Next Article in Journal
Dense Hydrogen-Bonded Assembly of Hydrogen-Rich Cations and Pentazolate Anions: A Series of Highly Insensitive Ionic Salts
Previous Article in Journal
Zeolitic-Imidazole Framework (ZIF)-Derived ZnO Doped with Ag for Improved Ethanol Sensing Applications
Previous Article in Special Issue
Synthesis of Adenine Nucleosides with a Reactive (β-Iodovinyl)sulfone or (β-Keto)sulfone Group at the C2 Position and Their Polymerase-Catalyzed Incorporation into DNA
 
 
Font Type:
Arial Georgia Verdana
Font Size:
Aa Aa Aa
Line Spacing:
Column Width:
Background:
Article

Synthesis, Stability, and Biological Evaluation of Novel Aminoderivatives Incorporating the Aza-Acridine Scaffold

by
Maria Karelou
1,
Anthi Panara
2,
Eleftheria Chatziorfanou
1,
Aikaterini F. Giannopoulou
3,†,
Dimitrios J. Stravopodis
3,
Evagelos Gikas
2 and
Ioannis K. Kostakis
1,*
1
Department of Pharmacy, Division of Pharmaceutical Chemistry, National and Kapodistrian University of Athens, Panepistimiopolis, Zografou, 15771 Athens, Greece
2
Laboratory of Analytical Chemistry, Department of Chemistry, National and Kapodistrian University of Athens, Panepistimiopolis, Zografou, 15771 Athens, Greece
3
Laboratory of Cellular Oncology, Section of Cell Biology and Biophysics, Department of Biology, School of Science, National and Kapodistrian University of Athens, Panepistimiopolis, Zografou, 15771 Athens, Greece
*
Author to whom correspondence should be addressed.
Current address: Laboratory of Cell Biology of Immunity, Max Delbrück Center for Molecular Medicine (MDC), Robert-Rössle-Str. 10, 13125 Berlin, Germany.
Molecules 2025, 30(12), 2612; https://doi.org/10.3390/molecules30122612 (registering DOI)
Submission received: 15 May 2025 / Revised: 13 June 2025 / Accepted: 13 June 2025 / Published: 16 June 2025
(This article belongs to the Special Issue Exclusive Feature Papers in Synthetic Medicinal Chemistry)

Abstract

:
Several new amino-substituted aza-acridine derivatives bearing one or two basic side chains have been designed and synthesized. Their anticancer activities were evaluated in vitro against two human cancer cell lines: T24 (urothelial bladder carcinoma, malignancy grade III) and WM266-4 (metastatic melanoma). Some of the synthesized compounds induced significant antiproliferative effects, with WM266-4 cells appearing more susceptible than T24 cells. This apparent cell-type selectivity may reflect differences in the mutational profiles and molecular target landscapes between the two cancer models. A stability study under hydrolytic conditions, based on a validated method, indicated that the most active compounds were stable under aqueous conditions. Computational analysis further supported the stability of these analogs, providing insights into the structure–stability relationships of the synthesized compounds.

1. Introduction

Acridine derivatives have been extensively studied as potential anticancer agents due to their unique structural and pharmacological properties [1,2,3,4]. Acridine serves as a versatile scaffold for the synthesis of analogs with a broad spectrum of biological activities, including anticancer [5,6], anti-inflammatory [7], antiviral [8], antimalarial [9,10], and antiparasitic effects [11]. The π-conjugated planar structure enhances hydrophobicity, facilitating interactions with biomolecular targets and DNA intercalation, which inhibits replication in rapidly dividing cancer cells. In addition to DNA intercalation, acridine derivatives inhibit critical enzymes, such as topoisomerases [12,13,14], telomerase [15,16], and cyclin-dependent kinases [17], contributing significantly to their anticancer effects.
Notable examples include pyrazoloacridines [18,19,20,21], thiadiazinoacridines [22], triazoloacridones [22,23,24], and imidazoloacridones. Among them, compounds like pyrazoloacridine (PZA), imidazoloacridine C-1311, acridine carboxamide DACA, and aza-acridines have attracted significant attention due to their promising biological properties. Structure-activity relationship (SAR) studies have highlighted that specific features, such as a 7-methoxy group, an electron-deficient nitro group, and one or two basic side chains, are crucial for both activity and selectivity, as illustrated in Figure 1, where key features are color-coded for clarity. Optimal activity is observed with side chains comprising two or three methylene units, whereas modifications that reduce the hydrogen-bonding ability of the amino group markedly diminish efficacy, emphasizing the importance of these interactions. The incorporation of a carbonyl group between the amino side chain and the chromophore improves the flexibility and spatial arrangement, while the addition of a fused pyrazole group further improves the activity [18,19,20,21,22,23,24].
As part of an extensive research program on the synthesis and pharmacological evaluation of acridine analogs [25,26,27,28], we recently reported the synthesis of several amino-substituted aza-acridines bearing a nitro group at C-4.
Although these compounds exhibit low cytotoxic activity, this limitation is attributed to their hydrolytic instability in aqueous environments. Aza-acridines are amenable to ring-opening reactions, and their stability is strongly influenced by the substitution pattern on the core structure [26]. Preliminary findings suggest that electron-donating groups enhance core stability, potentially mitigating hydrolytic degradation and preserving biological activity (Scheme 1).
Prompted by these findings, we investigated this scaffold further and studied the influence of nitrogen positioning and substituent patterns on scaffold stability. In the new derivatives, nitrogen was relocated to the opposite side of the carbonyl group, while a nitro group or a second basic side chain was incorporated into the A-ring. The rationale for these modifications was based on previous findings of our group, which indicated that the electron density distribution around the carbonyl group plays a crucial role in the hydrolytic stability of the heterocyclic ring [26]. Specifically, the introduction of electron-donating or electron-withdrawing groups in proximity to the carbonyl can significantly affect the susceptibility of the ring to nucleophilic attack and ring opening. Thus, the newly introduced structural changes were designed to modulate the electronic environment of the core and enhance stability while preserving or improving the pharmacological profile observed in related acridines.

2. Results and Discussion

2.1. Chemistry

The synthesis of amino-substituted aza-acridones 1217 started from 1-chloro-4-nitro-11H-pyrido[2,1-b]quinazolin-11-one (8) and 1-chloro-8-methoxy-4-nitro-11H-pyrido[2,1-b]quinazolin-11-one (9) (Scheme 2). To synthesize the nitro-substituted aza-acridone 8, we utilized nitro derivative 5, prepared from commercially available 2,6-dichlorobenzoic acid (4) following a previously described procedure [29]. Compound 5 was then reacted with 2-aminopyridine (1) in the presence of NaOH, yielding intermediate acid 6, which, upon intramolecular cyclization, provided chloro-substituted aza-acridone 8 with an overall yield of 85%. For the preparation of methoxy-substituted analog 9, we employed the same synthetic procedure, starting from 5-methoxypyridin-2-amine (3) with a 91% overall yield. This involved the initial preparation of pyridine 3. Thus, commercially available 2-aminopyridine (1) was first reacted with iodine in the presence of KIO4 to afford the corresponding iodopyridine 2. Subsequent reaction with methanol in the presence of cuprous iodide and 1,10-phenanthroline provided methoxy-substituted pyridine 3. Finally, the reaction of these chloro-substituted acridones with the appropriate N,N-dialkylethylenediamines or N,N-dialkylpropylenediamines resulted in the target amines 1017. The yield of nucleophilic substitution ranged from 50% to 90%, depending on the amine used.
Subsequently, the nitro groups of compounds 1017 were reduced through hydrogenation over palladium on activated carbon to afford anilines 1825, which, upon treatment with chloracetyl chloride or 3-chloropropionyl chloride, afforded amides 2633 and 4249, respectively (Scheme 3). Finally, the reaction of these amides with the appropriate amines yielded target diamines 3441 and 5057. The overall yield for the preparation of the diamino-substituted analogs ranged from 10% to 50%, with the reduction step being the most crucial due to the instability of the intermediate aniline.

2.2. Biology—Pharmacology

In Vitro Cytotoxic Activity—Cell Viability Assay
All newly synthesized compounds were evaluated for their antiproliferative activity against two human cancer cell lines of high clinical relevance: T24 (urinary/urothelial bladder cancer) [30,31,32,33] and MW266-4 (skin cancer: melanoma) [34,35,36,37]. Both T24 and WM266-4 cancer cell types are known for their high malignancy grades and strong metastatic potential. The T24 (malignancy grade III) cell line is characterized by the H-RASG12V (gain of function) and the p53ΔY126 (loss of function) mutant protein forms (https://depmap.org/portal/cell_line/ACH-000018?tab=mutations, accessed on 20 May 2025), while the WM266-4 (metastatic) cell line is typified by the B-RAFV600D (gain of function) driver mutation (https://depmap.org/portal/cell_line/ACH-001239?tab=mutations, accessed on 20 May 2025). All three mutations are oncogenic; thus, the T24 and WM266-4 cell systems are capable of reliably recapitulating bladder cancer and metastatic melanoma malignancies, respectively.
Most of the tested compounds did not significantly affect the cell viability. However, four compounds (11, 15, 35, and 39) exhibited cytotoxic effects with varying potency and selectivity. Compounds 11 and 15 exhibited modest, concentration-dependent activity in both cell lines, whereas compounds 35 and 39 were markedly more potent against WM266-4 cells. Notably, compound 35 nearly abolished WM266-4 viability at 100 μM (Figure 2), suggesting its selective activity against metastatic melanoma.
Based on the IC50 values in WM266-4 cells, compound 35 was the most active (24.74 ± 3.00 μM), followed by 39 (27.31 ± 3.00 μM), 15 (48.94 ± 3.00 μM), and 11 (49.63 ± 3.00 μM) (Figure S1). Interestingly, compound 35 exhibited minimal activity in T24 cells, suggesting selective cytotoxicity against melanoma. This difference may reflect the distinct mutational context of the two cell lines. In T24 cells, the coexistence of H-RASG12V and p53ΔY126, along with other alterations such as CADQ646Ter, V1357F, HLA-DQB1P84E, SRPK2D65A, and WIF1A149E, did not sensitize them to compound 35. In contrast, WM266-4 cells carry additional mutations beyond B-RAFV600D—including APCT2178NfsTer2, CDH255TfsTer23, FGFR2P748RfsTer20, FGFR3P402L, HGFR197C, HLA-DQB1Y62S, LRP6T83NfsTer2, MAP3K15W1112Ter/P730RfsTer33, MMP9G100E, PRKCIT410I, SMAD4P313A, and TP73H96PfsTer33—which may influence their response to cytotoxic agents (https://depmap.org/portal/cell_line/ACH-001239?tab=mutations, accessed on 20 May 2025) [38].
Overall, compound 35—and, to a lesser extent, compound 39— emerged as promising leads for the targeted treatment of metastatic melanoma. The selective activity observed in WM266-4 cells warrants further investigation to elucidate its mechanism of action and therapeutic potential.

