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Review

Monofluoromethylation of N-Heterocyclic Compounds

by
Mikhail Yu. Moskalik
A.E. Favorsky Irkutsk Institute of Chemistry, Siberian Division of the Russian Academy of Sciences, 1 Favorsky Street, 664033 Irkutsk, Russia
Int. J. Mol. Sci. 2023, 24(24), 17593; https://doi.org/10.3390/ijms242417593
Submission received: 30 November 2023 / Revised: 13 December 2023 / Accepted: 15 December 2023 / Published: 18 December 2023
(This article belongs to the Section Physical Chemistry and Chemical Physics)

Abstract

:
The review focuses on recent advances in the methodologies for the formation or introduction of the CH2F moiety in N-heterocyclic substrates over the past 5 years. The monofluoromethyl group is one of the most versatile fluorinated groups used to modify the properties of molecules in synthetic medical chemistry. The review summarizes two strategies for the monofluoromethylation of N-containing heterocycles: direct monofluoromethylation with simple XCH2F sources (for example, ICH2F) and the assembly of N-heterocyclic structures from CH2F-containing substrates. The review describes the monofluoromethylation of pharmaceutically important three-, five- and six-membered N-heterocycles: pyrrolidines, pyrroles, indoles, imidazoles, triazoles, benzothiazoles, carbazoles, indazoles, pyrazoles, oxazoles, piperidines, morpholines, pyridines, quinolines and pyridazines. Assembling of 6-fluoromethylphenanthridine, 5-fluoromethyl-2-oxazolines, C5-monofluorinated isoxazoline N-oxides, and α-fluoromethyl-α-trifluoromethylaziridines is also shown. Fluoriodo-, fluorchloro- and fluorbromomethane, FCH2SO2Cl, monofluoromethyl(aryl)sulfoniummethylides, monofluoromethyl sulfides, (fluoromethyl)triphenylphosphonium iodide and 2-fluoroacetic acid are the main fluoromethylating reagents in recent works. The replacement of atoms and entire functional groups with a fluorine atom(s) leads to a change and often improvement in activity, chemical or biostability, and pharmacokinetic properties. The monofluoromethyl group is a bioisoster of -CH3, -CH2OH, -CH2NH2, -CH2CH3, -CH2NO2 and -CH2SH moieties. Bioisosteric replacement with the CH2F group is both an interesting task for organic synthesis and a pathway to modify drugs, agrochemicals and useful intermediates.

1. Introduction

Heterocyclic cores are key building blocks for drug design and essential subunits presented in natural products, such as vitamins, hormones and antibiotics. Moreover, 85% of bioactive compounds include heterocyclic rings, and most of them are nitrogen heterocycles [1,2]. The predominance of N-heterocycles in biologically active compounds can be explained using their stability, efficiency, wide possibilities of chemical modification [3,4,5,6] and ability to form hydrogen bonds with DNA [1]. About 60% of small molecule drugs contain N-based heterocycles as common architectural cores [1]. Nitrogen-containing heterocycles are of particular importance, for example, in cancer chemotherapy [7]. Therefore, the task of synthesizing and modifying N-heterocycles is an important field of synthetic organic chemistry and medicinal chemistry [1,2,8].
The introduction of fluorine atoms is an effective approach to the development of new drugs and agrochemicals [9,10,11,12,13,14,15,16]. Fluorine atoms increase resistance to biological processes and permeability through cell membranes, provide good binding to enzyme targets and increase target selectivity. The properties of fluorine-containing substituents, and accordingly, the properties of the target molecules, as a rule, are significantly different from the properties of other halogenated and, especially, hydrogenated analogs [17]. Thus, organofluorine substrates are interesting objects for study in the fields of theoretical, synthetic, industrial and medicinal chemistry [18]. Fluorine is sterically similar to hydrogen, being at the same time the most electronegative element, which changes both spatial and electronic properties of fluorine-containing molecules compared to non-fluorinated molecular objects. Therefore, the introduction of a fluorine atom does not significantly increase the volume of the molecule, but conformational changes and changes in reactivity are often dramatic. Fluorine-containing substituents are used to modify the basicity or acidity of neighboring functional groups in molecules. Thus, the introduction of fluorine affects the ability to form hydrogen bonds, which are very important weak interactions playing a significant role in the stabilization of biopolymers [19].
Modern organofluorine chemistry studies the synthetic approaches for the modification of functional groups with fluorine to change the physicochemical and pharmacological properties of candidates for drugs, materials and synthetic intermediates. All this emphasizes the great importance of fluorine derivatives in medicinal [15,20,21,22,23,24], agricultural [25,26] and synthetic organic chemistry [24,27,28,29,30,31].
Fluoroalkylation is the main method for the selective and atom-economic synthesis of organic molecules containing fluorine in the side chain. Trifluoromethylation has been known for more than 40 years [32,33,34,35]. Monofluoromethylation is much less studied, and systematic investigations of monofluoromethylation were only recently developed. General information on monofluorination reactions to form monofluoroalkyl derivatives is well presented in the works [36,37,38]. The synthesis of fluoroalkylated sulfur heterocycles was described in a recent review [39].
The monofluoromethyl group is a universal bioisosteric moiety for many groups (-CH3, -CH2OH, -CH2NH2, -CH2CH3, -CH2NO2 and -CH2SH) in biologically active compounds [40,41,42].
There are a number of commonly used monofluoromethylated drugs on the market. For example, Afloqualone is a nicotine antagonist sold as a muscle relaxant. Fluticasone is a widely used anti-inflammatory and analgesic drug prescribed for certain tumors. The inhalational anesthetic Sevoflurane is the most known CH2F compound used since 1990 [36]. Some examples of approved or investigational drugs containing CH2F groups are presented in Table 1.

2. Monofluoromethylation of N-Containing Heterocycles

Monofluoromethylation of N-containing heterocycles includes two main methodologies: direct monofluoromethylation with simple XCH2F sources (for example, ICH2F) and assembly of N-heterocyclic structures from CH2F-containing substrates. CH2F-substituted heterocycles are of great importance as targets for the isosteric development of biologically active compounds.

