFdA LA formulations may provide better results, as K65R viruses are hypersusceptible to EFdA [19].
5. Clinical Challenges with LA Anti-HIV Compounds
Although the preclinical and clinical data presented so far are promising, some clinical issues remain to be addressed. These issues include side effects, drug–drug interactions, and pregnancy, and the pharmacokinetics with long-lasting drug concentrations is not only a prerequisite for the promising clinical benefits, but can also lead to the development of drug resistance. The dosing interval must be selected based on the trough of the compound at the end of the injection interval to ensure that it remains above the concentration required to inhibit HIV-1 efficiently in order to avoid selective pressure for the development of drug resistance. Furthermore, even if the injection interval can be defined so that suboptimal drug concentrations are avoided, there is a potential for emergence of viral resistance as drug concentrations decline during protracted periods of sub-therapeutic exposure after ART discontinuation. Thus, even if LA agents could increase adherence in many patients, an advanced risk for resistance development still persists if patients are non-adherent to the schedule of optimized dosing intervals.
6. Conclusions
In conclusion, here, we presented the status of potential LA antivirals that target HIV-1 RT and HIV-1 IN. So far, the results from clinical trials appear encouraging, but more data are required before LA antivirals can be commonplace. Nonetheless, the future of the LA formulations appears bright. Once the LA combinations are approved, improved adherence to and convenience of cART are expected to be achieved.
Author Contributions
K.S. wrote the manuscript. K.S., S.G.S., and A.S. did the literature survey and edited the manuscript.
Funding
This research was funded by the National Institute of Health R01 Grants GM118012 and AI076119. The study was also supported by the Swedish Research Council (2016-01675, A.S.) and the Stockholm County Council (ALF 20160074, A.S.). In addition, K.S. acknowledges support from the Bond Life Sciences Center grant (DU108).
Conflicts of Interest
The authors declare no conflicts of interest.
References
- Teeraananchai, S.; Kerr, S.J.; Amin, J.; Ruxrungtham, K.; Law, M.G. Life expectancy of HIV-positive people after starting combination antiretroviral therapy: A meta-analysis. HIV Med. 2017, 18, 256–266. [Google Scholar] [CrossRef] [PubMed]
- Gulick, R.M.; Flexner, C. Long-acting HIV drugs for treatment and prevention. Annu. Rev. Med. 2019, 70, 137–150. [Google Scholar] [CrossRef]
- Gunthard, H.F.; Saag, M.S.; Benson, C.A.; del Rio, C.; Eron, J.J.; Gallant, J.E.; Hoy, J.F.; Mugavero, M.J.; Sax, P.E.; Thompson, M.A.; et al. Antiretroviral drugs for treatment and prevention of HIV infection in adults: 2016 recommendations of the international antiviral society-USA panel. JAMA 2016, 316, 191–210. [Google Scholar] [CrossRef] [PubMed]
- Saag, M.S.; Benson, C.A.; Gandhi, R.T.; Hoy, J.F.; Landovitz, R.J.; Mugavero, M.J.; Sax, P.E.; Smith, D.M.; Thompson, M.A.; Buchbinder, S.P.; et al. Antiretroviral drugs for treatment and prevention of HIV infection in adults: 2018 recommendations of the international antiviral society-USA panel. JAMA 2018, 320, 379–396. [Google Scholar] [CrossRef] [PubMed]
- Preexposure Prophylaxis for the Prevention of HIV Infection in the United States—2017 Update: A Clinical Practice Guideline. Available online: https://www.cdc.gov/hiv/pdf/risk/prep/cdc-hiv-prep-guidelines-2017.pdf (accessed on 12 March 2019).
- Molina, J.M.; Capitant, C.; Spire, B.; Pialoux, G.; Cotte, L.; Charreau, I.; Tremblay, C.; Le Gall, J.M.; Cua, E.; Pasquet, A.; et al. On-demand preexposure prophylaxis in men at high risk for HIV-1 infection. N. Engl. J. Med. 2015, 373, 2237–2246. [Google Scholar] [CrossRef]
