Melatonin at Crossroads with Phytohormones: Interactions Under High Light Stress
Abstract
1. Introduction
2. Results
2.1. Melatonin Triggers Protective Physiological Responses Under Excess Light
2.2. Transcriptional Regulation of Hormone-Related MT Targets Under HL Stress
2.2.1. ABA-Related Genes
2.2.2. Ethylene-Related Genes
2.2.3. JA- and SA-Related Genes
2.2.4. Auxin-Related Genes
2.2.5. Brassinosteroid-Related Genes
2.2.6. Cytokinin-Related Genes
2.3. Validation of Hormone-Related Genes Identified by RNA-Seq Analysis
2.4. Selective Involvement of CAND2 in the MT-Related Responses of Hormone Genes
2.5. The Role of Hormone Signalling in MT-Triggered Responses
3. Discussion
4. Materials and Methods
4.1. Plant Material, Growth Conditions and Treatments
4.2. Stress Tolerance Tests
4.3. Determination of Pigments and Fluorometry
4.4. RNA Extraction, Library Construction, and RNA Sequencing
4.5. Differential Expression and Ontology Enrichment Analyses
Quantitative Real-Time Polymerase Chain 260 (qRT–PCR)
4.6. Statistical Data Processing
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
- Arnao, M.B.; Hernández-Ruiz, J. Melatonin: A new plant hormone and/or a plant master regulator? Trends Plant Sci. 2019, 24, 38–48. [Google Scholar] [CrossRef] [Scilit]
- Kusnetsov, V.V.; Bychkov, I.A.; Kudryakova, N.V. Phytomelatonin As an Element of the Plant Hormonal System. Russ. J. Plant Physiol. 2024, 71, 134. [Google Scholar] [CrossRef] [Scilit]
- Tan, D.X.; Reiter, R.J. An evolutionary view of melatonin synthesis and metabolism related to its biological functions in plants. J. Exp. Bot. 2020, 71, 4677. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Back, K.; Tan, D.X.; Reiter, R.J. Melatonin biosynthesis in plants: Multiple pathways catalyze tryptophan to melatonin in the cytoplasm or chloroplasts. J. Pineal Res. 2016, 61, 426–437. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Chen, Q.; Chen, Y.; Li, X.; Zhang, L.; Rengel, Z. Phytomelatonin: Biosynthesis, signaling, and functions. Annu. Rev. Plant Biol. 2025, 76, 171–195. [Google Scholar] [CrossRef] [Scilit]
- Wang, Y.; Reiter, R.J.; Chan, Z. Phytomelatonin: A universal abiotic stress regulator. J. Exp. Bot. 2018, 69, 963–974. [Google Scholar] [CrossRef] [Scilit]
- Ma, X.; Zhang, J.; Burgess, O.; Rossi, S.; Huang, B. Interactive effects of melatonin and cytokinin on alleviating drought induced leaf senescence in creeping bentgrass (Agrostis stolonifera). Environ. Exp. Bot. 2018, 145, 1–11. [Google Scholar] [CrossRef] [Scilit]
- Bychkov, I.A.; Andreeva, A.A.; Kudryakova, N.V.; Kusnetsov, V.V. Cytokinin modulates responses to phytomelatonin in Arabidopsis thaliana under high light stress. Int. J. Mol. Sci. 2023, 24, 738. [Google Scholar] [CrossRef] [Scilit]
- Zhang, H.J.; Zhang, N.; Yang, R.C.; Wang, L.; Sun, Q.Q.; Li, D.B.; Cao, Y.Y.; Weeda, S.; Zhao, B.; Ren, S.; et al. Melatonin promotes seed germination under high salinity by regulating antioxidant systems, ABA and GA-interaction in cucumber (Cucumis sativus L.). J. Pineal Res. 2014, 57, 269–679. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Hwang, O.J.; Back, K. Melatonin is involved in skotomorphogenesis by regulating brassinosteroids biosynthesis in rice plants. J. Pineal Res. 2018, 65, e12495. [Google Scholar] [CrossRef] [Scilit]