2.3. Hydrolysis Study

The subjective hydrolysis procedure was used to experimentally ascertain the stability of the investigated compounds. Hydrolysis was not performed under acidic or alkaline conditions to simulate the cellular and extracellular pH of 7.4, whereas under the same notion, the temperature was set to 23(±1) °C. A UV-Vis methodology was developed and validated to assess the quality of the procedure, including linearity, sensitivity, precision, and robustness. The λmax wavelengths obtained for compound 17 were 220 nm, 342 nm, and 446 nm, while the latter one was selected as the optimum one, whereas for compound 16 were 238 nm, 373 nm, and 462 nm, and the 462 nm was selected as the optimum one (Figures S1 and S2). To ensure high selectivity, the longest wavelengths were employed for quantitative analyses. Thus, 446 and 462 nm were used for the abovementioned compounds, respectively.
The analytical methodology validation results showed excellent linearity (Table S1). The linear range of compound 16 was between 5.0 and 15.00 mg L−1, whereas that of compound 17 was between 5.0 and 12.5 mg L−1. The calibration curve equations obtained, as well as the coefficient of determination for both compounds, are listed in Table S1 in the Supplementary Material. Additionally, the calibration curves passed the normality (Shapiro-Wilk and Kolmogorov-Smirnov) and homoscedasticity tests, proving the validity of the analysis. Furthermore, no outlier data were obtained.
The repeatability of compound 16 was examined at seven levels (5 mg L−1, 6.25 mg L−1, 7.5 mg L−1, 8.75 mg L−1, 10 mg L−1, 12.5 mg L−1, and 15 mg L−1) with five replicate samples for each level. The mean absorbance, standard deviation (SD), and percentage of relative standard deviation (% RSD) were calculated. For all the investigated levels, the % RSD was less than 4.5%, thus demonstrating excellent repeatability. Furthermore, the repeatability of compound 17 was tested at six levels (5 mg L−1, 6.25 mg L−1, 7.5 mg L−1, 8.75 mg L−1, 10 mg L−1, and 12.5 mg L−1) with five replicate samples for each level, and the corresponding values were calculated accordingly. For all levels, the %RSD was less than 0.44%, indicating excellent repeatability. The values obtained for each level for both compounds are tabulated in Table S2 (compound 16) and Table S3 (compound 17) in the Supplementary Material.
The sensitivity, according to the IUPAC definition, was calculated from the calibration equation and was found to be LOD = 0.51 mg L−1 and LOQ= 1.54 mg L−1 for compound 17. The corresponding values for compound 16 were determined to be LOD = 0.7 mg L−1 and LOQ = 2.1 mg L−1. The robustness study determined that deliberately altering the λmax for both compounds by 5 nm did not exceed 1%, expressed as %RSD.
The hydrolytic stability was assessed using linear and non-linear regression of the data obtained from the hydrolysis procedure. The linear model obtained in both cases, showing a near-zero slope for both cases, indicates the stability of both substances under the conditions used. It should be noted that under similar conditions, the previous series of compounds were readily degraded [26].

2.4. Computational Studies

The enhanced biological activity of the new molecular scaffold was partly attributed to its hydrolytic stability. Consequently, a rigorous investigation was undertaken to assess the stability of these two scaffolds (previously named 9-amino-6-nitro-11H-pyrido[2,1-b]quinazolin-11-one and abbreviated as 9A, and the current name 1-amino-4-nitro-11H-pyrido[2,1-b]quinazolin-11-one and abbreviated as 1A) employing a quantum mechanical approach. For simplicity, the alkane groups that imposed conformational freedom on the system were removed, as they obscured the effects of the electronic configuration on the extent of hydrolysis. The main questions posed were (a) whether the C-N amide bond exhibits a significantly higher π character for 1A than for the 9A derivative, (b) whether the carbonyl carbon is more electrophilic, and (c) whether the carbonyl oxygen is more nucleophilic. Criteria (b) and (c) refer to the basic and acidic hydrolysis of amides, respectively. Furthermore, the aromaticity of the system, comprising atoms adjacent to the δ-lactam or the ring to which the lactam belongs, the bond lengths, and the planarity thereof are indicators of π-system delocalization. Multiple metrics of aromaticity have been employed, including bond lengths, their respective bond angles, and the planarity of the system, that is, the ring to which it belongs, the AIM (Atoms-In-Molecules) ring critical points, the ELF (Electron Localization Function) localization, and specialized aromaticity indices such as the HOMA (Harmonic Oscillator Model of Aromaticity), the PDI (Para-Delocalization Index) and the FLU (Aromatic Fluctuation Index) indices as well as the Shannon aromaticity index. Based on the comparison between two molecules of each group (Figure 3), it has been considered that the more delocalized the electronic density of the ring, the more stable the lactamic bond.

Quantum Mechanical-Based Estimation of the Lactam Ring Stability

(a)
Charges
The charge trends of the two molecules were calculated to assess whether the two molecules were equally amenable to acidic or basic hydrolysis. The CHELPG ESP fitting atomic charge calculated using MultiWFN showed that the charge of the carbonyl carbon changed from 0.69 for the 1A derivative to 0.72 for the 9A derivative, indicating a more facile attack of the hydroxyl anion on the latter. Furthermore, the respective charge of the carbonyl O is −0.6 for the 1A molecule and becomes slightly higher, i.e., 0.61 for the 9A molecule, proving that the acidic hydrolysis starting with oxygen protonation is marginally facilitated in the latter derivative.
(b)
Geometry analysis
The deviation of the dihedral angles for the central ring of the molecule, i.e., the lactam-bearing ring, indicates the loss of aromaticity, which in turn denotes the increased hydrolytic instability between the two derivatives.
(c)
Angles and dihedral angles
The dihedral angles are listed in Table 1. The angles encompassing the lactam nitrogen moiety did not deviate appreciably from the theoretical 120° predicted for the nitrogen SP2 hybridization, except for the bond centered on the carbonyl carbon. In the latter case, the two angles are 115.99 for the 1A and 116.74 for 9A, indicating a slightly increased strain of the 1A. The calculation of the dihedral angles of the amide moiety exhibits a larger deviation from planarity for the 9A derivative, which is attributed to the higher sp3 character of the carbonyl carbon and, therefore, a slightly higher partial δ+ charge. Thus, the 9A carbonyl carbon is amenable to a higher hydrolysis rate due to the more facile nucleophilic attack of OH during the first step of alkaline hydrolysis.
(d)
Bond lengths
The bond lengths of the two molecules are listed in Table 2. The major divergences in the bond lengths are in ring C (three bonds) and ring 1 (one bond), which can be attributed to the positioning and resulting electronic density redistribution due to the NO2 group. Interestingly, all the bonds of the lactamic N are contracted to 1A, showing that the aromaticity of the central ring (ring A) is enhanced.
The results of the comparison of the bond lengths, angles, and dihedral angles are shown in Figure 4.
(e)
FUKUI functions
To examine the potential differences in the hydrolytic reactivity between the two molecules, the f− and f+ FUKUI functions were examined. The electrophilic and nucleophilic susceptibilities of the carbonyl carbon and its oxygen counterpart were examined to assess the differences in the basic and acidic hydrolysis of the two substances. The f-value for the carbonyl O atom is calculated to be 0.018 in 1A, whereas the corresponding value is 0.0565 for 9A, indicating that the latter can be protonated more easily. Accordingly, the f+ value of the carbonyl C is found to be 0.0469 for the 1A analog, whereas the corresponding value is calculated to be 0.0628 for its 9A counterpart, showing enhanced nucleophilic susceptibility for the latter molecule upon attack by the OH anion.
  • Aromaticity indices
To study whether the resistance of the 1A analog to hydrolysis is the result of the central ring-enhanced electronic charge delocalization, i.e., enhanced aromaticity, a series of aromatic indices were employed. The results are presented in Table 3.
It is apparent that upon relocation of the NO2 group to ring B, ring A acquires an enhanced aromatic character for derivative 1A. All the aromaticity indices show that the property is enhanced for rings A and C and reduced for ring B. This is probably the result of enhanced electron delocalization to a more extended conjugated π system, which includes the lactamic moiety. In the case of the 9A analog, NO2, due to its electron-drawing properties, relocated the electronic cloud toward it, causing charge separation and drawing the electronic density from the respective bonds. The only index that shows no substantial difference between the two molecules is the Shannon entropy index.
  • Topological analysis of the electron density
Further topological analysis of the carbonyl carbon, the corresponding oxygen, and their connecting bonds was carried out using the ELF and LOL (Localized Orbital Locator) indices. The results are presented in Table S4 and Figure 5, and the CP (Critical Point) numbering is shown in Figure S4.
The ELF shows that there is a negligible difference in the CPs located on the carbonyl oxygen, carbonyl carbon, and lactamic N compared to the CPs of the two bonds, the C=O and the C-N, where the ELF values are enhanced. The only appreciable difference is located at the C=O CP, showing a slight difference, with the 1A molecule bearing slightly more σ character to this bond.
The same trend as that observed for the ELF values holds for the Localized Orbital Locator quantum chemical counterpart. Thus, the LOL is enhanced for the CPs of C=O, showing a slightly more localized electron density. In both cases, these differences could not demonstrate the increased stability of the 1A molecule.