- McCormack, S.; Dunn, D.T.; Desai, M.; Dolling, D.I.; Gafos, M.; Gilson, R.; Sullivan, A.K.; Clarke, A.; Reeves, I.; Schembri, G.; et al. Pre-exposure prophylaxis to prevent the acquisition of HIV-1 infection (proud): Effectiveness results from the pilot phase of a pragmatic open-label randomised trial. Lancet 2016, 387, 53–60. [Google Scholar] [CrossRef]
- Winner, B.; Peipert, J.F.; Zhao, Q.; Buckel, C.; Madden, T.; Allsworth, J.E.; Secura, G.M. Effectiveness of long-acting reversible contraception. N. Engl. J. Med. 2012, 366, 1998–2007. [Google Scholar] [CrossRef]
- Rattan, J.; Noznesky, E.; Curry, D.W.; Galavotti, C.; Hwang, S.; Rodriguez, M. Rapid contraceptive uptake and changing method mix with high use of long-acting reversible contraceptives in crisis-affected populations in chad and the democratic republic of the congo. Glob. Health Sci. Pract. 2016, 4 (Suppl. 2), S5–S20. [Google Scholar] [CrossRef]
- Fok, W.K.; Blumenthal, P.D. HIV and contraception. Curr. Opin. Obstet. Gynecol. 2017, 29, 419–426. [Google Scholar] [CrossRef] [PubMed]
- Sarafianos, S.G.; Marchand, B.; Das, K.; Himmel, D.M.; Parniak, M.A.; Hughes, S.H.; Arnold, E. Structure and function of HIV-1 reverse transcriptase: Molecular mechanisms of polymerization and inhibition. J. Mol. Biol. 2009, 385, 693–713. [Google Scholar] [CrossRef] [PubMed]
- Singh, K.; Marchand, B.; Kirby, K.A.; Michailidis, E.; Sarafianos, S.G. Structural aspects of drug resistance and inhibition of HIV-1 reverse transcriptase. Viruses 2010, 2, 606–638. [Google Scholar] [CrossRef] [PubMed]
- Menendez-Arias, L. Molecular basis of human immunodeficiency virus drug resistance: An update. Antivir. Res. 2010, 85, 210–231. [Google Scholar] [CrossRef] [PubMed]
- Singh, K.; Flores, J.A.; Kirby, K.A.; Neogi, U.; Sonnerborg, A.; Hachiya, A.; Das, K.; Arnold, E.; McArthur, C.; Parniak, M.; et al. Drug resistance in non-b subtype HIV-1: Impact of HIV-1 reverse transcriptase inhibitors. Viruses 2014, 6, 3535–3562. [Google Scholar] [CrossRef] [PubMed]
- Das, K.; Martinez, S.E.; Bauman, J.D.; Arnold, E. HIV-1 reverse transcriptase complex with DNA and nevirapine reveals non-nucleoside inhibition mechanism. Nat. Struct. Mol. Biol. 2012, 19, 253–259. [Google Scholar] [CrossRef]
- Kawamoto, A.; Kodama, E.; Sarafianos, S.G.; Sakagami, Y.; Kohgo, S.; Kitano, K.; Ashida, N.; Iwai, Y.; Hayakawa, H.; Nakata, H.; et al. 2′-deoxy-4′-c-ethynyl-2-halo-adenosines active against drug-resistant human immunodeficiency virus type 1 variants. Int. J. Biochem. Cell Biol. 2008, 40, 2410–2420. [Google Scholar] [CrossRef] [PubMed]
- Michailidis, E.; Marchand, B.; Kodama, E.N.; Singh, K.; Matsuoka, M.; Kirby, K.A.; Ryan, E.M.; Sawani, A.M.; Nagy, E.; Ashida, N.; et al. Mechanism of inhibition of HIV-1 reverse transcriptase by 4′-ethynyl-2-fluoro-2′-deoxyadenosine triphosphate, a translocation-defective reverse transcriptase inhibitor. J. Biol. Chem. 2009, 284, 35681–35691. [Google Scholar] [CrossRef]
- Michailidis, E.; Huber, A.D.; Ryan, E.M.; Ong, Y.T.; Leslie, M.D.; Matzek, K.B.; Singh, K.; Marchand, B.; Hagedorn, A.N.; Kirby, K.A.; et al. 4′-ethynyl-2-fluoro-2′-deoxyadenosine (efda) inhibits HIV-1 reverse transcriptase with multiple mechanisms. J. Biol. Chem. 2014, 289, 24533–24548. [Google Scholar] [CrossRef] [PubMed]
- Michailidis, E.; Ryan, E.M.; Hachiya, A.; Kirby, K.A.; Marchand, B.; Leslie, M.D.; Huber, A.D.; Ong, Y.T.; Jackson, J.C.; Singh, K.; et al. Hypersusceptibility mechanism of tenofovir-resistant HIV to efda. Retrovirology 2013, 10, 65. [Google Scholar] [CrossRef] [PubMed]
- Salie, Z.L.; Kirby, K.A.; Michailidis, E.; Marchand, B.; Singh, K.; Rohan, L.C.; Kodama, E.N.; Mitsuya, H.; Parniak, M.A.; Sarafianos, S.G. Structural basis of HIV inhibition by translocation-defective rt inhibitor 4′-ethynyl-2-fluoro-2′-deoxyadenosine (efda). Proc. Natl. Acad. Sci. USA 2016, 113, 9274–9279. [Google Scholar] [CrossRef]