2.1. Synthesis of Monofluoromethylated Aziridines

The synthesis of α-fluoromethyl-α-trifluoromethylaziridines 4 via the reaction of trifluoroactimidoyl chloride (TFAIC) 1 and lithium monohalocarbenoid was presented in the work [58] (Scheme 1). The reaction is an excellent example of carbenoid assembling of rare fluorinated aziridines 4.
The reaction proceeds through the aziridination of imine 1 with chloromethyl lithium, followed by treatment with a second equivalent of the fluorine-containing carbenoid of the highly electrophilic azirinium ion 3, which is formed during the spontaneous removal of the chlorine atom from the intermediate α-chloro-α-CF3 aziridine 2 [58]. Fluoriodomethane is a precursor of the second carbenoid–LiCH2F, which makes it possible to introduce a fluoromethyl fragment into an aziridine ring to form a number of geminal (fluoromethyl)trifluoromethyl aziridines 4. The reaction involves the introduction of two halomethylene groups at the sp2-carbon atom of the starting imine through sequential treatment with the corresponding iodomethyl halides. The order of carbene precursor usage is important: LiCH2Cl is used first as a nucleophile, and LiCH2F is used as a second reagent. This order is necessary due to the low nucleophilicity of LiCH2F, which cannot initiate the functionalization [58].
A similar reaction occurs when N-tosyl-substituted diphenyl ketamine 5 reacts with ICH2F in the presence of LiN(iPr)Cy. The carbenoid and imine 5 yield the hard-to-obtain α-fluoroaziridine 6 in high yield [59] (Scheme 2):