3. Materials and Methods

3.1. General Information

All commercially available reagents and solvents were purchased from Alfa Aesar (Ward Hill, MA, USA) and used without any further purification. Melting points were determined using a Büchi apparatus and were uncorrected. All NMR spectra were recorded on 400 or 600 MHz Bruker spectrometers (Avance™ DRX and III instruments, Bruker BioSpin GmbH, Rheinstetten, Germany). 1H NMR (200, 400, and 600 MHz) and 13C NMR (50 and 151 MHz, recorded with complete proton decoupling) spectra were obtained with samples dissolved in CDCl3 or DMSO-d6, with the residual solvent signals used as internal references: 7.26 ppm for CHCl3 and 2.50 ppm for (CD3)(CD2H)S(O) regarding 1H NMR experiments; 77.2 ppm for CDCl3 and 39.4 ppm for (CD3)2S(O) concerning 13C NMR experiments. Chemical shifts (δ) are given in ppm to the nearest 0.01 (1H) or 0.1 ppm (13C) unit. The coupling constants (J) are expressed in hertz (Hz). The signals are reported as follows: (s = singlet, d = doublet, t = triplet, m = multiplet, and br = broad). The assignments of 1H and 13C NMR signals were unambiguously achieved with the help of D/H exchange and 2D techniques: COSY, NOESY, HMQC, and HMBC experiments. Systematic indole and pyrazole nomenclatures were used for the assignment of each spectrum. Flash chromatography was performed on Merck silica gel (40–63 μm) with the indicated solvent system using gradients of increasing polarity in most cases (Merck KGaA, Darmstadt, Germany). The reactions were monitored by analytical thin-layer chromatography (Merck pre-coated silica gel 60 F254 TLC plates, 0.25-mm layer thickness). The compounds were visualized on TLC plates using UV radiation (254 and 365 nm). All solvents used in the absorption and fluorescence experiments were of spectroscopic grade. Mass spectra were recorded on a UPLC Triple TOF-MS {UPLC: Acquity of Waters, SCIEX Triple TOF-MS 5600+ (Framingham, MA, USA)}.