- Hachiya, A.; Reeve, A.B.; Marchand, B.; Michailidis, E.; Ong, Y.T.; Kirby, K.A.; Leslie, M.D.; Oka, S.; Kodama, E.N.; Rohan, L.C.; et al. Evaluation of combinations of 4′-ethynyl-2-fluoro-2′-deoxyadenosine with clinically used antiretroviral drugs. Antimicrob. Agents Chemother. 2013, 57, 4554–4558. [Google Scholar] [CrossRef]
- Markowitz, M.; Sarafianos, S.G. 4′-ethynyl-2-fluoro-2′-deoxyadenosine, mk-8591: A novel HIV-1 reverse transcriptase translocation inhibitor. Curr. Opin. HIV AIDS 2018, 13, 294–299. [Google Scholar] [CrossRef]
- Takamatsu, Y.; Das, D.; Kohgo, S.; Hayashi, H.; Delino, N.S.; Sarafianos, S.G.; Mitsuya, H.; Maeda, K. The high genetic barrier of efda/mk-8591 stems from strong interactions with the active site of drug-resistant HIV-1 reverse transcriptase. Cell Chem. Biol. 2018, 25, 1268–1278. [Google Scholar] [CrossRef] [PubMed]
- Maeda, K.; Desai, D.V.; Aoki, M.; Nakata, H.; Kodama, E.N.; Mitsuya, H. Delayed emergence of HIV-1 variants resistant to 4′-ethynyl-2-fluoro-2′-deoxyadenosine: Comparative sequential passage study with lamivudine, tenofovir, emtricitabine and bms-986001. Antivir. Ther. 2014, 19, 179–189. [Google Scholar] [CrossRef] [PubMed]
- Njenda, D.T.; Aralaguppe, S.G.; Singh, K.; Rao, R.; Sonnerborg, A.; Sarafianos, S.G.; Neogi, U. Antiretroviral potency of 4′-ethnyl-2′-fluoro-2′-deoxyadenosine, tenofovir alafenamide and second-generation nnrtis across diverse HIV-1 subtypes. J. Antimicrob. Chemother. 2018, 73, 2721–2728. [Google Scholar] [CrossRef] [PubMed]
- Grobler, J.; McHale, C.; Freddo, C.; Dreyer, D.; Sun, L.; Vavrek, M.; Breidinger, S.; Fillgrove, K.; Hazuda, D.; Lai, M.-T. Mk-8591 concentrations at sites of HIV transmission and replication. In Proceedings of the Conference on Retroviruses and Opportunistic Infections, Seattle, WA, USA, 13–16 February 2017. [Google Scholar]
- Barrett, S.E.; Teller, R.S.; Forster, S.P.; Li, L.; Mackey, M.A.; Skomski, D.; Yang, Z.; Fillgrove, K.L.; Doto, G.J.; Wood, S.L.; et al. Extended-duration mk-8591-eluting implant as a candidate for HIV treatment and prevention. Antimicrob. Agents Chemother. 2018, 62, e1058-18. [Google Scholar] [CrossRef] [PubMed]
- Flexner, C. Antiretroviral implants for treatment and prevention of HIV infection. Curr. Opin. HIV AIDS 2018, 13, 374–380. [Google Scholar] [CrossRef] [PubMed]
- Zhang, W.; Hu, M.; Shi, Y.; Gong, T.; Dezzutti, C.S.; Moncla, B.; Sarafianos, S.G.; Parniak, M.A.; Rohan, L.C. Vaginal microbicide film combinations of two reverse transcriptase inhibitors, efda and csic, for the prevention of HIV-1 sexual transmission. Pharm. Res. 2015, 32, 2960–2972. [Google Scholar] [CrossRef] [PubMed]
- Zhang, W.; Parniak, M.A.; Mitsuya, H.; Sarafianos, S.G.; Graebing, P.W.; Rohan, L.C. Preformulation studies of efda, a novel nucleoside reverse transcriptase inhibitor for HIV prevention. Drug Dev. Ind. Pharm. 2014, 40, 1101–1111. [Google Scholar] [CrossRef] [PubMed][Green Version]
- Zhang, W.; Parniak, M.A.; Sarafianos, S.G.; Cost, M.R.; Rohan, L.C. Development of a vaginal delivery film containing efda, a novel anti-HIV nucleoside reverse transcriptase inhibitor. Int. J. Pharm. 2014, 461, 203–213. [Google Scholar] [CrossRef]
- Murphey-Corb, M.; Rajakumar, P.; Michael, H.; Nyaundi, J.; Didier, P.J.; Reeve, A.B.; Mitsuya, H.; Sarafianos, S.G.; Parniak, M.A. Response of simian immunodeficiency virus to the novel nucleoside reverse transcriptase inhibitor 4′-ethynyl-2-fluoro-2′-deoxyadenosine in vitro and in vivo. Antimicrob. Agents Chemother. 2012, 56, 4707–4712. [Google Scholar] [CrossRef]
- Stoddart, C.A.; Galkina, S.A.; Joshi, P.; Kosikova, G.; Moreno, M.E.; Rivera, J.M.; Sloan, B.; Reeve, A.B.; Sarafianos, S.G.; Murphey-Corb, M.; et al. Oral administration of the nucleoside efda (4′-ethynyl-2-fluoro-2′-deoxyadenosine) provides rapid suppression of HIV viremia in humanized mice and favorable pharmacokinetic properties in mice and the rhesus macaque. Antimicrob. Agents Chemother. 2015, 59, 4190–4198. [Google Scholar] [CrossRef] [PubMed]