2.2. Monofluoromethylation of Five-Membered N-heterocycles

N-Benzylmaleimide 7 undergoes hydrofluoromethylation with ICH2F in the presence of (TMS)3SiH upon blue LED activation. The product is formed with a yield of 88% [60] (Scheme 3).
The process of photolytic cleavage of the carbon–iodine bond in the ICH2F molecule requires blue LED activation. The fluoromethyl radical combines with the substrate 7 to form an electrophilic carbon-centered radical, which then reacts with tris(trimethylsilyl)silane ((TMS)3SiH) to form the hydrofluoromethylated product 8. The resulting silyl radical (TMS)3Si· initiates a chain of radical transformations following the elimination of the iodine radical from fluoriodomethane with the formation of ·CH2F and (TMS)3Sil· radicals. Based on the obtained product, 3-fluoromethylated N-benzylpyrrolidine 9 was synthesized (64% yield) [60] (Scheme 4).
The three-component reaction of 2-phenylacetaldehyde 10, pyrrolidines 11 and fluoriodomethane under radical activation conditions proceeds through fluoromethylation of the intermediate imine 12 and opens access to monofluorinated simple heterocycles. Product 13 is difficult to synthesize using other methods (Scheme 5) [27]:
The reaction of spiro-epoxyoxindoles 14 and TBAF (tetra-n-butylammonium fluoride) in DMF leads to the nucleophilic ring-opening of the oxirane ring, resulting in the formation of 3-fluoromethylated indolines 15 in good yields [61] (Scheme 6):
The method is simple and does not require metal-based catalysts. The approach also makes it possible to reverse regioselectivity in nucleophilic fluorination by changing the nucleophilic fluoride reagents. TBAF allows fluorination in the CH2 group. At the same time, Py·(HF)x in CH2Cl2 opens the oxirane ring at the spiro-carbon atom to form 3-fluoro-3-hydroxymethyloxindole. DMF or CH2Cl2 in the absence of HF (acidic H-donor), the opening of the epoxide ring proceeds through the SN2 mechanism, which also suggests that both the choice of nucleophilic fluorinating reagents and the choice of the reaction medium play an equally important role in the direction of the regioselectivity of the reaction [61].
Fluoromethylation occurs in the presence of Ir-based photoredox catalysts (fac-[Ir(ppy)3] (ppy: 2-pyridylphenyl)), resulting in the formation of CH2F radicals. Fluoromethylsulfonyl chloride, as the source of the CH2F group, requires additional heating since the generation of CH2F radicals is a slower process, which is not observed in the case of CF3SO2Cl. N-Methyl-N-phenylmethacrylamide acts as the substrate that gives the target fluoromethylated 2-oxindoline [62,63] (Scheme 7).
The formation of the 2-oxindoline involves radical cyclization followed by the oxidation of the intermediate [62,63] (Scheme 8).
Fluoriodomethane is a commercially available, convenient-to-use (b.p. 53.4 °C) and effective reagent for the fluoromethylation of heterocyclic nucleophiles in the presence of bases. Fluoriodomethane allows for the N-fluoromethoxymethylation of a wide range of aromatic heterocycles in the presence of KOH. The reaction proceeds well with indoles, carbazoles, 1H-indazoles and pyrazoles with yields of 46–81% [64] (Scheme 9).
The process occurs with an excess of ICH2F (6 equiv.) and KOH (11 equiv.), MeCN and water in a volumetric ratio of 1:1. According to 19F NMR monitoring of the reaction, a control experiment and literature data, the reaction proceeds through fluoromethylation of the substrate to form an FCH2N intermediate, which is further hydrolyzed to form an N-hydroxymethylated derivative, which, in the last step, is electrophilically attacked by a second equivalent of ICH2F to form the final product 18 (Scheme 10).
A control experiment, consisting of the fluoromethylation of the previously obtained NCH2OH derivative, indirectly confirms this mechanism. Pyrrole, imidazole and benzotriazole do not react with ICH2F under the conditions considered [64].
Varying the bases and reaction medium makes it possible to carry out the fluoromethylation with ICH2F at different nucleophilic centers in the heterocyclic core or side substituents. In the presence of a slight excess of ICH2F (1.2 equiv) and cesium carbonate (1.2 equiv) in acetonitrile, the reaction proceeds quantitatively for 6 h for a wide range of N-heterocycles, including pharmaceutically important ones [65] (Scheme 11).
The method was successfully applied to the N-fluoromethylation of Theophylline. Cimetidine was also fluoromethylated in a similar manner without the guanidine moiety being reacted. Phenytoin reacts with both monofluoromethylation (excess of ICH2F 1.2 eq) and bisfluoromethylation of the hydantoin fragment (excess of 2.4 eq of ICH2F). Imidazole, indazole and phthalimide also react excellently, giving the products in a quantitative yield. Analytically pure heterocyclic derivatives were extracted from the reaction mixture with Et2O without silica gel chromatography [65]. N-Fluoromethylphthalimide was also obtained in the reaction of potassium phthalimide with fluoriodomethane in a MeCN medium. The yield is achieved at 71% by performing the reaction at 120 °C and increasing the pressure to 3.3 bar [66].
N-Heteroarenes can undergo N-fluoromethylation using electrophilic monofluoromethylating reagents—monofluoromethyl(aryl)sulfonium bis(carbomethoxy)methylide 20 under mild conditions [67] (Scheme 12).
Mechanistic studies with D-labeled reagents suggest that the reactions proceed through an electrophilic substitution pathway [67].
Monofluoromethyl(phenyl)sulfonium bis(carbomethoxy)methylide 20 was synthesized from chloromethylphenyl thioether and CsF in PEG-200/MeCN. The fluoromethylphenylthioether is further treated with dimethyldiazomalonate in the presence of [Rh2(esp)2] (esp = a,a,a′,a′-tetramethyl-1,3-benzenedipropionic acid) in dichloromethane [67] (Scheme 13).
Monofluoromethyl(aryl)sulfonium bis(carbomethoxy)methylide 20 is a solid substance that can be stored at room temperature for more than a month, which is very convenient to use, unlike gaseous reagents [67]. The synthesis of a number of similar monofluoromethylsulfonium ylides, derived from 5-diazo-2,2-dimethyl- 1,3-dioxane-4,6-dione, 2-diazo-1H-indene-1,3(2H)-dione and 3-diazo-1,1,1,5,5,5-hexafluoropentane-2,4-dione and used for the fluoromethylation of the same substrates that are presented in the Scheme 12 and some N-heterocyclic 1,3-dicarbonyl compounds, is described in the works [68,69].
2-Methyl imidazole also reacts with fluoriodomethane to form 1-fluoromethyl-2-methyl imidazole in MeCN in the presence of K2CO3 at room temperature. The reaction mixture was stirred overnight, and corresponding 1-fluoromethyl-2-methyl imidazole 22 was obtained with a yield of 63%. Adding another equivalent of iodofluoromethane leads to the formation of bisfluoromethyl-2-methylimidazolium iodide 23, with a yield of 73% [66] (Scheme 14).
The melting point of bisfluoromethyl-2-methylimidazolium iodide is 252 °C [66].
Fluoriodomethane allows direct O-fluoromethylation of N-substituted 5-hydroxypyrazoles 24 in quantitative yields [65] (Scheme 15).
In the pyrazole series, the substitution proceeds efficiently regardless of the type of substituents R2 and R3 (Scheme 15) [65].
The reaction also occurs at the sulfur atom in 2-thio-substituted benzooxazole and benzothiazole 26 to give product 27 quantitatively [65] (Scheme 16).
2-(Amimo)benzooxazole and 2-(amimo)benzothiazole 28 can give similar Se-containg compounds. Monofluoromethyl selenoethers 29 are formed in the reaction of heterocyclic amines 28 and organoselenocyanates in several stages [70] (Scheme 17).
The hetarylamine and tBuNO2 in the presence of HBF4 yield the intermediate, aryldiazonium tetrafluoroborate, which then proceeds in a Schiemann-type reaction with KSeCN. Dihetaryl diselenide RSeSeR is formed from RSeCN in the presence of KOH, which may also help promote nucleophilic attack of RSe-anion in ICH2F to form RSeCH2F. The resulting cyanate anion can also react with RSe+ to form another molecule of RSeCN [70] (Scheme 18).
Recently, the synthesis of unknown azidofluoromethane 30 was demonstrated for the first time [71]. The reaction of bromofluoromethane and sodium azide proceeds in an N-methyl-2-pyrrolidone (NMP) medium at room temperature with quantitative yield. Azidofluoromethane 30 appears to be an excellent reagent for the synthesis of N-fluoromethyl-substituted 1,2,3-triazoles 32.
4-Substituted 1,2,3-triazoles 32 are formed in the reaction of terminal alkynes 30 and azidofluoromethane 31 in the presence of Cu(I) salt [71] (Scheme 19).
The reaction proceeds regioselectively with various phenylacetylenes or tetradec-1-yne in the presence of CuMeSal to form 4-substituted triazoles 32 [71].
4,5-Disubstituted triazoles are formed through a similar reaction of azidofluoromethane with β-ketoesters or 1,3-diones in the presence of pyrrolidine in good to high yields [71] (Scheme 20).
The formation of N-fluoromethyl-substituted 1,2,3-triazoles has not been described in the literature, with the exception of the synthesis of related 1-fluoromethyl-substituted benzotriazoles, which were obtained through electrophilic substitution reactions between monofluoromethylchloride [72] or sulfoximines [73] and the corresponding benzotriazoles.
5-Fluoromethyl-2-oxazolines 36 were obtained using the fluorocyclization of N-allylcarboxamides 35 in yields of up to 68% under electrochemical oxidation conditions. 4-Methyliodobenzene or 4-tert-butyliodobenzene acted as a mediator, and the source of fluorine was Et3N·5HF [74] (Scheme 21).
The proposed mechanism for the electrosynthesis of 5-fluoromethyl-2-oxazolines 36 includes the stage of anodic oxidation of iodorene, resulting in the formation of (difuoroiodo)arene. Next, the iodine (III) atom undergoes a nucleophilic attack through the double bond of the allyl amide 35 to form the iodonium intermediate 37, followed by intramolecular ring-opening via a carbonyl oxygen atom to form 5-(λ3-iodanyl)methyloxazoline 38. The last stage is SN2 substitution with a fluoride anion that yields the target product [74] (Scheme 22).
A similar synthesis was carried out in a flow reactor in the presence of Et3N·7HF and CH2Cl2 (1:1) and 4-iodotoluene as an oxidation mediator. The yields of the target 5-fluoromethyl-2-oxazolines 36 reach 77%. The method is suitable for preparing gram-scale quantities (the productivity of the process is 100–312 mg/h) [75].
2-Nitroacrylates 39 and monofluoromethyl sulfides 40 are excellent starting compounds for the synthesis of C5-monofluorinated isoxazoline N-oxides 41. The reaction was shown for the first time in the work [76]. The reaction does not require special conditions and expensive components: tetrahydrofuran is an excellent reaction solvent, and sodium hydride gives the best yield of sulfur fluoromethylide 39 in situ. The corresponding isoxazoline-N-oxides were prepared in moderate to very good yields, and the compounds were stable even when in contact with silica gel during isolation (Scheme 23):
The resulting isoxazoline-N-oxides 41 can undergo [3 + 2]-dipolar cycloaddition with alkenes as a 1,3-dipole. The reaction proceeds well with terminal alkenes activated by electron-withdrawing groups, for example, dipolarophiles such as phenylacrylate 42 [76] (Scheme 24).
Earlier, N-monofluoromethylation of azoles with ClCH2F was shown under similar conditions [72].