3.2. Synthesis of Compounds 257

2-Amino-5-iodopyridine (2)
To a suspension of 2-aminopyridine (4 g, 42.55 mmol, 1), ΚΙO4 (1.43 g, 62.17 mmol), and Ι2 (4.48 g, 84.56 mmol) in a mixture of acetic acid (99.6 mL) and water (5 mL) at 0 °C, sulfuric acid 98% (1.16 mL) was added dropwise, and the resulting mixture was stirred at 80 °C for 5 h. After completion of the reaction, the mixture was poured into ice-water and saponified by the addition of 20% ΝaOH solution (pH~10). The resulting precipitate was filtered off, washed with aqueous Νa2S2O3 solution, and dried under vacuum over P2O5 to afford 8 g (67%) of the title compound 2, which was practically pure and used for the next step without further purification. Mp 126–130 °C (EtOAc) [29]. 1HNMR (400 MHz, DMSO-d6) δ (ppm) 8.03 (d, J = 2.1 Hz, 1H, H-6), 7.58 (dd, J = 8.7, 2.2 Hz, 1H, H-4), 6.34 (d, J = 8.7 Hz, 1H, H-3), 6.11 (brs, 2H, D2Oexch., NH2). 13C NMR (151 MHz, DMSO-d6) δ (ppm) 157.4, 153.8, 145.3, 110.9, 77.8.
2-Amino-5-methoxy-pyridine (3)
A mixture of 2-amino-5-iodopyridine (6 g, 27.3 mmol, 2), Cs2CO3 (17.8 g, 54.6 mmol), CuI (520 mg, 2.73 mmol), and 1,10-phenanthroline (0.98 g, 5.46 mmol) in anhydrous MeOH (50 mL) was stirred at 120 °C in an autoclave apparatus for 12 h. The reaction mixture was then filtered, the filter cake was washed with EtOAc, the filtrate was washed with water, dried (anhydrous Na2SO4), and evaporated to dryness. Flash chromatography on silica gel using a mixture of cyclohexane/EtOAc 3:1 as the eluent afforded the title compound (1.5 g, 44%) as a brownish oil [29]. 1HNMR (400 MHz, CDCl3) δ (ppm) 7.78 (d, J = 3.2 Hz, 1H, H-6), 7.09 (dd, J = 8.8, 3.2 Hz, 1H, H-4), 6.48 (d, J = 9.2 Hz, 1H, H-3), 5.43 (brs, 2H, D2O exch., NH2), 3.68 (s, 3H, OCH3). 13C NMR (101 MHz, CDCl3) δ (ppm) 152.9, 149.6, 133.2, 125.7, 109.4, 56.3 (OCH3).
2,6-Dichloro-3-nitrobenzoic acid (5)
To a suspension of 2,6-dichlorobenzoic acid (2.00 g, 10.53 mmol) in c. H2SO4 (30 mL) was added dropwise to fuming HNO3 (0.6 mL, 14.28 mmol) at 0 °C, and the mixture was stirred at room temperature for 45 min. After completion of the reaction, the mixture was poured into ice, and the resulting solid was filtered, washed with cold water, and dried over P2O5 to afford 2.4 g (97%) of the title compound 5, which was used in the next step without any further purification. M.p.: 140–142 °C (H2O) [29]. 1HNMR (400 MHz, CDCl3) δ (ppm) 7.92 (d, J = 8.8 Hz, 1H, H-4), 7.55 (d, J = 8.8, 1H, H-5), 6.84 (brs, 1H, OH). 13C NMR (101 MHz, CDCl3) δ (ppm) 166.6, 146.6, 135.9, 135.4, 128.9, 126.9, 125.5.
1-Chloro-4-nitro-11H-pyrido[2,1-b]quinazolin-11-one (8)
To a solution of 2-aminopyridine (600 mg, 6.38 mmol, 1) in anhydrous DMF (40 mL) at 0 °C under an argon atmosphere, ΝaH (60% in mineral oil) (2.5 g, 62.5 mmol) was added in portions, and the resulting mixture was stirred for 30 min at room temperature. 2-Aminopyridine (1.5 g, 6.38 mmol) was added portion-wise at 0 °C, and the resulting suspension was stirred at 50 °C for 24 h. After completion of the reaction, the mixture was allowed to cool to room temperature, poured into ice-water, and acidified by the addition of 18% HCl solution (pH~3). The resulting precipitate was filtered off and dried under vacuum over P2O5 to afford 1.59 g (85%) of the title compound 8, which was practically pure and used for the next step without further purification. M.P.: 242–244 °C (EtOH). 1H NMR (600 MHz, DMSO-d6) δ (ppm): 8.84 (d, J = 7.1 Hz, 1H, H-9), 8.26 (d, J = 8.3 Hz, 1H, H-3), 7.88 (td, J = 8.4, 1.6 Hz, 1H, H-7), 7.58 (d, J = 8.4 Hz, 1H, H-2), 7.51 (d, J = 9.0 Hz, 1H, H-6), 7.20 (td, J = 8.4, 1.6 Hz, 1H, H-8). 13C NMR (151 MHz, DMSO-d6) δ (ppm): 155.5 (CO), 149.2 (C-5a), 145.0 (C-4a), 142.2 (C-1), 138.2 (C-7), 136.6 (C-3), 127.6 (C-3), 127.2 (C-9), 125.6 (C-6), 125.0 (C-2), 114.6 (C-11a), 114.0 (C-9).
8-Methoxy-4-nitro-1-chloro-11H-pyrido[2,1-b]quinazolin-11-one (9)
This compound was synthesized using a procedure analogous to that described for the preparation of compound 8, using compound 3. Yield: 91%. M.p.: 248–250 °C (EtOAc). 1H NMR (600 MHz, DMSO-d6) δ (ppm) 8.34 (d, J = 2.5 Hz, 1H, H-9), 8.27 (d, J = 8.3 Hz, 1H, H-3), 7.77 (dd, J = 7.07, 2.65 Hz, 1H, H-7), 7.61 (d, J = 8.3 Hz, 1H, H-2), 7.56 (d, J = 9.7 Hz, 1H, H-6), 3.93 (s, 3H, OCH3). 13C NMR (151 MHz, DMSO-d6) δ (ppm) 155.0 (CO), 149.3 (C-8), 146.6 (C-5a), 145.0 (C-4a), 141.6 (C-1), 136.4 (C-4), 133.6 (C-7), 127.3 (C-3), 126.9 (C-6), 125.2 (C-2), 113.2 (C-11a), 106.2 (C-9), 56.4 (OCH3).
1-((2-(Diethylamino)ethyl)amino)-4-nitro-11H-pyrido[2,1-b]quinazolin-11-one (10)
A solution of 8 (1 g, 3.64 mmol) and N,N-diethylethylenediamine (1 mL, 7.13 mmol) in THF (40 mL) was refluxed for 24 h. Upon cooling, the mixture was vacuum-evaporated and extracted with CH2Cl2 -water; the organic layer was dried (using Na2SO4) and evaporated to dryness. The residue was purified by column chromatography (silica gel, CH2Cl2-MeOH 10:0–9:1) to afford the title compound as a yellow solid (870 mg, 67% yield). M.p.: 123–125 °C (EtOAc). 1H NMR (600 MHz, CDCl3) δ (ppm): 9.87 ((brs, 1H, D2O exch., NH), 8.82 (d, J = 7.2 Hz, 1H, H-9), 8.32 (d, J = 9.3 Hz, 1H, H-3), 7.62 (t, J = 6.61 Hz, 1H, H-7), 7.55 (d, J = 9.0 Hz, 1H, H-6), 6.94 (t, J = 6.27 Hz, 1H, H-8), 6.34 (d, J = 9.3 Hz, 1H, H-2), 3.41 (q, J = 6.3 Hz, 2H, NHCH2CH2), 2.83 (t, J = 6.3 Hz, 2H, NHCH2CH2), 2.66 (q, J = 7.1 Hz, 4H, N(CH2CH3)2), 1.09 (t, J = 7.1 Hz, 6H, N(CH2CH3)2). 13C NMR (151 MHz, CDCl3) δ (ppm): 159.4 (CO), 154.9 (C-1), 148.7 (C-5a), 145.5 (C-4a), 136.2 (C-7), 134.6 (C-3), 131.1 (C-4), 126.7 (C-6), 126.4 (C-9), 113.6 (C-8), 101.8 (C-2), 100.7 (C-11a), 50.7 (NHCH2CH2), 46.9 (NH(CH2CH3)2), 41.3 (NHCH2CH2), 11.8 (NH(CH2CH3)2). m/z: calcd. for C18H22N5O3+: [M1 + H]+ = 356.1717, found 356.1724.
1-((2-(Dimethylamino)ethyl)amino)-4-nitro-11H-pyrido[2,1-b]quinazolin-11-one (11)
This compound was synthesized using a procedure analogous to that described for the preparation of 10, using compound 8 and N,N-dimethylethylenediamine. Yield: 76%. M.p.: 160–162 °C (EtOAc). 1H NMR (600 MHz, CDCl3) δ (ppm): 9.85 (brs, 1H, D2O exch., NH), 8.83 (d, J = 7.3 Hz, 1H, H-9), 8.33 (d, J = 9.3 Hz, 1H, H-3), 7.58–7.63 (m, 2H, H-6, H-7), 6.91 (t, J = 7.4 Hz, 1H, H-8), 6.34 (d, J = 9.3 Hz, 1H, H-2), 3.4 (q, J = 6.1 Hz, 2H, NHCH2CH2), 2.67 (t, J = 6.2 Hz, 2H, NHCH2CH2), 2.34 (s, 6H, N(CH3)2). 13C NMR (151 MHz, CDCl3) δ (ppm): 159.8 (CO), 155.1 (C-1), 148.9 (C-5a), 145.7 (C-4a), 136.2 (C-7), 134.9 (C-3), 131.6 (C-4), 127.0 (C-6), 126.6 (C-9), 113.7 (C-8), 101.8 (C-2), 101.0 (C-11a), 57.5 (NHCH2CH2), 45.6 (N(CH3)2), 41.2 (NHCH2CH2). m/z: calcd. for C16H18N5O3+: [M1 + H]+ = 328.1404, found 328.1411.