- Friedman, E.; Schuermann, D.; Rudd, D.J.; Fox-Bosetti, S.; Zhang, S.; Robberechts, M.; Hueser, H.; Hazuda, D.J.; Iwamoto, M.; Grobler, J. A single monotherapy dose of mk-8591, a novel nrti, suppresses HIV for 10 days. In Proceedings of the Conference on Retroviruses and Opportunistic Infections, Boston, MA, USA, 22–25 February 2016. [Google Scholar]
- Grobler, J.; Friedman, E.; Barrett, S.E.; Wood, S.L.; Ankrom, W.; Fillgrove, K.L.; Lai, M.-T.; Gindy, M.; Iwamoto, M.; Hazuda, D.J. Long-acting oral and parenteral dosing of mk-8591 for HIV treatment or prophylaxis. In Proceedings of the Conference on Retroviruses and Opportunistic Infections, Boston, MA, USA, 22–25 February 2016. [Google Scholar]
- Ruane, P.J.; DeJesus, E.; Berger, D.; Markowitz, M.; Bredeek, U.F.; Callebaut, C.; Zhong, L.; Ramanathan, S.; Rhee, M.S.; Fordyce, M.W.; et al. Antiviral activity, safety, and pharmacokinetics/pharmacodynamics of tenofovir alafenamide as 10-day monotherapy in HIV-1-positive adults. J. Acquir. Immune Defic. Syndr. 2013, 63, 449–455. [Google Scholar] [CrossRef]
- Margot, N.A.; Johnson, A.; Miller, M.D.; Callebaut, C. Characterization of HIV-1 resistance to tenofovir alafenamide in vitro. Antimicrob. Agents Chemother. 2015, 59, 5917–5924. [Google Scholar] [CrossRef]
- Sax, P.E.; Wohl, D.; Yin, M.T.; Post, F.; DeJesus, E.; Saag, M.; Pozniak, A.; Thompson, M.; Podzamczer, D.; Molina, J.M.; et al. Tenofovir alafenamide versus tenofovir disoproxil fumarate, coformulated with elvitegravir, cobicistat, and emtricitabine, for initial treatment of HIV-1 infection: Two randomised, double-blind, phase 3, non-inferiority trials. Lancet 2015, 385, 2606–2615. [Google Scholar] [CrossRef]
- Gunawardana, M.; Remedios-Chan, M.; Miller, C.S.; Fanter, R.; Yang, F.; Marzinke, M.A.; Hendrix, C.W.; Beliveau, M.; Moss, J.A.; Smith, T.J.; et al. Pharmacokinetics of long-acting tenofovir alafenamide (gs-7340) subdermal implant for HIV prophylaxis. Antimicrob. Agents Chemother. 2015, 59, 3913–3919. [Google Scholar] [CrossRef] [PubMed]
- Schlesinger, E.; Johengen, D.; Luecke, E.; Rothrock, G.; McGowan, I.; van der Straten, A.; Desai, T. A tunable, biodegradable, thin-film polymer device as a long-acting implant delivering tenofovir alafenamide fumarate for HIV pre-exposure prophylaxis. Pharm. Res. 2016, 33, 1649–1656. [Google Scholar] [CrossRef] [PubMed]
- O’Neill, A.M. Perceptual rotations on children’s rorschachs. J. Clin. Psychol. 1989, 45, 809–813. [Google Scholar] [CrossRef]
- Smith, J.M.; Moss, J.A.; Srinivasan, P.; Butkyavichene, I.; Gunawardana, M.; Fanter, R.; Miller, C.S.; Sanchez, D.; Yang, F.; Ellis, S.; et al. Novel multipurpose pod-intravaginal ring for the prevention of HIV, hsv, and unintended pregnancy: Pharmacokinetic evaluation in a macaque model. PLoS ONE 2017, 12, e0185946. [Google Scholar] [CrossRef] [PubMed]
- Cihlar, T.; Ray, A.S.; Boojamra, C.G.; Zhang, L.; Hui, H.; Laflamme, G.; Vela, J.E.; Grant, D.; Chen, J.; Myrick, F.; et al. Design and profiling of gs-9148, a novel nucleotide analog active against nucleoside-resistant variants of human immunodeficiency virus type 1, and its orally bioavailable phosphonoamidate prodrug, gs-9131. Antimicrob. Agents Chemother. 2008, 52, 655–665. [Google Scholar] [CrossRef]
- Ray, A.S.; Vela, J.E.; Boojamra, C.G.; Zhang, L.; Hui, H.; Callebaut, C.; Stray, K.; Lin, K.Y.; Gao, Y.; Mackman, R.L.; et al. Intracellular metabolism of the nucleotide prodrug gs-9131, a potent anti-human immunodeficiency virus agent. Antimicrob. Agents Chemother. 2008, 52, 648–654. [Google Scholar] [CrossRef] [PubMed]
- White, K.L.; Margot, N.; Stray, K.; Yu, H.; Stepan, G.; Boojamra, C.; Mackman, R.; Ray, A.; Miller, M.D.; Cilhar, T. Gs-9131 is a novel nrti with activity against nrti-resistant HIV-1. In Proceedings of the Conference on Retroviruses and Opportunistic Infections, Seattle, WA, USA, 13–16 February 2017. [Google Scholar]