2.3. Monofluoromethylation of Six-Membered N-heterocycles

Saturated N-containing heterocycles 44 can undergo monofluoromethylation with 2-phenylacetaldehyde 10 and fluoroiodomethane under blue LED radical initiation conditions in the presence of (TMS)3SiH. The method makes it possible to synthesize tertiary α-fluoromethyl heterocyclic derivatives 46 that are difficult to obtain otherwise (Scheme 25) [27].
The reaction involves the formation of the iminium cation 45 in situ, which is an acceptor of the CH2F radical, followed by a reaction with (TMS)3SiH for the HAT process, giving the target product. To assist the formation of the active iminium species, tBudimethylsilyltrifluoromethanesulfonate (TBS-OTf) was used as a convenient Lewis acid additive [27].
Piperidin-4-one 47 undergoes direct nucleophilic fluoromethylation with lithium fluorocarbenoid (LiCH2F) obtained from fluoriodomethane [77] (Scheme 26). The corresponding fluoroaminoalcohol 48 was obtained in quantitative yield. The reaction proceeds similarly to that shown in Scheme 1.
Fluoriodomethane or fluorobromomethane are precursors in the synthesis of (fluoromethyl)triphenylphosphonium iodide 49 through the reaction of stoichiometric amounts of Ph3P and ICH2F or BrCH2F as a source of CH2F [78] (Scheme 27).
Fluoromethylene phosphonium ylide 49 is used in the direct C2-fluoromethylation of a wide range of pyridine-N-oxides [78] (Scheme 28).
The reaction proceeds in DMSO with a 1.5-fold excess of (fluoromethyl)triphenylphosphonium iodide 49 and a two-fold excess of tBuOLi at 40 °C for 2 h. Pyridine N-oxides 50 containing electron-donating or electron-withdrawing groups in different positions of the pyridine ring were used as substrates. Fluoromethylation of N-oxides of 2,2′-bipyridine, quinoline and phenanthridine were also studied (yields 20 to 79%). However, 2,6-disubstituted pyridine N-oxides and 2-substituted quinoline N-oxides do not react under the considered conditions [78]. The proposed mechanism involves the reaction of (fluoromethyl)triphenylphosphonium iodide 49 with tBuOLi to produce fluoromethylene phosphonium ylide. Next, the annulation reaction of heteroaryl-N-oxides and the intermediate ylide 52 occurs, followed by aromatization to form fluoromethylated products [78] (Scheme 29).
In the presence of cesium carbonate, similar to the N-fluoromethylation of imidazoles and pyrazoles [65], the reaction of 4(1H)-cinnolinone 53 and ICH2F proceeds excellently (yield 94%) [65] (Scheme 30).
Fluoriodomethane, the industrial raw material, is the source of the CH2F group, which shows excellent tolerance to different functional groups. In the presence of the Pd/norbornene C-H catalytic system, aryl fluoromethylation proceeds well [79] (Scheme 31).
The aryl iodide undergoes a reaction with Pd(0), insertion of a norbornene molecule (NBE), followed by ortho-CH activation to form norbornyl palladacycles, which react with ICH2F and a nucleophile to form the final fluoromethylated product. Optimized conditions assume the presence of DCE (0.2 M), Pd(OAc)2 (10 mol%), tris(2-furyl)phosphine (P(2-furyl)3, 22 mol%) as the ligand, NBE (3.0 equiv.) as the catalytic mediator, and Cs2CO3 (3.0 equiv.). The reaction occurs most efficiently at 80 °C for 12 h. The reaction could be complicated due to direct cross-coupling between arylboronates and ICH2F; however, pinacol arylboronic esters can act as coupling partners in this case. In the synthesis of unsymmetrical orthofluoromethylated biaryls, yields are 45–86%. Ortho-substituted aryl boronic esters can perform a similar function. In this case, yields are 45–76%, respectively. N-Heterocyclicboronic pinacol esters were used to prepare furan and pyridine derivatives [79].
Pyridine and quinoline also undergo direct monofluoromethylation with BrCH2F in the presence of NiI2 and dtbpy (4,4-Di-tert-butyl-2,2-dipyridine) and DMAP (4-dimethylaminopyridine) as ligands through reductive cross-coupling in the presence of metallic Mn [80] (Scheme 32).
This strategy provides an effective method for the synthesis of monofluoromethylated molecules for drug discovery [80].
The synthesis of 6-fluoromethylphenanthridine was carried out through the reaction of monofluoromethyl 2-benzo[d]thiazolyl sulfone and 2-isocyano-3,5-dimethyl-1,1′-biphenyl. The reaction proceeds as radical fluoroalkylation of isocyanides through homolytic cleavage of the C-S bond in the presence of a photo-red/ox catalyst under blue LED. Monofluoromethylsulfone is the source of the fluoroalkyl radical. The generation of a monofluoromethyl radical from monofluoromethyl-2-benzo[d]thiazolyl sulfone is difficult under the given conditions compared to trifluoromethyl or difluoromethyl analogs due to the smaller electron-withdrawing effect of the monofluoromethyl group. However, the introduction of the NO2 group into the 2-position of benzo-[d]thiazolyl fragment significantly increases the monofluoromethylation reaction activity (Scheme 33) [81].
The proposed mechanism involves a photo-red\ox cycle of the catalyst, resulting in a one-electron transfer at the monofluoromethylsulfone with the formation of a sulfinate ion and a monofluoromethyl radical that combines with the isocyanide 59 to form an imidoyl radical 62. The latter undergoes intramolecular radical cyclization to form intermediate product 63, which gives the final product 61 in the presence of Na2CO3 [81] (Scheme 34).
Stable α-monofluorocarboxylic acids 64 allow the direct C–H-monofluoroalkylation of pyridines, pyrazines and quinoxalines 65 to form compounds 66 [82] (Scheme 35).
N-Heteroarenes show high efficiency in the fluoroalkylation reaction, providing access to functionalized fluoroalkyl-substituted structures for the synthesis of drugs. The reaction is catalyzed using silver salts and probably proceeds through a radical mechanism [82].
The formation of bis-monofluoroalkylated pyridine, pyrazine and quinoxaline 68 occurs more efficiently when replacing MeCN with DCE and using five equivalents of α-monofluorocarboxylic acid 65 [82] (Scheme 36).
The synthesis of Te-adenosyl-L-(fluoromethyl)homotellurocysteine (FMeTeSAM) 68, a novel biologically active enzymatic fluoromethylating agent, was recently described. FMeTeSAM is structurally and chemically related to the versatile cellular agent S-adenosyl-L-methionine (SAM) and allows for the thermally mediated transfer of fluoromethyl groups to nitrogen, sulfur and certain C-nucleophiles. FMeTeSAM is used for the synthesis of fluorine derivatives of guanine 70 from 69, natural compounds with anticancer properties [83] (Scheme 37):
FMeTeSAM is a promising reagent in the field of biocatalytic reactions and the synthesis of natural compounds and their analogs, exhibiting high chemoselectivity and regioselectivity [83].
The synthesis of FMeTeSAM 68 includes six sequential steps starting from L-homoserine. The two final stages are shown in Scheme 38. Ditelluride 71 is reduced with NaBH4 and fluoromethylated using ClCH2F by bubbling gas through the reaction mass. The last stage is a process in the presence of ATP and MAT. Methionine adenosyl transferase (MAT) catalyzes the synthesis of S-adenosylmethionine, giving the desired product 68 [83]:
Fluorinated S-adenosylmethionine could potentially provide a similar reagent for enzyme-catalyzed fluoromethylation of N-heterocycles [84].
Quinoline-3-amine 73 yields the corresponding monofluoromethyl selenoester 74 in the reaction of selenocyanate with ICH2F. The synthesis is a one-pot, multi-step procedure. The method is general for a wide range of amino group-containing substrates (Scheme 39) [70]:
The reaction is the first example of the synthesis of RSeCH2F compounds. The proposed mechanism for a similar reaction is similar to the one presented in Scheme 18.
The data concerning N- and C-fluoromethylation of nitrogen-containing heterocycles are summarized in Table 2.