1-((3-(Diethylamino)propyl)amino)-4-nitro-11H-pyrido[2,1-b]quinazolin-11-one (12)
This compound was synthesized using a procedure analogous to that described for the preparation of 10, using compound 8 and N,N-diethyl-1,3-propanediamine. Yield: 56%. M.p.: 217–219 °C (EtOAc). 1H NMR (600 MHz, CDCl3) δ (ppm): 9.76 (brs, 1H, D2O exch., NH), 8.80 (d, J = 7.2 Hz, 1H, H-9), 8.34 (d, J = 9.3 Hz, 1H, H-3), 7.58–7.63 (m, 2H, H-6, H-7), 6.95 (t, J = 6.7 Hz, 1H, H-8), 6.40 (d, J = 9.3 Hz, 1H, H-2), 3.43 (q, J = 6.2 Hz, 2H, NHCH2CH2CH2), 2.61–2.63 (m, 6H, NHCH2CH2CH2, N(CH2CH3)2), 1.94 (quintet, J = 6.9 Hz, 2H, NHCH2CH2CH2), 1.06 (t, J = 7.2 Hz, 6H, N(CH2CH3)2). 13C NMR (151 MHz, CDCl3) δ (ppm): 159.9 (CO), 155.3 (C-1), 148.8 (C-5a), 145.6 (C-4a), 136.3 (C-7), 134.9 (C-3), 131.4 (C-4), 127.0 (C-6), 126.4 (C-9), 113.9 (C-8), 101.8 (C-2), 100.8 (C-11a), 50.3 (NHCH2CH2CH2 ), 47.1 (N(CH2CH3)2), 41.7 (NHCH2CH2CH2), 26.4 (NHCH2CH2CH2), 11.6 (N(CH2CH3)2). m/z: calcd. for C19H24N5O3+: [M1 + H]+ = 370.1874, found 370.1867.
1-((3-(Dimethylamino)propyl)amino)-4-nitro-11H-pyrido[2,1-b]quinazolin-11-one (13)
This compound was synthesized using a procedure analogous to that described for the preparation of 10, using compound 8 and N,N-dimethyl-1,3-propanediamine. Yield 94%. M.p.: 134–136 °C (EtOAc). 1H NMR (600 MHz, CDCl3) δ (ppm): 9.78 (brs, 1H, D2O exch., NH), 8.82 (d, J = 7.3 Hz, 1H, H-9), 8.35 (d, J = 9.4 Hz, 1H, H-3), 7.59–7.64 (m, 2H, H-6, H-7), 6.95 (t, J = 8.2 Hz, 1H, H-8), 6.42 (d, J = 9.4 Hz, 1H, H-2), 3.44 (q, J = 6.2 Hz, 2H, NHCH2CH2CH2), 2.45 (t, J = 6.9 Hz, 2H, NHCH2CH2CH2), 2.27 (s, 6H, N(CH3)2) 1.93 (quintet, J = 6.9 Hz, 2H, NHCH2CH2CH2). 13C NMR (151 MHz, CDCl3) δ (ppm): 159.9 (CO), 155.3 (C-1), 148.8 (C-5a), 145.7 (C-4a), 136.2 (C-7), 134.9 (C-3), 131.5 (C-4), 127.1 (C-6), 126.4 (C-9), 113.8 (C-8), 101.8 (C-2), 100.9 (C-11a), 57.1 (NHCH2CH2CH2), 45.6 (N(CH3)2), 41.56 (NHCH2CH2CH2), 26.9 (NHCH2CH2CH2). m/z: calcd. for C17H20N5O3+: [M1 + H]+ = 342.1561, found 342.1569.
1-((2-(Diethylamino)ethyl)amino)-8-methoxy-4-nitro-11H-pyrido[2,1-b]quinazolin-11-one (14)
This compound was synthesized using a procedure analogous to that described for the preparation of 10, using compound 9 and N,N-diethylethylenediamine. Yield: 63%. M.p.: 140–142 °C (EtoAc). 1H NMR (600 MHz, CDCl3) δ (ppm): 9.94 (brs, 1H, D2O exch., NH), 8.38 (d, J = 9.3 Hz, 1H, H-3), 8.32 (s, J = 2.67 Hz, 1H, H-9), 7.58 (d, J = 9.7 Hz,1H, H-6), 7.45 (dd, J = 9.73, 2.74 Hz 1H, H-7), 6.37 (d, J = 9.4 Hz, 1H, H-2), 3.93 (s, 3H, OCH3), 3.41 (q, J = 6.4 Hz, 2H, NHCH2CH2), 2.83 (t, J = 6.3 Hz, 2H, NHCH2CH2), 2.65 (q, J = 7.1 Hz, 4H, N(CH2CH3)2), 1.10 (t, J = 7.12 Hz, 6H, N(CH2CH3)2). 13C NMR (151 MHz, CDCl3) δ (ppm): 159.4 (CO), 155.1 (C-1), 149.7 (C-8), 146.5 (C-5a), 145.3 (C-4a), 134.7 (C-3), 132.6 (C-7), 131.3 (C-4), 127.9 (C-6), 105.5 (C-9), 101.7 (C-2), 100.8 (C-11a), 56.5 (OCH3), 51.0 (NHCH2CH2), 47.1 (N(CH2CH3)2), 41.6 (NHCH2CH2), 12.0 (N(CH2CH3)2). m/z: calcd. for C19H24N5O4+: [M1 + H]+ = 386.1823, found 386.1830.
1-((2-(Dimethylamino)ethyl)amino)-8-methoxy-4-nitro-11H-pyrido[2,1-b]quinazolin-11-one (15)
This compound was synthesized using a procedure analogous to that described for the preparation of 10, using compound 9 and N,N-dimethylethylenediamine. Yield: 50%. M.p.: 193–195 °C (EtOAc). 1H NMR (600 MHz, CDCl3) δ (ppm): 9.90 (brs, 1H, D2O exch., NHCO), 8.37 (d, J = 9.3 Hz, 1H, H-3), 8.34 (s, 1H, H-9), 7.58 (d, J = 9.7 Hz, 1H, H-6), 7.44 (dd, J = 9.7, 2.26Hz, 1H, H-7), 6.36 (d, J = 9.4, Hz, 1H, H-2), 3.92 (s, 3H, OCH3), 3.42 (q, J = 11.0, 6.0 Hz, 2H, NHCH2CH2), 2.70 (t, J= 9.7 Hz, 2H, NHCH2CH2), 2.36 (s, 6H, N(CH3)2). 13C NMR (151 MHz, CDCl3) δ (ppm): 159.5 (CO), 155.0 (C-1), 149.7 (C-8), 146.5 (C-5a), 145.2 (C-4a), 134.7 (C-3), 132.7 (C-7), 131.4 (C-4), 127.9 (C-6), 105.5 (C-9), 101.6 (C-2), 100.8 (C-11a), 57.6 (NHCH2CH2), 56.5 (OCH3), 45.6 (N(CH3)2), 41.2 (NHCH2CH2). m/z: calcd. for C17H20N5O4+: [M1 + H]+ = 358.1510, found 358.1517.
1-((3-(Diethylamino)propyl)amino)-8-methoxy-4-nitro-11H-pyrido[2,1-b]quinazolin-11-one (16)
This compound was synthesized using a procedure analogous to that described for the preparation of 10, using compound 9 and N,N-diethyl-1,3-propanediamine. Yield: 53%. M.p.: 230 °C (dec). 1H NMR (600 MHz, CDCl3) δ (ppm) 9.94 (t, 1H, J = 5.0 Hz, D2Oexch., NH), 8.36 (d, J = 9.2 Hz, 1H, H-3), 8.27 (d, J = 2.6 Hz, 1H, H-9), 7.59 (d, J = 9.8 Hz, 1H, H-6), 7.48 (dd, J = 9.8, 2.7 Hz, 1H, H-7), 6.39 (d, J = 9.3, Hz, 1H, H-2), 3.94 (s, 3H, OCH3), 3.56 (q, J = 6.2 Hz, 2H, NHCH2CH2CH2), 2.30 (quintet, J = 6.8 Hz, 2H, NHCH2CH2CH2), 3.07–3.09 (m, 6H, N(CH2CH3)2, NHCH2CH2CH2), 1.73 (t, J = 7.2 Hz, 6H, N(CH2CH3)2). 13C NMR (50 MHz, CDCl3) δ (ppm) 159.5 (CO), 155.1 (C-1), 149.8 (C-8), 146.4 (C-5a), 145.1 (C-4a), 134.7 (C-3), 132.7 (C-7), 131.2 (C-4), 127.9 (C-6), 105.2 (C-9), 101.6 (C-2), 100.6 (C-11a), 56.4 (OCH3), 51.0 (NHCH2CH2CH2), 46.9 (N(CH2CH3)2), 41.5 (NHCH2CH2CH2), 26.2 (NHCH2CH2CH2), 11.4 (N(CH2CH3)2). m/z: calcd. for C20H26N5O4+: [M1 + H]+ = 400.1979, found 400.1972.
1-((3-(Dimethylamino)propyl)amino)-8-methoxy-4-nitro-11H-pyrido[2,1-b]quinazolin-11-one (17)
This compound was synthesized using a procedure analogous to that described for the preparation of 10, using compound 9 and N,N-dimethyl-1,3-propanediamine. Yield: 61%. M.p.: 164–167 °C (EtOAc). 1H NMR (600 MHz, CDCl3) δ (ppm): 9.80 (brs, 1H, D2O exch., NH), 8.34 (d, J = 9.2 Hz, 1H, H-3), 8.27 (d, J = 2.66 Hz, 1H, H-9), 7.55 (d, J = 9.7 Hz,1H, H-6), 7.44 (dd, J = 9.7, 2.7 Hz, 1H, H-7), 6.39 (d,J = 8.9 Hz, 1H, H-2), 3.92 (s, 3H, OCH3), 3.42 (q, J = 6.8 Hz, 2H, NHCH2CH2CH2), 2.45 (t, J = 6.9 Hz, 2H, NHCH2CH2CH2), 2.27 (s, 1H, 6H, N(CH3)2), 1.94 (quintet, J = 7.0 Hz, 2H, NHCH2CH2CH2). 13C NMR (50 MHz, CDCl3) δ (ppm): 159.5 (CO), 155.2 (C-1), 149.8 (C-8), 146.4 (C-5a), 145.1 (C-4a), 134.7 (C-3), 132.6 (C-7), 131.2 (C-4), 127.9 (C-6), 105.2 (C-9), 101.6 (C-2), 100.7 (C-11a), 57.0 (NHCH2CH2CH2), 56.4 (OCH3), 45.6 (N(CH3)2), 41.5 (NHCH2CH2CH2), 26.9 (NHCH2CH2CH2). m/z: calcd. for C18H22N5O4+: [M1 + H]+ = 372.1666, found 372.1673.
2-(Diethylamino)-N-(1-((2-(diethylamino)ethyl)amino)-11-oxo-11H-pyrido[2,1-b]quinazolin-4-yl)acetamide (34)
