Design, Synthesis, Antiproliferative Potency and In Silico Studies of Novel Alkynyl Quinazolines as Potential EGFR Inhibitors
Abstract
1. Introduction

| Compound | EGFR (Active State) | EGFR (Inactive State) | ||||
|---|---|---|---|---|---|---|
| ΔGcalc (kcal/mol) | Kiest (μM) | ΔGcalc (kcal/mol) | Kiest (μM) | R1 | R2 | |
| Erlotinib | −7.0 | 7.2 | n.d. | n.d. | ||
| TAK-285 | n.d. | n.d. | −9.8 | 0.06 | ||
| QN009 | n.d. | n.d. | −8.6 | 0.52 | ![]() | ![]() |
| QN010 | −7.8 | 1.8 | −8.3 | 0.90 | ![]() | ![]() |
| QN011 | −7.5 | 3.2 | −7.9 | 1.64 | ![]() | ![]() |
| QN012 (6e) | −7.6 | 2.8 | −9.6 | 0.09 | ![]() | ![]() |
| QN013 | −7.6 | 2.7 | −7.9 | 1.55 | ![]() | ![]() |
| QN014 | −8.0 | 1.4 | n.d. | n.d. | ![]() | ![]() |
| QN015 | −8.6 | 0.5 | n.d. | n.d. | ![]() | ![]() |
| QN016 | −8.2 | 0.9 | −8.3 | 0.80 | ![]() | ![]() |
| QN017 (6a) | −8.5 | 0.6 | −8.7 | 0.43 | ![]() | ![]() |
| QN019 (6b) | −8.4 | 0.7 | −9.1 | 0.22 | ![]() | ![]() |
| QN020 | −8.2 | 1.0 | −8.3 | 0.81 | ![]() | ![]() |
| QN021 | −8.2 | 1.0 | −8.3 | 0.80 | ![]() | ![]() |
| QN022 (6d) | −8.2 | 1.1 | −9.0 | 0.25 | ![]() | ![]() |
| QN023 (6c) | −8.2 | 1.0 | −8.7 | 0.43 | ![]() | ![]() |
| QN024 | n.d. | n.d. | n.d. | n.d. | ![]() | ![]() |
| QN025 | −8.0 | 1.5 | −8.2 | 0.97 | ![]() | ![]() |
| QN026 | −8.2 | 1.0 | −8.6 | 0.51 | ![]() | ![]() |
| QN027 | −7.9 | 1.6 | −8.6 | 0.52 | ![]() | ![]() |
2. Results and Discussion
2.1. Molecular Docking
2.2. Chemistry
2.3. Biological Evaluation
2.3.1. Cytotoxic/Cytostatic Activity
2.3.2. Effects on the Cell Cycle
2.3.3. Effects on EGFR Activation
3. Materials and Methods
3.1. Chemistry
3.2. Biological Evaluation
3.2.1. Cell Culture and Assessment of Cytotoxic/Cytostatic Activity
3.2.2. Flow Cytometric Cell Cycle Analysis
3.2.3. Immunoblot Analysis
3.3. Computational Methods
4. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
Abbreviations
| DMEM | Dulbecco’s minimal essential medium |
| DMSO | dimethyl sulfoxide |
| EGF | epidermal growth factor |
| EGFR | epidermal growth factor receptor |
| NSCLC | non-small-cell lung cancer |
| DMF | N,N-Dimethylformamide |
| i-PrOH | isopropanol |
| Pd(PPh3)4 | tetrakis(triphenylphosphine) palladium (0) |
| SOCl2 | thionyl chloride |
| EtOAc | ethyl acetate |
| CuI | copper(I) Iodide |
| CH3COOH | acetic acid |
| MTT | 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide |
| PBS | phosphate-buffered saline |
| TBS | tris-buffered saline |
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| Compound | IC50 (μM) 1 | ||||
|---|---|---|---|---|---|
| A431 | A549 | MDA-MB-231 | PC-3 | Normal Fibroblasts | |
| 6a (QN017) | 40.0 (±14.7) | 24.0 (±5.6) | 83.4 (±19.4) | 49.6 (±11.5) | 40.1 (±9.3) |