3. Conclusions

Selective monofluoromethylation is one of the least studied methods in fluoroalkylation compared to trifluoro- and difluoromethylation. This review shows the existence of many methods for implementing this reaction with the formation of biologically significant fluorinated N-heterocycles. The reactions proceed regioselectively and in high yields. Bis(fluoromethylation) with a threefold excess of the fluorinating agent has been shown for pyridines, pyrazines and quinoxalines. In modern organofluorine chemistry, fluoriodomethane is the main, effective and universal agent for the introduction of the CH2F group into a wide variety of heterocyclic cores. Fluoriodomethane is tolerant to most functional groups, making it a convenient reagent. Its physical characteristics, availability and the possibility of carrying out electrophilic, nucleophilic and radical methodologies make it a very important and promising reagent for the introduction of the CH2F group. However, other fluoromethylating agents (BrCH2F, ClCH2F, TBAF and FCH2SO2Cl, monofluoromethyl(aryl)sulfoniummethylides, monofluoromethyl sulfides, (fluoromethyl)triphenylphosphonium iodide, 2-fluoroacetic acid) do not lose their relevance. Azidofluoromethane, recently obtained, is an excellent building block for the synthesis of monofluorinated 1,2,3-triazoles.
Modern monofluoromethylation methods almost eliminate the need to use ozone-depleting substances. The development of the synthesis of promising fluoroalkylation reagents in the field of biocatalytic reactions and the synthesis of natural compounds and their analogs is of great importance.

Funding

This research received no external funding.

Institutional Review Board Statement

Not applicable.

Informed Consent Statement

Not applicable

Data Availability Statement

Not applicable

Acknowledgments

The author thanks the Baikal Center for Collective Use, SB RAS.

Conflicts of Interest

The author declares no conflict of interest.