A mixture of compound 10 (150 mg, 0.42 mmol), ammonium formate (400 mg, 6.30 mmol), and a catalytic amount of 10% palladium charcoal (45 mg) in anhydrous methanol (20 mL) was placed in a quartz tube, and the resulting suspension was heated under microwaves at 70 °C (150 W) for 2 min. The catalyst was filtered through celite, and the solvent was evaporated under a vacuum. The obtained crude compound 18 was immediately dissolved in THF (25 mL) and CH2Cl2 (5 mL) without any further purification, and Na2CO3 (1.6 g, 15.12 mmol) and chloroacetyl chloride (0.6 mL, 7.56 mmol) were added. The resulting suspension was stirred at room temperature for 12 h, and the organic solvent was evaporated under vacuum. The residue was dissolved in CH2Cl2, washed with a 10% Na2CO3 solution and water, dried over Na2SO4, and evaporated. Without further purification, the residue was dissolved in a mixture of abs. ethanol (20 mL) and CH2Cl2 (2 mL), diethylamine (3.5 mL, 33.8 mmol) was added. The resulting solution was then refluxed for 72 h. Upon cooling, the mixture was vacuum-evaporated and extracted with CH2Cl2-water. The organic layer was dried (using Na2SO4) and evaporated to dryness. The residue was purified by column chromatography (silica gel, CH2Cl2-MeOH 97:3–90:10) to afford the title compound as an orange solid (80 mg, 74%). M.p.: 90–92 °C (EtOAc). 1H NMR (400 MHz, CDCl3) δ (ppm): 10.81 (brs, 1H, D2O exch., NHCO), 8.80 (d, J = 8.9 Hz, 1H, H-3), 8.76 (d, J = 7.4 Hz, 1H, H-9), 8.49 (brs, 1H, D2O exch., NHCH2CH2,) 7.40 (t, J = 7.8 Hz, 1H, H-7), 7.34 (d, J = 9.0 Hz, 1H, H-6), 6.77 (t, J = 6.7 Hz, 1H, H-8), 6.47 (d, J = 8.9 Hz, 1H, H-2), 3.50 (brs, 2H, NHCH2CH2), 3.24 (s, 2H, COCH2), 2.98 (t, J = 6.7 Hz, 2H, NHCH2CH2), 2.85 (q, J = 7.1 Hz, 4H, CH2CH2N(CH2CH3)2), 2.70 (q, J = 7.1 Hz, 4H, COCH2N(CH2CH3)2), 1.20–1.15 (m, 12H, CH2CH2N(CH2CH3)2, COCH2N(CH2CH3)2). 13C NMR (50 MHz, CDCl3) δ (ppm): 169.7 (NHCO), 160.0 (CO), 146.7 (C-4a, C-5a), 139.6 (C-1), 134.2 (C-7), 126.5 (C-9), 126.1 (C-3), 126.0 (C-6), 121.0 (C-4), 112.0 (C-8), 103.0 (C-2), 101.7 (C-11a), 59.2 (COCH2), 51.3 (CH2CH2N(CH2CH3)2), 48.6 (COCH2N(CH2CH3)2), 47.2 (CH2CH2N(CH2CH3)2), 41.2 (CH2CH2N(CH2CH3)2), 12.9 (COCH2N(CH2CH3)2), 11.7 (CH2CH2N(CH2CH3)2). m/z: calcd. for C24H35N6O2+: [M1 + H]+ = 439.2816, found 439.2811.
2-(Dimethylamino)-N-(1-((2-(dimethylamino)ethyl)amino)-11-oxo-11H-pyrido[2,1-b]quinazolin-4-yl)acetamide (35)
This compound was synthesized using a procedure analogous to that described for the preparation of 34, using compound 11 and dimethylamine. Yield: 47%. M.p.: 230 °C (dec) (EtOAc). 1H NMR (400 MHz, CDCl3) δ (ppm): 10.40 (brs, 1H, D2O exch., NHCO), 8.73 (d, J = 7.2 Hz, 1H, H-3), 8.68 (d, J = 8.8 Hz, 1H, H-9), 8.45 (t,J = 4.5 Hz, 1H, D2O exch., NHCH2CH2,), 7.46 (t, J = 9.0 Hz, 1H, H-7), 7.35 (d, J = 9.0 Hz, 1H, H-6), 6.81 (t, J = 10.04 Hz, 1H, H-8), 6.47 (d, J = 8.9 Hz, 1H, H-2), 3.64 (q, J = 6.3 Hz, 2H, NHCH2CH2), 3.17 (s, 2H, COCH2), 3.02 (t, J = 6.3 Hz, 2H, NHCH2CH2), 2.63 (s, 6H, CH2CH2N(CH3)2), 2.45 (s, 6H, COCH2N(CH3)2). 13C NMR (50 MHz, CDCl3+1drop of MeOD) δ (ppm): 168.5 (NHCO), 160.1 (CO), 146.9 (C-5a), 145.6 (C-4a), 140.2 (C-1), 134.7 (C-7), 126.3 (C-9, C-3, C-6), 121.2 (C-4), 112.7 (C-8), 102.6 (C-2), 101.7 (C-11a), 63.6 (COCH2), 56.4 (CH2CH2N(CH3)2), 46.0 (COCH2N(CH3)2), 44.0 (CH2CH2N(CH3)2), 39.0 CH2CH2N(CH3)2). m/z: calcd. for C20H27N6O2+: [M1 + H]+ = 383.2190, found 383.2199.
2-(Diethylamino)-N-(1-((3-(diethylamino)propyl)amino)-11-oxo-11H-pyrido[2,1-b]quinazolin-4-yl)acetamide (36)
This compound was synthesized using a procedure analogous to that described for the preparation of 34, using compound 12 and diethylamine. Yield: 35%. M.p.: 86–88 °C (EtOAc). 1H NMR (400 MHz, CDCl3) δ (ppm): 10.70 (brs, 1H, D2O exch., NHCO), 8.67 (d, J = 8.9 Hz, 1H, H-3), 8.63 (d, J = 7.4 Hz, 1H, H-9), 8.26 (t, J = 4.7 Hz, 1H, D2O exch., NHCH2CH2CH2), 7.39 (t, J = 7.8 Hz, 1H, H-7), 7.23 (d, J = 7.7 Hz, 1H, H-6), 6.71 (t, J = 7.0 Hz, 1H, H-8), 6.34 (d, J = 10.8 Hz, 1H, H-2), 3.27 (q, J = 6.8 Hz, 2H, NHCH2CH2CH2), 3.16 (s, 2H, COCH2), 2.96 (t, 2H, J = 7.1 Hz, NHCH2CH2CH2), 2.84 (q, J = 7.1 Hz, 4H, CH2CH2CH2N(CH2CH3)2), 2.62 (q, J = 7.2 Hz, 4H, COCH2N(CH2CH3)2), 2.12 (quintet, J = 7.59, 2H, NHCH2CH2CH2), 1.27 (t, J = 7.12 Hz, 6H, CH2CH2CH2N(CH2CH3)2), 1.09 (t, J = 7.1 Hz, 6H, COCH2N(CH2CH3)2,). 13C NMR (50 MHz, CDCl3) δ (ppm): 170.0 (HNCO), 160.0 (CO), 146.6 (C-5a), 146.1 (C-4a), 139.7 (C-1), 134.5 (C-7), 126.1 (C-9), 125.9 (C-3), 125.7 (C-6), 121.2 (C-4), 112.4 (C-8), 102.6 (C-2), 101.6 (C-11a), 58.2 (COCH2), 48.8 (NHCH2CH2CH2), 47.9 (COCH2N(CH2CH3)2), 46.2 (NHCH2CH2CH2N(CH2CH3)2), 39.7 (NHCH2CH2CH2), 22.6 (NHCH2CH2CH2), 12.1 (COCH2CH2N(CH2CH3), 8.3 (CH2CH2CH2N(CH2CH3)2). m/z: calcd. for C25H37N6O2+: [M1 + H]+ = 453.2973, found 453.2965.
2-Dimethylamino-N-(1-((3-(dimethylamino)propyl)amino)-11-oxo-11H-pyrido[2,1-b]quinazolin-4-yl)acetamide (37)
This compound was synthesized using a procedure analogous to that described for the preparation of 34, using compound 13 and dimethylamine. Yield: 27%. M.p.: 98–100 °C (EtOAc). 1H NMR (400 MHz, CDCl3) δ (ppm): 10.40 (brs, 1H, D2O exch., NHCO), 8.71–8.74 (m, 2H, H-3, H-9), 8.36 (brs, 1H, D2O exch., NHCH2CH2CH2, D2Oexchange), 7.43 (t, J = 6.3 Hz, 1H, H-7), 7.36 (d, J = 9.0 Hz, 1H, H-6), 6.77 (t, J = 7.5 Hz, 1H, H-8), 6.46 (d, J = 9.0 Hz, 1H, H-2), 3.30 (q, J = 12.1, 6.7 Hz, 2H, NHCH2CH2CH2), 3.16 (s, 2H, COCH2) 2.43–2.47 (m, 8H, NHCH2CH2CH2, CH2CH2CH2N(CH3)2), 2.29 (s, 6H, COCH2N(CH3)2), 1.92 (quintet, J = 7.12 Hz, 2H, NHCH2CH2CH2). 13C NMR (50 MHz, CDCl3) δ (ppm): 168.4 (HNCO), 160.3 (CO), 147.2 (C-5a), 146.8 (C-4a), 139.9(C-1), 134.2 (C-7), 126.7 (C-9), 126.5 (C-3, C-6), 120.7 (C-4), 112.2 (C-8), 103.1 (C-2), 101.7 (C-11a), 64.4 (COCH2), 57.3 (NHCH2CH2CH2), 46.4 (COCH2N(CH3)2), 45.7 (NHCH2CH2CH2N(CH3)2), 41.5 (NHCH2CH2CH2), 27.3 (NHCH2CH2CH2). m/z: calcd. for C21H29N6O2+: [M1 + H]+ = 397.2347, found 397.2354.
2-Diethylamino-N-(1-((2-(diethylamino)ethyl)amino)-8-methoxy-11-oxo-11H-pyrido[2,1-b]quinazolin-4-yl)acetamide (38)
A suspension of 14 (200 mg, 0.52 mmol), ammonium formate (50 mg, 0.78 mmol), and activated zinc (136 mg, 2.08 mmol) in anhydrous methanol (10 mL) was stirred at room temperature for 1 h. After completion of the reaction, the mixture was filtered through a Celite pad, and the filtrate was evaporated to dryness. Without further purification, the obtained crude 22 was immediately dissolved in a mixture of THF (25 mL) and CH2Cl2 (5 mL), and Na2CO3 (170 mg, 1.56 mmol) and chloroacetyl chloride (0.06 mL, 0.78 mmol) were added to this solution. The resulting suspension was stirred for 15 min at room temperature. The solvent was then evaporated under vacuum, and the residue was dissolved in CH2Cl2, washed with water, dried over Na2SO4, and evaporated to dryness to obtain the oil corresponding to compound 30. Without further purification, the residue was dissolved in a mixture of absolute. ethanol (20 mL) and) and2 (2 mL), and diethylamine (3.5 mL, 33.8 mmol) was added to this solution. The resulting mixture was then refluxed for 72 h. Upon cooling, the mixture was vacuum-evaporated and extracted with CH2Cl2 -water; the organic layer was dried (anhydrous Na2SO4) and evaporated to dryness. The residue was purified by column chromatography (silica gel, CH2Cl2-MeOH 100:0–75:25) to afford the title compound as an orange solid (20 mg, 18% yield). M.p.: 144–146 °C (EtOAc). 