- Lee, K.; Back, K. Melatonin-deficient rice plants show a common semidwarf phenotype either dependent or independent of brassinosteroid biosynthesis. J. Pineal Res. 2018, 66, e12537. [Google Scholar] [CrossRef] [Scilit]
- Xiong, F.; Zhuo, F.; Reiter, R.J.; Wang, L.; Wei, Z.; Deng, K.; Song, Y.; Qanmber, G.; Feng, L.; Yang, Z.; et al. Hypocotyl Elongation Inhibition of Melatonin Is Involved in Repressing Brassinosteroid Biosynthesis in Arabidopsis. Front. Plant Sci. 2019, 10, 1082. [Google Scholar] [CrossRef] [Scilit]
- Ai, Y.; Zhu, Z. Melatonin antagonizes jasmonate-triggered anthocyanin biosynthesis in Arabidopsis thaliana. J. Agric. Food. Chem. 2018, 66, 5392–5400. [Google Scholar] [CrossRef] [Scilit]
- Lee, H.Y.; Byeon, Y.; Tan, D.-X.; Reiter, R.J.; Back, K. Arabidopsis serotonin N-acetyltransferase knockout mutant plants exhibit decreased melatonin and salicylic acid levels resulting in susceptibility to an avirulent pathogen. J. Pineal Res. 2015, 58, 291–299. [Google Scholar] [CrossRef] [Scilit]
- Yue, L.; Kang, Y.; Zhong, M.; Kang, D.; Zhao, P.; Chai, X.; Yang, X. Melatonin delays postharvest senescence through suppressing the inhibition of BrERF2/BrERF109 on flavonoid biosynthesis in flowering Chinese cabbage. Int. J. Mol. Sci. 2023, 24, 2933. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Xu, L.; Zhu, Y.; Wang, Y.; Zhang, L.; Li, L.; Looi, L.J.; Zhang, Z. The potential of melatonin and its crosstalk with other hormones in the fight against stress. Front. Plant Sci. 2024, 15, 1492036. [Google Scholar] [CrossRef] [Scilit]
- Weeda, S.; Zhang, N.; Zhao, X.; Ndip, G.; Guo, Y.; Buck, G.A.; Fu, C.; Ren, S. Arabidopsis transcriptome analysis reveals key roles of melatonin in plant defense systems. PLoS ONE 2014, 9, e93462. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Wan, J.; Zhang, P.; Wang, R.; Sun, L.; Ju, Q.; Xu, J. Comparative physiological responses and transcriptome analysis reveal the roles of melatonin and serotonin in regulating growth and metabolism in Arabidopsis. BMC Plant Biol. 2018, 18, 362. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Hardeland, R. Melatonin in plants-diversity of levels and multiplicity of functions. Front. Plant Sci. 2016, 7, 198. [Google Scholar] [CrossRef] [Scilit]
- Kleine, T.; Kindgren, P.; Benedict, C.; Hendrickson, L.; Strand, A. Genome-wide gene expression analysis reveals a critical role for CRYPTOCHROME1 in the response of Arabidopsis to high irradiance. Plant Physiol. 2007, 144, 1391–1406. [Google Scholar] [CrossRef] [Scilit]
- Bychkov, I.A.; Kudryakova, N.V.; Shagimardanova, E.I.; Klepikova, A.V.; Pojidaeva, E.S.; Schelkunov, M.I.; Baikuzina, P.G.; Doroshenko, A.S.; Shitikova, V.V.; Kusnetsov, V.V. Melatonin Mediated Photoprotection in Arabidopsis: Insights from RNA-Seq Analysis. Russ. J. Plant Physiol. 2025, 72, 169. [Google Scholar] [CrossRef] [Scilit]