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Scheme 1. The synthesis of α-fluoromethyl-α-trifluoromethylaziridines 4 via the reaction of trifluoroactimidoyl chloride (TFAIC) 1 and lithium monohalocarbenoids.
Scheme 1. The synthesis of α-fluoromethyl-α-trifluoromethylaziridines 4 via the reaction of trifluoroactimidoyl chloride (TFAIC) 1 and lithium monohalocarbenoids.
Ijms 24 17593 sch001
Scheme 2. Synthesis of α-fluoroaziridine from N-tosyl-substituted diphenyl ketimine and ICH2F.
Scheme 2. Synthesis of α-fluoroaziridine from N-tosyl-substituted diphenyl ketimine and ICH2F.
Ijms 24 17593 sch002
Scheme 3. Hydrofluoromethylation of N-Benzylmaleimide using ICH2F and (TMS)3SiH.
Scheme 3. Hydrofluoromethylation of N-Benzylmaleimide using ICH2F and (TMS)3SiH.
Ijms 24 17593 sch003
Scheme 4. Formation of 3-fluoromethylated N-benzylpyrrolidine.
Scheme 4. Formation of 3-fluoromethylated N-benzylpyrrolidine.
Ijms 24 17593 sch004
Scheme 5. Hydrofluoromethylation of pyrrolidines in the presence of 2-phenylacetaldehyde.
Scheme 5. Hydrofluoromethylation of pyrrolidines in the presence of 2-phenylacetaldehyde.
Ijms 24 17593 sch005
Scheme 6. Synthesis of 3-fluoromethylated indolines with nucleophilic ring-opening of oxirane ring in spiro-epoxyoxindoles.
Scheme 6. Synthesis of 3-fluoromethylated indolines with nucleophilic ring-opening of oxirane ring in spiro-epoxyoxindoles.
Ijms 24 17593 sch006
Scheme 7. N-Methyl-N-phenylmethacrylamide cyclization using CH2FSO2Cl.
Scheme 7. N-Methyl-N-phenylmethacrylamide cyclization using CH2FSO2Cl.
Ijms 24 17593 sch007
Scheme 8. The proposed mechanism for N-Methyl-N-phenylmethacrylamide cyclization in the presence of CH2FSO2Cl.
Scheme 8. The proposed mechanism for N-Methyl-N-phenylmethacrylamide cyclization in the presence of CH2FSO2Cl.
Ijms 24 17593 sch008
Scheme 9. N-Fluoromethoxymethylation of aromatic heterocycles using ICH2F in the presence of KOH.
Scheme 9. N-Fluoromethoxymethylation of aromatic heterocycles using ICH2F in the presence of KOH.
Ijms 24 17593 sch009
Scheme 10. The proposed mechanism of N-fluoromethoxymethylation of aromatic heterocycles using ICH2F in the presence of KOH.
Scheme 10. The proposed mechanism of N-fluoromethoxymethylation of aromatic heterocycles using ICH2F in the presence of KOH.
Ijms 24 17593 sch010
Scheme 11. N-Fluoromethylation of N-heterocycles using ICH2F in the presence of Cs2CO3.
Scheme 11. N-Fluoromethylation of N-heterocycles using ICH2F in the presence of Cs2CO3.
Ijms 24 17593 sch011
Scheme 12. Electrophilic N-Fluoromethylation of heteroarenes using monofluoromethyl(aryl)sulfonium bis(carbomethoxy)methylide.
Scheme 12. Electrophilic N-Fluoromethylation of heteroarenes using monofluoromethyl(aryl)sulfonium bis(carbomethoxy)methylide.
Ijms 24 17593 sch012
Scheme 13. Synthesis of monofluoromethyl(aryl)sulfonium bis(carbomethoxy)methylide.
Scheme 13. Synthesis of monofluoromethyl(aryl)sulfonium bis(carbomethoxy)methylide.
Ijms 24 17593 sch013
Scheme 14. Bisfluoromethylation of 2-methylimidazolole.
Scheme 14. Bisfluoromethylation of 2-methylimidazolole.
Ijms 24 17593 sch014
Scheme 15. O-Fluoromethylation of N-substituted 5-hydroxypyrazoles 24 using ICH2F in the presence of Cs2CO3.
Scheme 15. O-Fluoromethylation of N-substituted 5-hydroxypyrazoles 24 using ICH2F in the presence of Cs2CO3.
Ijms 24 17593 sch015
Scheme 16. S-Fluoromethylation of 2-thio-benzo[d]oxazole and 2-thio-benzo[d]thiazole using ICH2F in the presence of Cs2CO3.
Scheme 16. S-Fluoromethylation of 2-thio-benzo[d]oxazole and 2-thio-benzo[d]thiazole using ICH2F in the presence of Cs2CO3.
Ijms 24 17593 sch016
Scheme 17. Synthesis of monofluoromethyl selenoethers using 2-(amimo)benzooxazole and 2-(amimo)benzothiazole.
Scheme 17. Synthesis of monofluoromethyl selenoethers using 2-(amimo)benzooxazole and 2-(amimo)benzothiazole.
Ijms 24 17593 sch017
Scheme 18. The proposed mechanism for the selenomonofluoromethylation of 2-(amimo)benzooxazole and 2-(amimo)benzothiazole.
Scheme 18. The proposed mechanism for the selenomonofluoromethylation of 2-(amimo)benzooxazole and 2-(amimo)benzothiazole.
Ijms 24 17593 sch018
Scheme 19. Synthesis of azidofluoromethane and 4-substituted 1,2,3-triazoles.
Scheme 19. Synthesis of azidofluoromethane and 4-substituted 1,2,3-triazoles.
Ijms 24 17593 sch019
Scheme 20. 4,5-Disubstituted triazole formation through the reaction of azidofluoromethane using β-ketoesters or 1,3-diones.
Scheme 20. 4,5-Disubstituted triazole formation through the reaction of azidofluoromethane using β-ketoesters or 1,3-diones.
Ijms 24 17593 sch020
Scheme 21. Electrochemical synthesis of 5-fluoromethyl-2-oxazolines.
Scheme 21. Electrochemical synthesis of 5-fluoromethyl-2-oxazolines.
Ijms 24 17593 sch021
Scheme 22. The proposed mechanism for the electrochemical synthesis of 5-fluoromethyl-2-oxazolines.
Scheme 22. The proposed mechanism for the electrochemical synthesis of 5-fluoromethyl-2-oxazolines.
Ijms 24 17593 sch022
Scheme 23. Synthesis of C5-monofluorinated isoxazoline N-oxides.