- Mackman, R.L.; Ray, A.S.; Hui, H.C.; Zhang, L.; Birkus, G.; Boojamra, C.G.; Desai, M.C.; Douglas, J.L.; Gao, Y.; Grant, D.; et al. Discovery of gs-9131: Design, synthesis and optimization of amidate prodrugs of the novel nucleoside phosphonate HIV reverse transcriptase (rt) inhibitor gs-9148. Bioorg. Med. Chem. 2010, 18, 3606–3617. [Google Scholar] [CrossRef]
- Das, K.; Clark, A.D., Jr.; Lewi, P.J.; Heeres, J.; De Jonge, M.R.; Koymans, L.M.; Vinkers, H.M.; Daeyaert, F.; Ludovici, D.W.; Kukla, M.J.; et al. Roles of conformational and positional adaptability in structure-based design of tmc125-r165335 (etravirine) and related non-nucleoside reverse transcriptase inhibitors that are highly potent and effective against wild-type and drug-resistant HIV-1 variants. J. Med. Chem. 2004, 47, 2550–2560. [Google Scholar]
- Nel, A.; Haazen, W.; Nuttall, J.; Romano, J.; Rosenberg, Z.; van Niekerk, N. A safety and pharmacokinetic trial assessing delivery of dapivirine from a vaginal ring in healthy women. AIDS 2014, 28, 1479–1487. [Google Scholar] [CrossRef]
- Chen, B.A.; Panther, L.; Marzinke, M.A.; Hendrix, C.W.; Hoesley, C.J.; van der Straten, A.; Husnik, M.J.; Soto-Torres, L.; Nel, A.; Johnson, S.; et al. Phase 1 safety, pharmacokinetics, and pharmacodynamics of dapivirine and maraviroc vaginal rings: A double-blind randomized trial. J. Acquir. Immune Defic. Syndr. 2015, 70, 242–249. [Google Scholar] [CrossRef] [PubMed]
- Baeten, J.M.; Palanee-Phillips, T.; Brown, E.R.; Schwartz, K.; Soto-Torres, L.E.; Govender, V.; Mgodi, N.M.; Matovu Kiweewa, F.; Nair, G.; Mhlanga, F.; et al. Use of a vaginal ring containing dapivirine for HIV-1 prevention in women. N. Engl. J. Med. 2016, 375, 2121–2132. [Google Scholar] [CrossRef]
- Riddler, S.A.; Balkus, J.E.; Parikh, U.M.; Mellors, J.W.; Akello, C.; Dadabhai, S.; Mhlanga, F.; Ramjee, G.; Mayo, A.J.; Livant, E.; et al. Clinical and virologic outcomes following initiation of antiretroviral therapy among seroconverters in the mtn-020/aspire phase iii trial of the dapivirine vaginal ring. Clin. Infect. Dis. 2018. [Google Scholar] [CrossRef] [PubMed]
- Mensch, B.S.; Richardson, B.A.; Husnik, M.; Brown, E.R.; Kiweewa, F.M.; Mayo, A.J.; Baeten, J.M.; Palanee-Phillips, T.; van der Straten, A.; MTN-020/ASPIRE Study Team. Vaginal ring use in a phase 3 microbicide trial: A comparison of objective measures and self-reports of non-adherence in aspire. AIDS Behav. 2019, 23, 504–512. [Google Scholar] [CrossRef]
- Chitukuta, M.; Duby, Z.; Katz, A.; Nakyanzi, T.; Reddy, K.; Palanee-Phillips, T.; Tembo, T.; Etima, J.; Musara, P.; Mgodi, N.M.; et al. Negative rumours about a vaginal ring for HIV-1 prevention in sub-saharan africa. Cult. Health Sex. 2019, 1–16. [Google Scholar] [CrossRef] [PubMed]
- Palanee-Phillips, T.; Roberts, S.T.; Reddy, K.; Govender, V.; Naidoo, L.; Siva, S.; Gafoor, Z.; Pather, A.; Matovu, F.; Hlahla, K.; et al. Impact of partner-related social harms on women’s adherence to the dapivirine vaginal ring during a phase iii trial. J. Acquir. Immune Defic. Syndr. 2018, 79, 580–589. [Google Scholar] [CrossRef] [PubMed]
- Noguchi, L.M.; Hoesley, C.; Kelly, C.; Scheckter, R.; Bunge, K.; Nel, A.; Marzinke, M.A.; Hendrix, C.W.; Dezzutti, C.S.; Hillier, S.L.; et al. Pharmacokinetics of dapivirine transfer into blood plasma, breast milk, and cervicovaginal fluid of lactating women using the dapivirine vaginal ring. Antimicrob. Agents Chemother. 2019, 63, e01930-18. [Google Scholar] [CrossRef] [PubMed]
- Makanani, B.; Balkus, J.E.; Jiao, Y.; Noguchi, L.M.; Palanee-Phillips, T.; Mbilizi, Y.; Moodley, J.; Kintu, K.; Reddy, K.; Kabwigu, S.; et al. Pregnancy and infant outcomes among women using the dapivirine vaginal ring in early pregnancy. J. Acquir. Immune Defic. Syndr. 2018, 79, 566–572. [Google Scholar] [CrossRef]
- Murphy, D.J.; Desjardins, D.; Boyd, P.; Dereuddre-Bosquet, N.; Stimmer, L.; Caldwell, A.; Le Grand, R.; Kelly, C.; van Roey, J.; Malcolm, R.K. Impact of ring size and drug loading on the pharmacokinetics of a combination dapivirine-darunavir vaginal ring in cynomolgus macaques. Int. J. Pharm. 2018, 550, 300–308. [Google Scholar] [CrossRef]