- Bychkov, I.; Kudryakova, N.; Pojidaeva, E.S.; Doroshenko, A.; Shitikova, V.; Kusnetsov, V. ABA and Melatonin: Players on the Same Field? Int. J. Mol. Sci. 2024, 25, 12266. [Google Scholar] [CrossRef] [Scilit]
- Gao, Y.; Zeng, Q.; Guo, J.; Cheng, J.; Ellis, B.E.; Chen, J.G. Genetic characterization reveals no role for the reported ABA receptor, GCR2, in ABA control of seed germination and early seedling development in Arabidopsis. Plant J. 2007, 52, 1001–1013. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Shi, Y.; Ke, X.; Yang, X.; Liu, Y.; Hou, X. Plants response to light stress. J. Genet. Genomics. 2022, 49, 735–747. [Google Scholar] [CrossRef] [Scilit]
- Kim, H.; Go, Y.S.; Suh, M.C. DEWAX2 Transcription Factor Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Leaves. Plant Cell Physiol. 2018, 59, 966–977. [Google Scholar] [CrossRef] [Scilit]
- Sanhueza, D.; Begum, R.A.; Albenne, C.; Jamet, E.; Stephen, C.; An, F. Arabidopsis thaliana arabinogalactan-protein (AGP31) and several cationic AGP fragments catalyse the boron bridging of rhamnogalacturonan-II. Biochem. J. 2022, 479, 1967–1984. [Google Scholar] [CrossRef] [Scilit]
- Tan, X.; Long, W.; Zeng, L.; Ding, X.; Cheng, Y.; Zhang, X.; Zou, X. Melatonin-induced transcriptome variation of rapeseed seedlings under salt stress. Int. J. Mol. Sci. 2019, 20, 5355. [Google Scholar] [CrossRef] [Scilit]
- Caarls, L.; Elberse, J.; Awwanah, M.; Ludwig, N.R.; de Vries, M.; Zeilmaker, T.; Van Wees, S.C.M.; Schuurink, R.C.; Van den Ackerveken, G. Arabidopsis JASMONATE-INDUCED OXYGENASES down-regulate plant immunity by hydroxylation and inactivation of the hormone jasmonic acid. Proc. Natl. Acad. Sci. USA 2017, 14, 6388–6393. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Mur, L.A.; Kenton, P.; Atzorn, R.; Miersch, O.; Wasternack, C. The outcomes of concentration-specific interactions between salicylate and jasmonate signaling include synergy, antagonism, and oxidative stress leading to cell death. Plant Physiol. 2006, 140, 249–262. [Google Scholar] [CrossRef] [Scilit]
- Sohani, M.M.; Schenk, P.M.; Schultz, C.J.; Schmidt, O. Phylogenetic and transcriptional analysis of a strictosidine synthase-like gene family in Arabidopsis thaliana reveals involvement in plant defence responses. Plant Biol. 2009, 11, 105–117. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Ren, H.; Gray, W.M. SAUR Proteins as Effectors of Hormonal and Environmental Signals in Plant Growth. Mol. Plant 2015, 8, 1153–1164. [Google Scholar] [CrossRef] [Scilit]
- Suzuki, T.; Matsushima, C.; Nishimura, S.; Higashiyama, T.; Sasabe, M.; Machida, Y. Identification of Phosphoinositide-binding Protein PATELLIN2 as a Substrate of Arabidopsis MPK4 MAP Kinase during Septum Formation in Cytokinesis. Plant Cell Physiol. 2016, 57, pcw098. [Google Scholar] [CrossRef] [Scilit]
- Kamimoto, Y.; Terasaka, K.; Hamamoto, M.; Takanashi, K.; Fukuda, S.; Shitan, N.; Sugiyama, A.; Suzuki, H.; Shibata, D.; Wang, B.; et al. Arabidopsis ABCB21 is a facultative auxin importer/exporter regulated by cytoplasmic auxin concentration. Plant Cell Physiol. 2012, 53, 2090–2100. [Google Scholar] [CrossRef] [Scilit]