Scheme 23. Synthesis of C5-monofluorinated isoxazoline N-oxides.
Ijms 24 17593 sch023
Scheme 24. [3 + 2]-Dipolar cycloaddition of isoxazoline-N-oxides with phenylacrylate.
Scheme 24. [3 + 2]-Dipolar cycloaddition of isoxazoline-N-oxides with phenylacrylate.
Ijms 24 17593 sch024
Scheme 25. N-Monofluoromethylation of saturated N-containing heterocycles using aldehydes and fluoroiodomethane.
Scheme 25. N-Monofluoromethylation of saturated N-containing heterocycles using aldehydes and fluoroiodomethane.
Ijms 24 17593 sch025
Scheme 26. 4-Monofluoromethylation of 1-benzylpiperidin-4-one with lithium fluorocarbenoid.
Scheme 26. 4-Monofluoromethylation of 1-benzylpiperidin-4-one with lithium fluorocarbenoid.
Ijms 24 17593 sch026
Scheme 27. The synthesis of (fluoromethyl)triphenylphosphonium iodide.
Scheme 27. The synthesis of (fluoromethyl)triphenylphosphonium iodide.
Ijms 24 17593 sch027
Scheme 28. 2-Fluoromethylation of pyridine-N-oxides.
Scheme 28. 2-Fluoromethylation of pyridine-N-oxides.
Ijms 24 17593 sch028
Scheme 29. The proposed mechanism for the 2-fluoromethylation of pyridine-N-oxides.
Scheme 29. The proposed mechanism for the 2-fluoromethylation of pyridine-N-oxides.
Ijms 24 17593 sch029
Scheme 30. N-Fluoromethylation of 4(1H)-cinnolinone with ICH2F in the presence of Cs2CO3.
Scheme 30. N-Fluoromethylation of 4(1H)-cinnolinone with ICH2F in the presence of Cs2CO3.
Ijms 24 17593 sch030
Scheme 31. Synthesis of ortho-fluoromethylated pyridines in the presence of arylboronates.
Scheme 31. Synthesis of ortho-fluoromethylated pyridines in the presence of arylboronates.
Ijms 24 17593 sch031
Scheme 32. NiI2-Catalyzed CH–monofluoroalkylation of pyridine and quinoline.
Scheme 32. NiI2-Catalyzed CH–monofluoroalkylation of pyridine and quinoline.
Ijms 24 17593 sch032
Scheme 33. The synthesis of 6-fluoromethylphenanthridine through the reaction of 2-((fluoromethyl)sulfonyl)-6-nitrobenzothiazole with 2-isocyano(1,1′-diphenyl).
Scheme 33. The synthesis of 6-fluoromethylphenanthridine through the reaction of 2-((fluoromethyl)sulfonyl)-6-nitrobenzothiazole with 2-isocyano(1,1′-diphenyl).
Ijms 24 17593 sch033
Scheme 34. Proposed mechanism of the assembling of 6-fluoromethylphenanthridine.
Scheme 34. Proposed mechanism of the assembling of 6-fluoromethylphenanthridine.
Ijms 24 17593 sch034
Scheme 35. C–H–monofluoromethylation of pyridines, pyrazines and quinoxaline.
Scheme 35. C–H–monofluoromethylation of pyridines, pyrazines and quinoxaline.
Ijms 24 17593 sch035
Scheme 36. C–H–bis(monofluoro)methylation of pyridines, pyrazines and quinoxalines.
Scheme 36. C–H–bis(monofluoro)methylation of pyridines, pyrazines and quinoxalines.
Ijms 24 17593 sch036
Scheme 37. Fluoromethylation of tRNA guanine N37 using FMeTeSAM.
Scheme 37. Fluoromethylation of tRNA guanine N37 using FMeTeSAM.
Ijms 24 17593 sch037
Scheme 38. Synthesis of FMeTeSAM.
Scheme 38. Synthesis of FMeTeSAM.
Ijms 24 17593 sch038
Scheme 39. Synthesis of monofluoromethyl selenoesters from quinoline-3-amine.
Scheme 39. Synthesis of monofluoromethyl selenoesters from quinoline-3-amine.
Ijms 24 17593 sch039
Table 1. Approved or investigational drugs containing of the CH2F group.
Table 1. Approved or investigational drugs containing of the CH2F group.
Structure Therapeutic Use Approval Status
Carmegliptin
Ijms 24 17593 i001
Inhibitor of dipeptidyl peptidase 4 (DPP-4), with hypoglycemic activity for monotherapy or in combination with other oral antihyperglycemic agents for the treatment of Type 2 diabetesInvestigational drug;
second phase of clinical trials
[43,44];
Fluticasone furoate
Ijms 24 17593 i002
Corticosteroid with potent anti-inflammatory,
anti-allergic action
2007
Sevoflurane
Ijms 24 17593 i003
General anesthetic1995
Sirpefenicol
Ijms 24 17593 i004
Antibacterial agentInvestigational veterinary drug;
Norcholestenol fluoromethyl
Ijms 24 17593 i005
Fluorinated analog of the
scintiscanning/SPECT agent
for PET imaging
Investigational PET imaging
agent [45];
Imlunestant
Ijms 24 17593 i006
Orally active ER-α degrader, antiestrogen and antineoplastic agent for the treatment of ER-positive (ER+) breast cancers;Investigational drug [46,47,48,49,50];
third phase of clinical trials;
Fipravirimat
Ijms 24 17593 i007
Anti-HIV/AIDS; maturation inhibitors;Investigational drug [51];
18F-FMISO or fluoromisonidazoleIjms 24 17593 i008
Radiopharmaceutical for PET imaging of hypoxiaInvestigational drug [52,53];
Mefway
Ijms 24 17593 i009
Serotonin 5-HT1A receptor antagonist; PET radiotracerInvestigational drug [54,55];
Florfenicol
Ijms 24 17593 i010
Antibiotic1996
Cefluprenam
Ijms 24 17593 i011
Anti-bacterial agent of broad spectrum;
fourth generation cephalosporin;
Highly effective against bacterial pneumonia;
1997
Afloqualone
Ijms 24 17593 i012
Sedative and muscle-relaxantInvestigational drug [56];
Fluorocholine
Ijms 24 17593 i013
Oncologic PET tracerInvestigational drug [57];
Table 2. N- and C-fluoromethylation of three-, five- and six-membered N-heterocycles.