- Cohen, C.; Wohl, D.; Arribas, J.; Henry, K.; Van Lunzen, J.; Bloch, M.; Towner, W.; Wilkins, E.; Wang, H.; White, K.; et al. Star study: Single tablet regimen emtricitabine/rilpivirine/tenofovir df is non-inferior to efavirenz/emtricitabine/tenofovir df in art-naïve adults. J. Int. AIDS Soc. 2012, 15 (Suppl. 4), 18221. [Google Scholar] [CrossRef]
- Cohen, C.J.; Andrade-Villanueva, J.; Clotet, B.; Fourie, J.; Johnson, M.A.; Ruxrungtham, K.; Wu, H.; Zorrilla, C.; Crauwels, H.; Rimsky, L.T.; et al. Rilpivirine versus efavirenz with two background nucleoside or nucleotide reverse transcriptase inhibitors in treatment-naive adults infected with HIV-1 (thrive): A phase 3, randomised, non-inferiority trial. Lancet 2011, 378, 229–237. [Google Scholar] [CrossRef]
- Jackson, A.G.; Else, L.J.; Mesquita, P.M.; Egan, D.; Back, D.J.; Karolia, Z.; Ringner-Nackter, L.; Higgs, C.J.; Herold, B.C.; Gazzard, B.G.; et al. A compartmental pharmacokinetic evaluation of long-acting rilpivirine in HIV-negative volunteers for pre-exposure prophylaxis. Clin. Pharmacol. Ther. 2014, 96, 314–323. [Google Scholar] [CrossRef]
- McGowan, I.; Dezzutti, C.S.; Siegel, A.; Engstrom, J.; Nikiforov, A.; Duffill, K.; Shetler, C.; Richardson-Harman, N.; Abebe, K.; Back, D.; et al. Long-acting rilpivirine as potential pre-exposure prophylaxis for HIV-1 prevention (the mwri-01 study): An open-label, phase 1, compartmental, pharmacokinetic and pharmacodynamic assessment. Lancet HIV 2016, 3, e569–e578. [Google Scholar] [CrossRef]
- Spreen, W.; Williams, P.; Margolis, D.; Ford, S.L.; Crauwels, H.; Lou, Y.; Gould, E.; Stevens, M.; Piscitelli, S. Pharmacokinetics, safety, and tolerability with repeat doses of gsk1265744 and rilpivirine (tmc278) long-acting nanosuspensions in healthy adults. J. Acquir. Immune Defic. Syndr. 2014, 67, 487–492. [Google Scholar] [CrossRef] [PubMed]
- Verloes, R.; Deleu, S.; Niemeijer, N.; Crauwels, H.; Meyvisch, P.; Williams, P. Safety, tolerability and pharmacokinetics of rilpivirine following administration of a long-acting formulation in healthy volunteers. HIV Med. 2015, 16, 477–484. [Google Scholar] [CrossRef] [PubMed]
- Williams, P.E.; Crauwels, H.M.; Basstanie, E.D. Formulation and pharmacology of long-acting rilpivirine. Curr. Opin. HIV AIDS 2015, 10, 233–238. [Google Scholar] [CrossRef] [PubMed]
- Bekker, L.-G.; Li, S.S.; Tolly, B.; Marzinke, M.A.; Mgodi, N.; Justman, J.E.; Swaminathan, S.; Adeyeye, A.; Farrior, J.H.; Sista, N. Hptn076:Tmc278 ls safe, tolarable, and acceptable for HIV preexposure prophylaxix. In Proceedings of the Conference on Retroviruses and Opportunistic Infections, Seattle, WA, USA, 13–16 February 2017. [Google Scholar]
- Margolis, D.A.; Gonzalez-Garcia, J.; Stellbrink, H.J.; Eron, J.J.; Yazdanpanah, Y.; Podzamczer, D.; Lutz, T.; Angel, J.B.; Richmond, G.J.; Clotet, B.; et al. Long-acting intramuscular cabotegravir and rilpivirine in adults with HIV-1 infection (latte-2): 96-week results of a randomised, open-label, phase 2b, non-inferiority trial. Lancet 2017, 390, 1499–1510. [Google Scholar] [CrossRef]
- Margolis, D.A.; Brinson, C.C.; Smith, G.H.R.; de Vente, J.; Hagins, D.P.; Eron, J.J.; Griffith, S.K.; Clair, M.H.S.; Stevens, M.C.; Williams, P.E.; et al. Cabotegravir plus rilpivirine, once a day, after induction with cabotegravir plus nucleoside reverse transcriptase inhibitors in antiretroviral-naive adults with HIV-1 infection (latte): A randomised, phase 2b, dose-ranging trial. Lancet Infect. Dis. 2015, 15, 1145–1155. [Google Scholar] [CrossRef]
- Al-Salama, Z.T. Elsulfavirine: First global approval. Drugs 2017, 77, 1811–1816. [Google Scholar] [CrossRef] [PubMed]
- Namasivayam, V.; Vanangamudi, M.; Kramer, V.G.; Kurup, S.; Zhan, P.; Liu, X.; Kongsted, J.; Byrareddy, S.N. The journey of HIV-1 non-nucleoside reverse transcriptase inhibitors (nnrtis) from lab to clinic. J. Med. Chem. 2018. [Google Scholar] [CrossRef]