- Kami, C.; Allenbach, L.; Zourelidou, M.; Ljung, K.; Schütz, F.; Isono, E.; Watahiki, M.K.; Yamamoto, K.T.; Schwechheimer, C.; Fankhauser, C. Reduced phototropism in pks mutants may be due to altered auxin-regulated gene expression or reduced lateral auxin transport. Plant J. 2014, 77, 393–403. [Google Scholar] [CrossRef] [Scilit]
- Hu, Y.; Xie, Q.; Chua, N.-H. The Arabidopsis Auxin-Inducible Gene ARGOS Controls Lateral Organ Size. Plant Cell 2003, 15, 1951–1961. [Google Scholar] [CrossRef] [Scilit]
- Roy, S.; Saxena, S.; Sinha, A.; Nandi, A.K. DORMANCY/AUXIN ASSOCIATED FAMILY PROTEIN 2 of Arabidopsis thaliana is a negative regulator of local and systemic acquired resistance. J. Plant Res. 2020, 133, 409–417. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Kushwah, S.; Banasiak, A.; Nishikubo, N.; Derba-Maceluch, M.; Majda, M.; Endo, S.; Kumar, V.; Gomez, L.; Gorzsas, A.; McQueen-Mason, S.; et al. Arabidopsis XTH4 and XTH9 Contribute to Wood Cell Expansion and Secondary Wall Formation. Plant Physiol. 2020, 182, 1946–1965. [Google Scholar] [CrossRef] [Scilit]
- Zhang, S.; Wei, Y.; Lu, Y.; Wang, X. Mechanisms of brassinosteroids interacting with multiple hormones. Plant Signal Behav. 2009, 4, 1117–1120. [Google Scholar] [CrossRef] [Scilit]
- Sun, Y.; Fan, X.Y.; Cao, D.M.; Tang, W.; He, K.; Zhu, J.Y.; He, J.X.; Bai, M.Y.; Zhu, S.; Oh, E.; et al. Integration of brassinosteroid signal transduction with the transcription network for plant growth regulation in Arabidopsis. Dev. Cell 2010, 19, 765–777. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Park, J.; Lee, S.; Park, G.; Cho, H.; Choi, D.; Umeda, M.; Choi, Y.; Hwang, D.; Hwang, I. CYTOKININ-RESPONSIVE GROWTH REGULATOR regulates cell expansion and cytokinin-mediated cell cycle progression. Plant Physiol. 2021, 186, 1734–1746. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Kim, H.J.; Chiang, Y.H.; Kieber, J.J.; Schaller, G.E. SCF(KMD) controls cytokinin signaling by regulating the degradation of type-B response regulators. Proc. Natl. Acad. Sci. USA 2013, 110, 10028–10033, Correction in Proc. Natl. Acad. Sci. USA 2013, 111, 7161. [Google Scholar] [CrossRef] [Scilit]
- Ha, S.; Vankova, R.; Yamaguchi-Shinozaki, K.; Shinozaki, K.; Tran, L.S. Cytokinins: Metabolism and function in plant adaptation to environmental stresses. Trends Plant Sci. 2012, 17, 172–179. [Google Scholar] [CrossRef] [Scilit]
- Malinovsky, F.G.; Batoux, M.; Schwessinger, B.; Youn, J.H.; Stransfeld, L.; Win, J.; Kim, S.K.; Zipfel, C. Antagonistic regulation of growth and immunity by the Arabidopsis basic helix-loop-helix transcription factor homolog of brassinosteroid enhanced expression interacting with increased leaf inclination1 binding bHLH1. Plant Physiol. 2014, 164, 1443–1455. [Google Scholar] [CrossRef] [Scilit]
- Shugaeva, N.A.; Bychkov, I.A.; Kudryakova, N.V.; Butsanets, P.A.; Shugaev, A.G.; Kusnetsov, V.V. Effects of Melatonin and Intense Light on Respiration and Mitochondrial Gene Expression in Leaves of Wild-Type and Brassinosteroid Mutants of Arabidopsis thaliana. Russ. J. Plant Physiol. 2025, 72, 193. [Google Scholar] [CrossRef] [Scilit]