1H NMR (600 MHz, CDCl3) δ (ppm): 10.76 (brs, 1H, D2O exch., NHCO), 8.77 (d, J = 8.9 Hz, 1H, H-3), 8.44 (t, J = 4.6 Hz, 1H, D2O exch., NHCH2CH2), 8.22 (d, J = 2.6 Hz, 1H, H-9), 7.29 (d, J = 9.6 Hz, 1H, H-6), 7.26 (dd, J = 9.75, 2.57 Hz, 1H, H-7), 6.44 (d, J = 8.9 Hz, 1H, H-2), 3.87 (s, 3H, OCH3), 3.405 (q, J = 6.2 Hz, 3H, NHCH2CH2), 3.22 (s, 2H, COCH2), 3.01 (t, J = 6.5 Hz, 2H, NHCH2CH2), 2.62–2.68 (m, 4H, NHCH2CH2N(CH2CH3)2, COCH2N(CH2CH3)2), 1.21–1.07 (m, 12H, HNCH2CH2N(CH2CH3)2, COCH2N(CH2CH3)2). 13C NMR (151 MHz, CDCl3) δ (ppm): 169.7 (NHCO), 159.8 (CO), 148.4 (C-8), 146.3 (C-5a), 144.3 (C-4a), 139.5 (C-1), 131.0 (C-7), 127.0 (C-6), 125.3 (C-3), 121.1 (C-4), 105.0 (C-9), 102.9 (C-2), 101.6 (C-11a), 59.2 (COCH2), 56.3 (OCH3), 51.4 (NHCH2CH2), 48.7 (COCH2N(CH2CH3)2), 47.3 (NHCH2CH2N(CH2CH3)2), 41.3 (NHCH2CH2), 12.9 (COCH2N(CH2CH3)2), 11.7 (NHCH2CH2N(CH2CH3)2). m/z: calcd. for C25H37N6O3+: [M1 + H]+ = 469.2922, found 469.2915.
2-Dimethylamino-N-(1-((2-(dimethylamino)ethyl)amino)-8-methoxy-11-oxo-11H-pyrido[2,1-b]quinazolin-4-yl)acetamide (39)
This compound was synthesized using a procedure analogous to that described for the preparation of 38, using compound 15 and dimethylamine. Yield: 35%. M.p.: 108–110 °C (dec) (EtOAc). 1H NMR (600 MHz, CDCl3) δ (ppm): 10.38 (s, br,1H,NHCO, D2Oexchange), 8.69 (d, J = 8.8 Hz, 1H, H-3), 8.52 (s, br, 1H, NHCH2CH2, D2Oexchange), 8.24 (d, J= 2.5 Hz, 1H, H-9), 7.35 (d, J = 9.8 Hz, 1H, H-6), 7.29 (dd, J = 9.7, 2.6 Hz, 1H, H-7), 6.45 (d, J = 8.9 Hz, 1H, H-2), 3.89 (s, 3H, OCH3), 3.51 (q, J = 4.8 Hz, 2H, NHCH2CH2), 3.17 (s, 2H, COCH2), 2.89 (t, 2H, J = 6.0 Hz, NHCH2CH2), 2.71 (s, 6H, COCH2N(CH3)2), 2.45 (s, 6H, NHCH2CH2N(CH3)2). 13C NMR (151 MHz, MeOD-d4) δ (ppm): (NHCO), 161.0 (CO), 150.7 (C-8), 147.8 (C-5a), 146.6 (C-4a), 142.4 (C-1), 133.3 (C-7), 128.8 (C-6), 127.7 (C-3), 121.6 (C-4), 106.2 (C-9), 103.5 (C-2), 101.2 (C-11a), 60.3 (COCH2), 57.2 (NHCH2CH2), 56.8 (OCH3), 44.6 (NHCH2CH2N(CH3)2), 44.1 (COCH2N(CH3)2), 39.2 (NHCH2CH2). m/z: calcd. for C21H29N6O3+: [M1 + H]+ = 413.2296, found 413.2290.
2-Diethylamino-N-(1-((3-(diethylamino)propyl)amino)-8-methoxy-11-oxo-11H-pyrido[2,1-b]quinazolin-4-yl)acetamide (40)
This compound was synthesized using a procedure analogous to that described for the preparation of 38, using compound 16 and diethylamine. Yield: 29%. M.p.: 148–150 °C (dec) (EtOAc). 1H NMR (400 MHz, CDCl3) δ (ppm): 10.77 (brs, 1H, D2O exch., NHCO), 8.75 (d, J = 9.3 Hz, 1H, H-3), 8.39 (brs, 1H, D2O exch., NHCH2CH2CH2, D2Oexchange), 8.19 (s, 1H, H-9), 7.37 (d, J = 9.7 Hz, 1H, H-6), 7.30 (dd, J = 9.8, 2.6 Hz, 1H, H-7), 6.40 (d,J = 11.5 Hz, 1H, H-2), 6.43 (d, J = 10 Hz, 1H, H-2), 3.91 (s, 3H, OCH3), 3.41 (q, J = 2.6 Hz, 2H, NHCH2CH2CH2), 3.12 (s, 2H, COCH2), 3.09 (m, 6H, NHCH2CH2CH2, CH2CH2CH2N(CH2CH3)2), 2.70 (q, J = 7.1 Hz, 4H, COCH2N(CH2CH3)2), 2.20 (quintet, J = 8.02 Hz, 2H, NHCH2CH2CH2), 1.36 (t, J = 7.3 Hz, 6H, CH2CH2CH2N(CH2CH3)2), 1.16 (t, J = 7.11 Hz, 6H, COCH2N(CH2CH3)2). 13C NMR (50 MHz, CDCl3) δ (ppm): 169.5 (NHCO), 160.050 (CO), 148.6 (C-8), 146.1 (C-5a), 144.5 (C-4a), 139.5 (C-1), 131.3 (C-7), 126.8 (C-6), 126.2 (C-3), 121.5 (C-4), 104.9 (C-9), 102.6 (C-2), 101.6 (C-11a), 56.3 (COCH2), 49.5 (OCH3), 48.5 (NHCH2CH2CH2), 46.4 (COCH2CH2N(CH2CH3)2), 46.4 (CH2CH2CH2N(CH2CH3)2), 41.1 (NHCH2CH2CH2), 24.4 (NHCH2CH2CH2), 10.5 (COCH2CH2N(CH2CH3)2), 9.9 (CH2CH2CH2N(CH2CH3)2). m/z: calcd. for C26H39N6O3+: [M1 + H]+ = 483.3078, found 483.3084.
2-Dimethylamino-N-(1-((3-(dimethylamino)propyl)amino)-8-methoxy-11-oxo-11H-pyrido[2,1-b]quinazolin-4-yl)acetamide (41)
This compound was synthesized using a procedure analogous to that described for the preparation of 38, using compound 17 and dimethylamine. Yield: 35%. M.p.: 210 °C (dec) (EtOAc). 1H NMR (600 MHz, CDCl3) δ (ppm): 10.37 (brs, 1H, D2O exch., NHCO), 8.69 (d, J = 8.8 Hz, 1H, H-3), 8.21 (s, J = 2.5 Hz, 1H, H-9), 7.38 (d, J = 9.8 Hz, 1H, H-6), 7.31 (dd, J = 9.8, 2.6 Hz, 1H, H-7), 6.40 (d, J = 8.9Hz, 1H,H-2), 3.91 (s, 3H, OCH3), 3.42 (q, J = 6.4 Hz, 2H, NHCH2CH2CH2), 3.20 (s, 2H, COCH2), 3.09 (t, J = 4.06 Hz, 2H, NHCH2CH2CH2), 2.76 (s, 6H, NHCH2CH2CH2N(CH3)2), 2.49 (s, 6H, COCH2N(CH3)2), 2.24 (quintet, J = 7.9 Hz, 2H, NHCH2CH2CH2). 13C NMR (50 MHz, CDCl3+1drop Acetone-d6) δ (ppm): 168.4 (NHCO), 160.0 (CO), 148.8 (C-8), 145.9 (C-5a), 144.6 (C-4a), 139.8 (C-1), 131.2 (C-7), 127.3 (C-6), 125.68 (C-3), 121.4 (C-4), 104.8 (C-9), 102.8 (C-2), 101.9 (C-11a), 64.2 (COCH2), 56.3 (NHCH2CH2CH2), 56.1 (OCH3), 46.1 (COCH2N(CH3)2), 43.0 (NHCH2CH2CH2N(CH3)2), 40.4 (NHCH2CH2CH2), 24.2 (NHCH2CH2CH2). m/z: calcd. for C22H31N6O3+: [M1 + H]+ = 427.2452, found 427.2457.
3-(Diethylamino)-N-(1-((2-(diethylamino)ethyl)amino)-11-oxo-11H-pyrido[2,1-b]quinazolin-4-yl)propanamide (50)
This compound was synthesized using a procedure analogous to that described for the preparation of 34, using compound 10, 3-cloropropionyl chloride, and diethylamine. Yield: 32%. 1H NMR (400 MHz, CDCl3) δ (ppm): 9.87 (brs, 1H, D2O exch., NHCO), 8.69 (d, J = 7.3 Hz, 1H, H-3), 8.61 (d, J = 8.8 Hz, 1H, H-9), 8.43 (t, J = 4.6 Hz, 1H, D2O exch., NHCH2CH2), 7.45 (t, J = 5.1 Hz, 1H, H-7), 7.35 (d, J = 9.1 Hz, 1H, H-6), 6.76 (t, J = 6.4 Hz, 1H, H-8), 6.41 (d, J = 8.8 Hz, 2H, H-2), 3.19 (q, J = 6.5 Hz, 2H, NHCH2CH2), 2.89–3.07 (m, 10H, NHCH2CH2, COCH2CH2, NHCH2CH2N(CH2CH3)2, 2.77 (q, J = 7. 1Hz, 4H, COCH2CH2N(CH2CH3)2), 1.27 (t, J = 7.1 Hz, 6H, NHCH2CH2N(CH2CH3)2, 1.14 (t, J = 6.9 Hz, 6H, COCH2CH2N(CH2CH3)2). 13C NMR (50 MHz, CDCl3) δ (ppm): 169.7 (HNCO), 160.0 (CO), 146.7 (C-5a), 146.6 (C-4a), 139.5 (C-1), 134.3 (C-7), 126.9 (C-3), 126.5 (C-9), 125.7 (C-6), 121.4 (C-4), 111.9 (C-8), 102.9 (C-2), 101.6 (C-11a), 51.3 (NHCH2CH2,) 48.6 (COCH2CH2), 47.2 (COCH2CH2N(CH2CH3)2), 46.5 (NHCH2CH2N(CH2CH3)2), 41.1 (NHCH2CH2), 34.3(COCH2CH2), 11.7 (COCH2CH2N(CH2CH3)2), 10.8 (NHCH2CH2N(CH2CH3)2). m/z: calcd. for C25H37N6O2+: [M1 + H]+ = 453.2973, found 453.2978.
3-(Dimethylamino)-N-(1-((2-(dimethylamino)ethyl)amino)-11-oxo-11H-pyrido[2,1-b]quinazolin-4-yl)propanamide (51)