- Rai, M.A.; Pannek, S.; Fichtenbaum, C.J. Emerging reverse transcriptase inhibitors for HIV-1 infection. Expert Opin Emerg Drugs 2018, 23, 149–157. [Google Scholar] [CrossRef] [PubMed]
- Hill, K.J.; Rogers, L.C.; Njenda, D.T.; Burke, D.H.; Sarafianos, S.G.; Sonnerborg, A.; Neogi, U.; Singh, K. Strain-specific effect on biphasic DNA binding by HIV-1 integrase. AIDS 2019, 33, 588–592. [Google Scholar] [CrossRef] [PubMed]
- Passos, D.O.; Li, M.; Yang, R.; Rebensburg, S.V.; Ghirlando, R.; Jeon, Y.; Shkriabai, N.; Kvaratskhelia, M.; Craigie, R.; Lyumkis, D. Cryo-em structures and atomic model of the HIV-1 strand transfer complex intasome. Science 2017, 355, 89–92. [Google Scholar] [CrossRef]
- Neogi, U.; Singh, K.; Aralaguppe, S.G.; Rogers, L.C.; Njenda, D.T.; Sarafianos, S.G.; Hejdeman, B.; Sonnerborg, A. Ex-vivo antiretroviral potency of newer integrase strand transfer inhibitors cabotegravir and bictegravir in HIV type 1 non-b subtypes. AIDS 2018, 32, 469–476. [Google Scholar]
- Oliveira, M.; Ibanescu, R.I.; Anstett, K.; Mesplede, T.; Routy, J.P.; Robbins, M.A.; Brenner, B.G.; Montreal Primary, H.I.V.C.S.G. Selective resistance profiles emerging in patient-derived clinical isolates with cabotegravir, bictegravir, dolutegravir, and elvitegravir. Retrovirology 2018, 15, 56. [Google Scholar] [CrossRef]
- Landovitz, R.J.; Li, S.; Grinsztejn, B.; Dawood, H.; Liu, A.Y.; Magnus, M.; Hosseinipour, M.C.; Panchia, R.; Cottle, L.; Chau, G.; et al. Safety, tolerability, and pharmacokinetics of long-acting injectable cabotegravir in low-risk HIV-uninfected individuals: Hptn 077, a phase 2a randomized controlled trial. PLoS Med. 2018, 15, e1002690. [Google Scholar] [CrossRef]
- Swindells, S.; Andrade-Villanueva, J.-F.; Gary, J.; Richmond, G.J.; Rizzardini, G.; Baumgarten, A.; Maria Del Mar Masia Del Mar, M.; Latiff, G.; Pokrovsky, V.; Mrus, J.M.; et al. Long-acting cabotegravir+rilpivirine maintenance therapy: Atlas week 48 results. In Proceedings of the Conference on Retroviruses and Opportunistic Infections, Seattle, WA, USA, 4–7 March 2019. [Google Scholar]
- Orkin, C.; Arastéh, K.; Hernández-Mora, M.C.; Pokrovsky, V.; Overton, E.T.; Overton, M.-P.; Oka, S.; D’Amico, R.; Dorey, D.; Griffith, S.K.; et al. Long-acting cabotegravir + rilpivirine for HIV maintenance: Flair week 48 results. In Proceedings of the Conference on Retroviruses and Opportunistic Infections, Seattle, WA, USA, 4–7 March 2019. [Google Scholar]
- Kovarova, M.; Swanson, M.D.; Sanchez, R.I.; Baker, C.E.; Steve, J.; Spagnuolo, R.A.; Howell, B.J.; Hazuda, D.J.; Garcia, J.V. A long-acting formulation of the integrase inhibitor raltegravir protects humanized blt mice from repeated high-dose vaginal HIV challenges. J. Antimicrob. Chemother. 2016, 71, 1586–1596. [Google Scholar] [CrossRef]
- Brenner, B.G. Resistance and viral subtypes: How important are the differences and why do they occur? Curr. Opin. HIV AIDS 2007, 2, 94–102. [Google Scholar] [CrossRef]
- Lessells, R.J.; Katzenstein, D.K.; de Oliveira, T. Are subtype differences important in HIV drug resistance? Curr. Opin. Virol. 2012, 2, 636–643. [Google Scholar] [CrossRef]
- Wainberg, M.A.; Brenner, B.G. The impact of HIV genetic polymorphisms and subtype differences on the occurrence of resistance to antiretroviral drugs. Mol. Biol. Int. 2012, 2012, 256982. [Google Scholar] [CrossRef] [PubMed]
- Sluis-Cremer, N.; Jordan, M.R.; Huber, K.; Wallis, C.L.; Bertagnolio, S.; Mellors, J.W.; Parkin, N.T.; Harrigan, P.R. E138a in HIV-1 reverse transcriptase is more common in subtype c than b: Implications for rilpivirine use in resource-limited settings. Antivir. Res. 2014, 107, 31–34. [Google Scholar] [CrossRef]
- Giannini, A.; Vicenti, I.; Materazzi, A.; Boccuto, A.; Dragoni, F.; Zazzi, M.; Saladini, F. The HIV-1 reverse transcriptase e138a natural polymorphism decreases the genetic barrier to resistance to etravirine in vitro. J. Antimicrob. Chemother. 2019, 74, 607–613. [Google Scholar] [CrossRef]