Table 2. N- and C-fluoromethylation of three-, five- and six-membered N-heterocycles.
Scheme №ProductSubstrateCH2F-Source,
Conditions
Ref.
Three-Membered N-heterocycles
1α-Fluoromethyl-α-CF3 aziridineTrifluoroacetimidoyl chloride (TFAIC)ICH2F;
MeLi-LiBr
THF, −78 °C, 1 h
[58]
2α-FluoroaziridineN-tosyl-diphenyl ketimineICH2F;
LiN(iPr)Cy,
[59]
Five-Membered N-heterocycles
33-Fluoromethylated N-benzylpyrrolidinesN-BenzylmaleimideICH2F;
(Me3Si)3SiH, blue LED
[60]
41-(1-Fluoro-4-phenylbutan-2-yl)pyrrolidinePyrrolidineICH2F;
2-phenylacetaldehyde, (Me3Si)3SiH, blue LED
[27]
63-Fluoromethylated indolinesSpiro-epoxyoxindolinesTBAF[61]
73-(2-Fluoroethyl)indolin-2-onesN-Methyl-N-phenylmethacrylamidesFCH2SO2Cl;
K2HPO4
fac-Ir(ppy)3 (1 mol%)
[62,63]
9N-Fluoromethoxymethylated indoles, carbazoles, 1H-indazoles and pyrazolesIndoles, carbazoles, 1H-indazoles and pyrazolesICH2F;
KOH
MeCN/H2O
40 °C, 6 h
[64]
11N-fluoromethylated Theophylline, Cimetidine, Phenytoin (hydantoin), imidazole, indazoles, phthalimideTheophylline, Cimetidine, Phenytoin (hydantoin), Imidazole, Indazole, phthalimideICH2F, Cs2CO3.
Theophylline, Cimetidine, Phenytoin (hydantoin), Imidazole, Indazole, phthalimide
[65]
12N-Fluoromethylated pyrazole, indazole, benzoimidazole, benzotriazole, 7H-pyrrolo[2,3-d]pyrimidine1H-pyrazole, 1H-indazole, benzoimidazole, benzotriazole, 7H-pyrrolo[2,3-d]pyrimidineMonofluoromethyl(aryl)sulfonium bis(carbomethoxy)methylide;
Cs2CO3, DMF; 40 °C, 12 h
[67,68,69]
141-Fluoromethyl-2-methyl imidazole; bis(fluoromethyl)-2-methylimidazolium iodide2-Methyl imidazoleICH2F;
K2CO3, MeCN, rt
[66]
15O-fluoromethylated N-substituted 5-hydroxypyrazolesN-substituted 5-hydroxypyrazolesICH2F, Cs2CO3, MeCN
6 h, rt
[65]
162-((Fluoromethyl)thio)benzo[d]thiazole,
2-((Fluoromethyl)thio)benzo[d]thiazole
2-thio-benzooxazole and 2-thio-benzothiazoleICH2F, Cs2CO3, MeCN
6 h, rt
[65]
172-((fluoromethyl)selanyl)benzooxazole, 2-((fluoromethyl)selanyl) benzothiazole2-(Amimo)benzooxazole, 2-(Amimo)benzothiazoleICH2F;
KSeCN, KOH
[70]
194-Substituted N-fluoromethyl-1,2,3-triazolesTerminal alkynesAzidofluoromethane;
NMP, Cu (I) 3-methylsalicylate, rt, 1 h
[71]
204,5-Disubstituted N-fluoromethyl-1,2,3-triazoleβ-Ketoesters or 1,3-DionesAzidofluoromethane;
pyrrolidine, 40 °C, 20 h
[71]
215-Fluoromethyl-2-oxazolinesN-AllylcarboxamidesEt3N·5HF;
Electrochemical conditions;
4-Methyliodobenzene, 4-tert-butyliodobenzene; CH2Cl2, rt, 15 h
[74,75]
235-Monofluorinated isoxazoline N-oxides2-NitroacrylatesMonofluoromethyl sulfides;
NaH, 40 °C, 20 h
[76]
Six-Membered N-heterocycles
251-(1-Fluoro-4-phenylbutan-2-yl) pyperidine, piperazines, morpholine, thiomorpholine2-phenylacetaldehyde
Pyperidine, piperazines, morpholine, thiomorpholine
ICH2F;
tBudimethylsilyltrifluoromethanesulfonate (TBS-OTf) (TMS)3SiH; 4 Å MS,
CH2Cl2, r.t., 6 h
Blue LED
[27]
261-Benzyl-4-(fluoromethyl)piperidin-4-olPiperidin-4-oneICH2F;
MeLi-LiBr
THF, −78 °C, 1 h
[77]
28C2-fluoromethylated pyridines, 2,2′-bipyridine, quinoline and phenanthridine-N-oxidesPyridines, 2,2′-bipyridine, quinoline and phenanthridine-N-oxides(fluoromethyl)triphenylphosphonium iodide[78]
301-(Fluoromethyl)cinnolin-4(1H)-one4(1H)-cinnolinoneICH2F, Cs2CO3, MeCN
6 h, rt
[65]
31Ortho-fluoromethylated pyridines3-Iodo-2,5-disabstituted pyridinesICH2F;
Pinacol arylboronic esters (RBpin)
Pd(OAc)2 (10 mol%), Cs2CO3 (3.0 equiv.)
P(2-furyl)3 (22 mol%)
[79]
323-(Fluoromethyl)pyridine;
3-(Fluoromethyl)quinoline
Pyridine, quinolineBrCH2F;
NiI2; dtbpy (4,4-Di-tert-butyl-2,2-dipyridine); DMAP (4-dimethylaminopyridine);
N2, DMAc, 40 °C, 24 h
[80]
336-Fluoromethylphenanthridine2-Isocyano-3,5-dimethyl-1,1′-biphenyl2-((fluoromethyl)sulfonyl)-6-nitrobenzothiazole;
[Ru(bpy)3]Cl2, DMSO, rt,
Na2CO3, N2, Blue LED
[81]
352-Monofluoromethylated pyridines, pyrazines and quinoxalinesPyridines, pyrazines and quinoxalines2-fluoroacetic acid;
AgNO3, K2S2O8,
MeCN/H2O = 2:1
80 °C, 20 h
[82]
362,6-Bis(monofluoromethyl)pyridine; 2,5-Bis(monofluoromethyl) pyrazines;
2,3-Bis(monofluoromethyl)quinoxalines
Pyridines, pyrazines and quinoxalines2-fluoroacetic acid;
AgNO3, K2S2O8,
DCE,
80 °C, 20 h
[82]
393-((Fluoromethyl)selanyl)quinolineQuinoline-3-amineICH2F;
HBF4/tBuCN
CH3CN, 0 °C, 2 h;
CuCl/CuCl2/1,10-phen/
KSeCN
CH3CN, 0 °C, 3 h;
KOH
CH3CN, 0 °C, 7 h
[70]
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Moskalik, M.Y. Monofluoromethylation of N-Heterocyclic Compounds. Int. J. Mol. Sci. 2023, 24, 17593. https://doi.org/10.3390/ijms242417593

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Moskalik MY. Monofluoromethylation of N-Heterocyclic Compounds. International Journal of Molecular Sciences. 2023; 24(24):17593. https://doi.org/10.3390/ijms242417593

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Moskalik, Mikhail Yu. 2023. "Monofluoromethylation of N-Heterocyclic Compounds" International Journal of Molecular Sciences 24, no. 24: 17593. https://doi.org/10.3390/ijms242417593

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