- Huang, J.; Zhao, X.; Chory, J. The Arabidopsis transcriptome responds specifically and dynamically to high light stress. Cell Rep. 2019, 29, 4186–4199. [Google Scholar] [CrossRef] [Scilit]
- Bobrovskikh, A.V.; Zubairova, U.S.; Doroshkov, A.V. Identification of Key Differentially Expressed Genes in Arabidopsis thaliana Under Short- and Long-Term High Light Stress. Int. J. Mol. Sci. 2025, 26, 7790. [Google Scholar] [CrossRef] [Scilit]
- Tan, X.-L.; Fan, Z.-Q.; Kuang, J.-F.; Lu, W.-J.; Reiter, R.J.; Lakshmanan, P.; Su, X.-G.; Zhou, J.; Chen, J.Y.; Shan, W. Melatonin delays leaf senescence of Chinese flowering cabbage by suppressing ABFs-mediated abscisic acid biosynthesis and chlorophyll degradation. J. Pineal Res. 2019, 67, e12570. [Google Scholar] [CrossRef] [Scilit]
- Mandadi, K.K.; Misra, A.; Ren, S.; McKnight, T.D. BT2, a BTB protein, mediates multiple responses to nutrients, stresses, and hormones in Arabidopsis. Plant Physiol. 2009, 150, 1930–1939. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Robert, H.S.; Quint, A.; Brand, D.; Vivian-Smith, A.; Offringa, R. BTB and TAZ domain scaffold proteins perform a crucial function in Arabidopsis development. Plant J. 2009, 58, 109–121. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Back, K. Melatonin metabolism, signaling and possible roles in plants. Plant J. 2021, 105, 376–391. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Altmann, M.; Altmann, S.; Rodriguez, P.A.; Weller, B.; Elorduy-Vergara, L.; Palme, J.; Marin-de la Rosa, N.; Sauer, M.; Wenig, M.; Villaecija-Aguilar, J.A.; et al. Extensive signal integration by the phytohormone protein network. Nature 2020, 583, 271–276, Correction in Nature 2020, 584, E34. [Google Scholar] [CrossRef] [Scilit]
- Danquah, A.; de Zélicourt, A.; Boudsocq, M.; Neubauer, J.; Frei Dit Frey, N.; Leonhardt, N.; Pateyron, S.; Gwinner, F.; Tamby, J.P.; Ortiz-Masia, D.; et al. Identification and characterization of an ABA-activated MAP kinase cascade in Arabidopsis thaliana. Plant J. 2015, 82, 232–244. [Google Scholar] [CrossRef] [Scilit]
- Heath, L.R.; Packer, L. Photoperoxidation in isolated chloroplasts: I. Kinetics and stoichiometry of fatty acid perox-idation. Arch. Biochem. Biophys. 1968, 125, 189–198. [Google Scholar] [CrossRef] [Scilit]
- Campos, P.S.; Quartin, V.N.; Ramalho, J.C.; Nunes, M.A. Electrolyte leakage and lipid degradation account for cold sensitivity in leaves of Coffea sp. plants. J. Plant Physiol. 2003, 160, 283–292. [Google Scholar] [CrossRef] [Scilit]
- Kumar, C.N.; Knowles, N.R. Changes in lipid peroxidation and lipolytic and freeradical scavenging enzyme during aging and sprouting of potato (Solanum tuberosum L.) seed-tubers. Plant Physiol. 1993, 102, 115–124. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Nahar, K.; Hasanuzzaman, M.; Alam, M.M.; Fujita, M. Glutathione-induced drought stress tolerance in mung bean: Coordinated roles of the antioxidant defence and methylglyoxal detoxification systems. AoB Plants 2015, 7, plv069. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Giannopolitis, C.N.; Ries, S.K. Superoxide dismutases: I. Occurrence in higher plants. Plant Physiol. 1979, 59, 309–314. [Google Scholar] [CrossRef] [Scilit]