- Tambuyzer, L.; Nijs, S.; Daems, B.; Picchio, G.; Vingerhoets, J. Effect of mutations at position e138 in HIV-1 reverse transcriptase on phenotypic susceptibility and virologic response to etravirine. J. Acquir. Immune Defic. Syndr. 2011, 58, 18–22. [Google Scholar] [CrossRef] [PubMed]
- Tebit, D.M.; Lobritz, M.; Lalonde, M.; Immonen, T.; Singh, K.; Sarafianos, S.; Herchenroder, O.; Krausslich, H.G.; Arts, E.J. Divergent evolution in reverse transcriptase (rt) of HIV-1 group o and m lineages: Impact on structure, fitness, and sensitivity to nonnucleoside rt inhibitors. J. Virol. 2010, 84, 9817–9830. [Google Scholar] [CrossRef]
- Charpentier, C.; Descamps, D. Resistance to HIV integrase inhibitors: About r263k and e157q mutations. Viruses 2018, 10, 41. [Google Scholar] [CrossRef] [PubMed]
- Radzio, J.; Council, O.; Cong, M.-E.; Mitchell, J.; Ellis, S.; Huang, W.; Spreen, W.; Heneine, W.; Garcia-Lerma, G. Resistance emergence in macaques administered cabotegravir la during acute infection. In Proceedings of the Conference on Retroviruses and Opportunistic Infections 2017, Seattle, WA, USA, 13–16 February 2017. [Google Scholar]
- Wensing, A.M.; Calvez, V.; Gunthard, H.F.; Johnson, V.A.; Paredes, R.; Pillay, D.; Shafer, R.W.; Richman, D.D. 2017 update of the drug resistance mutations in HIV-1. Top. Antivir. Med. 2017, 24, 132–133. [Google Scholar]
- Rogers, L.; Obasa, A.E.; Jacobs, G.B.; Sarafianos, S.G.; Sönnerborg, A.; Neogi, U.; Singh, K. Structural implications of genotypic variations in HIV-1 integrase from diverse subtypes. Front. Microbiol. 2018, 9, 1754. [Google Scholar] [CrossRef]
- Gashnikova, N.M.; Astakhova, E.M.; Gashnikova, M.P.; Bocharov, E.F.; Petrova, S.V.; Pun′ko, O.A.; Popkov, A.V.; Totmenin, A.V. HIV-1 epidemiology, genetic diversity, and primary drug resistance in the tyumen oblast, russia. Biomed. Res. Int. 2016, 2016, 2496280. [Google Scholar] [CrossRef] [PubMed]
- Lapovok, I.; Laga, V.; Kazennova, E.; Bobkova, M. HIV type 1 integrase natural polymorphisms in viral variants circulating in fsu countries. Curr. HIV Res. 2017, 15, 318–326. [Google Scholar] [CrossRef] [PubMed]
- Gupta, R.K.; Chrystie, I.L.; O’Shea, S.; Mullen, J.E.; Kulasegaram, R.; Tong, C.Y. K65r and y181c are less prevalent in haart-experienced HIV-1 subtype a patients. AIDS 2005, 19, 1916–1919. [Google Scholar] [CrossRef]
- Doualla-Bell, F.; Avalos, A.; Brenner, B.; Gaolathe, T.; Mine, M.; Gaseitsiwe, S.; Oliveira, M.; Moisi, D.; Ndwapi, N.; Moffat, H.; et al. High prevalence of the k65r mutation in human immunodeficiency virus type 1 subtype c isolates from infected patients in botswana treated with didanosine-based regimens. Antimicrob. Agents Chemother. 2006, 50, 4182–4185. [Google Scholar] [CrossRef] [PubMed]
- Skhosana, L.; Steegen, K.; Bronze, M.; Lukhwareni, A.; Letsoalo, E.; Papathanasopoulos, M.A.; Carmona, S.C.; Stevens, W.S. High prevalence of the k65r mutation in HIV-1 subtype c infected patients failing tenofovir-based first-line regimens in south africa. PLoS ONE 2015, 10, e0118145. [Google Scholar] [CrossRef] [PubMed]
- Smit, E.; White, E.; Clark, D.; Churchill, D.; Zhang, H.; Collins, S.; Pillay, D.; Sabin, C.; Nelson, M.; Winston, A.; et al. An association between k65r and HIV-1 subtype c viruses in patients treated with multiple nrtis. J. Antimicrob. Chemother. 2017, 72, 2075–2082. [Google Scholar] [CrossRef] [PubMed]
- Chan, P.A.; Huang, A.; Kantor, R. Low prevalence of transmitted k65r and other tenofovir resistance mutations across different HIV-1 subtypes: Implications for pre-exposure prophylaxis. J. Int. AIDS Soc. 2012, 15, 17701. [Google Scholar] [CrossRef]
- TenoRes Study, G. Global epidemiology of drug resistance after failure of who recommended first-line regimens for adult HIV-1 infection: A multicentre retrospective cohort study. Lancet Infect. Dis. 2016, 16, 565–575. [Google Scholar]
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