| 6b (QN019) | 63.2 (±3.9) | 42.5 (±10.3) | 114.9 (±28.0) | 87.1 (±21.2) | 121.5 (±29.6) |
| 6c (QN023) | 27.2 (±3.5) | 1.5 (±0.5) | 63.3 (±14.7) | 33.8 (±7.9) | 32.8 (±7.6) |
| 6d (QN022) | 26.4 (±6.4) | 12.7 (±1.7) | 61.5 (±15.0) | 172.9 (±42.1) | 51.0 (±12.4) |
| 6e (QN012) | 32.7 (±11.8) | 50.5 (±18.6) | 56.6 (±20.8) | 13.1 (±4.8) | 27.0 (±9.9) |
| Doxorubicin hydrochloride | 0.013 (±0.005) | 0.132 (±0.011) | 0.103 (±0.045) | 0.345 (±0.133) | 0.258 (±0.101) |
| Compound | Sub-Diploid (%) | G0/G1 (%) | S (%) | G2/M (%) |
|---|---|---|---|---|
| 6a (QN017) | 0.01 (±0.01) 1 | 75.69 (±0.79) | 19.29 (±0.68) | 5.02 (±0.35) |
| 6b (QN019) | 0.03 (±0.02) | 90.72 (±0.86) | 8.28 (±0.10) | 1.00 (±0.82) |
| 6c (QN023) | 0.00 (±0.00) | 81.02 (±0.63) | 13.86 (±0.28) | 5.12 (±0.39) |
| 6d (QN022) | 0.05 (±0.08) | 79.44 (±0.13) | 15.31 (±0.48) | 5.25 (±0.43) |
| 6e (QN012) | 0.05 (±0.04) | 65.54 (±0.54) | 25.00 (±0.79) | 9.47 (±0.31) |
| Control | 0.11 (±0.14) | 56.84 (±0.45) | 32.01 (±0.22) | 11.16 (±0.25) |
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Gkoutzivelaki, A.; Triantopoulou, S.-I.; Chiniadis, L.; Komiotis, A.; Triantis, C.; Komiotis, D.; Papakyriakou, A.; Pratsinis, H.; Manta, S. Design, Synthesis, Antiproliferative Potency and In Silico Studies of Novel Alkynyl Quinazolines as Potential EGFR Inhibitors. Int. J. Mol. Sci. 2026, 27, 1738. https://doi.org/10.3390/ijms27041738
Gkoutzivelaki A, Triantopoulou S-I, Chiniadis L, Komiotis A, Triantis C, Komiotis D, Papakyriakou A, Pratsinis H, Manta S. Design, Synthesis, Antiproliferative Potency and In Silico Studies of Novel Alkynyl Quinazolines as Potential EGFR Inhibitors. International Journal of Molecular Sciences. 2026; 27(4):1738. https://doi.org/10.3390/ijms27041738
Chicago/Turabian StyleGkoutzivelaki, Apostolia, Sotiria-Iro Triantopoulou, Lykourgos Chiniadis, Alexandros Komiotis, Charalampos Triantis, Dimitri Komiotis, Athanasios Papakyriakou, Harris Pratsinis, and Stella Manta. 2026. "Design, Synthesis, Antiproliferative Potency and In Silico Studies of Novel Alkynyl Quinazolines as Potential EGFR Inhibitors" International Journal of Molecular Sciences 27, no. 4: 1738. https://doi.org/10.3390/ijms27041738
APA StyleGkoutzivelaki, A., Triantopoulou, S.-I., Chiniadis, L., Komiotis, A., Triantis, C., Komiotis, D., Papakyriakou, A., Pratsinis, H., & Manta, S. (2026). Design, Synthesis, Antiproliferative Potency and In Silico Studies of Novel Alkynyl Quinazolines as Potential EGFR Inhibitors. International Journal of Molecular Sciences, 27(4), 1738. https://doi.org/10.3390/ijms27041738





