- Shevyakova, N.I.; Stetsenko, A.; Meshcheryakov, A.B.; Kuznetsov, V.V. The activity of the peroxidase system in the course of stress-induced CAM development. Russ. J. Plant Physiol. 2002, 49, 598–604. [Google Scholar] [CrossRef] [Scilit]
- Lichtenthaler, H.K. Chlorophylls and carotenoids: Pigments of photosynthetic biomembranes. Methods Enzymol. 1987, 148, 350–382. [Google Scholar] [CrossRef] [Scilit]
- Kozuleva, M.A.; Lysenko, E.A.; Klaus, A.A.; Kuznetsov, V.V. Long-term hyperthermia impairs activity of both photosystems. Dokl. Biochem. Biophys. 2017, 472, 71–73. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Bolger, A.M.; Lohse, M.; Usadel, B. Trimmomatic: A flexible trimmer for Illumina sequence data. Bioinformatics 2014, 30, 2114–2120. [Google Scholar] [CrossRef] [Scilit]
- Dobin, A.; Davis, C.A.; Schlesinger, F.; Drenkow, J.; Zaleski, C.; Jha, S.; Batut, P.; Chaisson, M.; Gingeras, T.R. STAR: Ultrafast universal RNA-seq aligner. Bioinformatics 2013, 29, 15–21. [Google Scholar] [CrossRef] [Scilit]
- Love, M.I.; Huber, W.; Anders, S. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol. 2014, 15, 550. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Huang, D.W.; Sherman, B.T.; Lempicki, R.A. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc. 2009, 4, 44–57. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Sherman, B.T.; Hao, M.; Qiu, J.; Jiao, X.; Baseler, M.W.; Lane, H.C.; Imamichi, T.; Chang, W. DAVID: A web server for functional enrichment analysis and functional annotation of gene lists (2021 update). Nucleic Acids Res. 2022, 50, w216–w221. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Nemhauser, J.L.; Hong, F.; Chory, J. Different plant hormones regulate similar processes through largely nonoverlapping transcriptional responses. Cell 2006, 126, 467–475. [Google Scholar] [CrossRef] [Scilit]









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Bychkov, I.A.; Kudryakova, N.V.; Shitikova, V.V.; Kusnetsov, V.V. Melatonin at Crossroads with Phytohormones: Interactions Under High Light Stress. Int. J. Mol. Sci. 2025, 26, 10531. https://doi.org/10.3390/ijms262110531
Bychkov IA, Kudryakova NV, Shitikova VV, Kusnetsov VV. Melatonin at Crossroads with Phytohormones: Interactions Under High Light Stress. International Journal of Molecular Sciences. 2025; 26(21):10531. https://doi.org/10.3390/ijms262110531
Chicago/Turabian StyleBychkov, Ivan A., Natalia V. Kudryakova, Victoria V. Shitikova, and Victor V. Kusnetsov. 2025. "Melatonin at Crossroads with Phytohormones: Interactions Under High Light Stress" International Journal of Molecular Sciences 26, no. 21: 10531. https://doi.org/10.3390/ijms262110531
APA StyleBychkov, I. A., Kudryakova, N. V., Shitikova, V. V., & Kusnetsov, V. V. (2025). Melatonin at Crossroads with Phytohormones: Interactions Under High Light Stress. International Journal of Molecular Sciences, 26(21), 10531. https://doi.org/10.3390/ijms262110531