This compound was synthesized using a procedure analogous to that described for the preparation of 34, using compound 11, 3-cloropropionyl chloride, and dimethylamine. Yield: 38%. M.p.: 258–260 °C (EtOAc). 1H NMR (400 MHz, CDCl3) δ(ppm): 10.25 (brs, 1H, D2O exch., NHCO), 8.64 (d, J = 7.3 Hz, 1H, H-3), 8.55 (d, J = 8.9 Hz, 1H, H-9), 8.37 (brs, 1H, D2O exch., 1H, NHCH2CH2CH2), 7.39 (t, J = 8.1 Hz, 1H, H-7), 7.27 (d, J = 7.8 Hz, 1H, H-6), 6.72 (t, J = 6.9 Hz, 1H, H-8), 6.34 (d, J = 9.0 Hz 1H, H-2), 3.29 (q, J = 7.0 Hz, 2H, NHCH2CH2), 2.82 (t, J = 6.6 Hz, 2H, COCH2CH2), 2.65–2.69 (m, 4H, NHCH2CH2, COCH2CH2,), 2.41 (s, 6H, CH2CH2CH2N(CH3)2), 2.28 (s, 6H, COCH2CH2N(CH3)2). 13C NMR (151 MHz, CDCl3) δ (ppm): 168.8 (HNCO), 160.1 (CO), 146.8 (C-5a), 146.7 (C-4a), 139.7 (C-1), 134.6 (C-7), 126.8 (C-3), 126.5 (C-9), 125.9 (C-6), 121.3 (C-4), 112.9 (C-8), 102.8 (C-2), 101.7 (C-11a), 57.8 (NHCH2CH2), 54.7 (COCH2CH2), 45.4 (COCH2CH2N(CH3)2), 44.6 (NHCH2CH2CH2N(CH3)2), 40.8 (NHCH2CH2), 34.2 (COCH2CH2). m/z: calcd. for C21H29N6O2+: [M1 + H]+ = 397.2347, found 397.2341.
3-(Diethylamino)-N-(1-((3-(diethylamino)propyl)amino)-11-oxo-11H-pyrido[2,1-b]quinazolin-4-yl)propanamide (52)
This compound was synthesized using a procedure analogous to that described for the preparation of 34, using compound 12, 3-cloropropionyl chloride, and diethylamine. Yield: 40%. 1H NMR (400 MHz, CDCl3) δ (ppm): 10.70 (brs, 1H, D2O exch., NHCO), 8.78 (d, J = 8.9 Hz, 1H, H-3), 8.69 (d, J = 6.9 Hz, 1H, H-9), 8.34 (brs, 1H, D2O exch., NHCH2CH2CH2), 7.38 (t, J = 8.4, 7.3 Hz, 1H, H-7), 7.27 (d, J = 7.7 Hz, 1H, H-6), 6.71 (t, J = 6.3 Hz, 1H, H-8), 6.42 (d, J= 8.7 Hz, 1H, H-2), 3.25 (q, J = 5.9 Hz, 2H, NHCH2CH2CH2), 2.82 (t, J = 6.3 Hz, 2H, COCH2CH2), 2.67 (q, J = 7.0 Hz, 4H, CH2CH2CH2N(CH2CH3)2) 2.50–2.58 (m, 8H, NHCH2CH2CH2, COCH2CH2, COCH2CH2N(CH2CH3)2), 1.86 (quintet, J = 6.9 Hz, 2H, NHCH2CH2CH2), 1.10 (t, J = 7.1 Hz, 6H, CH2CH2CH2N(CH2CH3)2), 1.02 (t, J = 7.1 Hz, 6H, COCH2CH2N(CH2CH3)2). 13C NMR (50 MHz, CDCl3) δ (ppm): 170.6 (HNCO), 160.2 (CO), 146.9 (C-5a), 146.4 (C-4a), 139.5 (C-1), 134.1 (C-7), 127.2 (C-3), 126.4 (C-9), 125.8 (C-6), 121.7 (C-4), 111.9 (C-8), 103.1 (C-2), 101.5 (C-11a), 50.6 (NHCH2CH2CH2), 48.8 (COCH2CH2), 47.0 (COCH2CH2N(CH2CH3)2), 46.6 (CH2CH2CH2N(CH2CH3)2), 41.6 (NHCH2CH2CH2), 34.9 (COCH2CH2), 26.6 (NHCH2CH2CH2), 11.8 (COCH2CH2N(CH2CH3)2), 11.5 (NHCH2CH2CH2N(CH2CH3)2). m/z: calcd. for C26H39N6O2+: [M1 + H]+ = 467.3129, found 467.3135.
3-Dimethylamino-N-(1-((3-(dimethylamino)propyl)amino)-11-oxo-11H-pyrido[2,1-b]quinazolin-4-yl)propanamide (53)
This compound was synthesized using a procedure analogous to that described for the preparation of 34, using compound 13, 3-cloropropionyl chloride, and dimethylamine. Yield: 24%. 1H NMR (400 MHz, CDCl3) δ (ppm): 10.68 (brs, 1H, D2O exch., NHCO), 8.73–8.78 (m, 2H, H-3, H-9), 8.36 (brs, 1H, D2O exch., NHCH2CH2CH2), 7.44 (t, J = 7.7 Hz, 1H, H-7), 7.34 (d, J = 9.0 Hz, 1H, H-6), 6.77 (t, J = 6.9 Hz, 1H, H-8), 6.46 (d, J = 9.0 Hz, 1H, H-2), 3.31 (q, J = 6.2 Hz, 2H, NHCH2CH2CH2), 2.78 (t, J = 6.2 Hz, 2H, COCH2CH2), 2.65 (t, J = 6.2 Hz, 2H, COCH2CH2), 2.54 (t, J = 7.3 Hz, 2H, NHCH2CH2CH2), 2.44 (s, 6H, NHCH2CH2CH2N(CH3)2), 2.35 (s, 6H, COCH2CH2N(CH3)2), 1.95 (quintet, J = 14.2, 7.0 Hz, 2H, NHCH2CH2CH2). 13C NMR (151 MHz, CDCl3) δ (ppm): 169.8 (HNCO), 160.3 (CO), 146.8 (C-5a), 146.6 (C-4a), 139.6 (C-1), 134.3 (C-7), 127.1 (C-3), 126.5 (C-9), 126.1 (C-6), 121.7 (C-4), 112.1 (C-8), 103.2 (C-2), 101.6 (C-11a), 57.3 (NHCH2CH2CH2), 55.2 (COCH2CH2), 45.1 (COCH2CH2N(CH3)2), 45.1 (NHCH2CH2CH2N(CH3)2), 41.3 (NHCH2CH2CH2), 34.9 (COCH2CH2), 26.6 (NHCH2CH2CH2). m/z: calcd. for C22H31N6O2+: [M1 + H]+ = 411.2503, found 411.2496.
3-(Diethylamino)-N-(1-((2-(diethylamino)ethyl)amino)-8-methoxy-11-oxo-11H-pyrido[2,1-b]quinazolin-4-yl)propanamide (54)
This compound was synthesized using a procedure analogous to that described for the preparation of 38, using compound 14, 3-cloropropionyl chloride, and diethylamine. Yield: 28%. M.p.: 128–130 °C (EtOAc). 1H NMR (600 MHz, CDCl3) δ (ppm): 9.66 (brs, 1H, D2O exch., NHCO), 8.51 (d, J = 8.9 Hz, 2H, H-3), 8.37 (brs, 1H, D2O exch., NHCH2CH2), 8.08 (d, J = 2.4 Hz, 1H, H-9), 7.27 (d, J = 9.7 Hz, 1H, H-6), 7.18 (dd, J = 9.7, 2.5 Hz, 1H, H-7), 6.30 (d, J = 11.9 Hz, 1H, H-2), 3.78 (s, 3H, OCH3), 3.40 (t, J = 4.1 Hz, 3H, NHCH2CH2), 3.12 (t, J = 6.8 Hz, 2H, COCH2CH2), 2.82–2.91 (m, 8H, NHCH2CH2N(CH2CH3)2), NHCH2CH2CH2, COCH2CH2), 2.73 (q, J = 7.1 Hz, 4H, COCH2CH2N(CH2CH3)2), 1.17 (t, J = 7.2 Hz, 6H, HNCH2CH2N(CH2CH3)2), 1.07 (t, J = 7.2 Hz, 6H, COCH2CH2N(CH2CH3)2). 13C NMR (151 MHz, CDCl3) δ (ppm): 168.4 (NHCO), 159.9 (CO), 148.9 (C-8), 146.2 (C-5a), 144.8 (C-4a), 139.9 (C-1), 131.6 (C-7), 126.9 (C-3), 126.0 (C-6), 121.5 (C-4), 105.2 (C-9), 102.7 (C-2), 101.8 (C-11a), 56.5 (OCH3), 51.0 (NHCH2CH2), 48.5 (COCH2CH2), 47.3 (COCH2CH2N(CH2CH3)2), 46.7 (NHCH2CH2N(CH2CH3)2), 40.4 (NHCH2CH2), 33.5 (COCH2CH2), 10.9 (COCH2CH2N(CH2CH3)2), 9.8 (NHCH2CH2CH2N(CH2CH3)2). m/z: calcd. for C26H39N6O3+: [M1 + H]+ = 483.3078, found 483.3085.
3-Dimethylamino-N-(1-((2-(dimethylamino)ethyl)amino)-8-methoxy-11-oxo-11H-pyrido[2,1-b]quinazolin-4-yl)propanamide (55)
This compound was synthesized using a procedure analogous to that described for the preparation of 38, using compound 15, 3-cloropropionyl chloride, and dimethylamine. Yield: 20%. M.p.: 202–204 °C (EtOAc). 1H NMR (600 MHz, CDCl3) δ (ppm): 10.33 (brs, 1H, D2O exch., NHCO), 8.72 (d, J = 8.8 Hz, 1H, H-3), 8.51 (t, J = 4.2 Hz, 1H, D2O exch., NHCH2CH2e), 8.25 (d, J = 2.5 Hz, 1H, H-9), 7.35 (d, J = 9.74 Hz, 1H, H-6), 7.29 (dd, J = 9.7, 2.6 Hz, 1H, H-7), 6.42 (d, J = 8.9 Hz, 1H, H-2), 3.88 (s, 3H, OCH3), 3.37 (q, J = 5.5 Hz, 2H, NHCH2CH2), 2.94 (t, J = 6.3 Hz, 2H, COCH2CH2), 2.77 (t, J = 6.4 Hz, 2H, NHCH2CH2), 2.72 (t, J = 6.3 Hz, 2H, COCH2CH2), 2.52 (s, 6H, HNCH2CH2N(CH3)2), 2.38 (s, 6H, COCH2CH2N(CH3)2). 13C NMR (151 MHz, CDCl3) δ (ppm): 169.0 (NHCO), 159.9 (CO), 148.6 (C-8), 146.3 (C-5a), 144.6 (C-4a), 139.5 (C-1), 131.3 (C-7), 126.9 (C-6), 126.1 (C-3), 121.5 (C-4), 105.2 (C-9), 102.8 (C-2), 101.6 (C-11a), 57.8 (NHCH2CH2), 56.4 (OCH3), 54.7 (COCH2CH2) 45.3 (COCH2CH2N(CH3)2) 44.6 (HNCH2CH2N(CH3)2) 40.8 (NHCH2CH2), 34.4 (COCH2CH2). m/z: calcd. for C22H31N6O3+: [M1 + H]+ = 427.2452, found 427.2457.
3-Diethylamino-N-(1-((3-(diethylamino)propyl)amino)-8-methoxy-11-oxo-11H-pyrido[2,1-b]quinazolin-4-yl)propanamide (56)
This compound was synthesized using a procedure analogous to that described for the preparation of 38, using compound 16, 3-cloropropionyl chloride, and dimethylamine. Yield: 10%. 1H NMR (600 MHz, CDCl3) δ (ppm): 10.26 (brs, 1H, D2O exch., NHCO), 8.78 (d, J = 8.9 Hz, 1H, H-3), 8.59 (brs, 1H, D2O exch., NHCH2CH2CH2), 8.22 (d, J = 2.56 Hz 1H, H-9), 7.37 (d, J = 9.7 Hz,1H, H-6), 7.31 (dd, J = 9.8, 2.6 Hz, 1H, H-7), 6.39 (d, J = 9.3 Hz, 1H, H-2), 6.43 (d, J = 8.9 Hz, 1H, H-2), 3.90 (s, 3H, OCH3), 3.35 (t, J = 6.6 Hz, 2H, NHCH2CH2CH2), 3.03 (t, J = 6.6 Hz, 2H, COCH2CH2), 2.82–2.93 (m, 10H, NHCH2CH2CH2, NHCH2CH2CH2N(CH2CH3)2, COCH2CH2N(CH2CH3)2), 2.77 (t, J = 6.6 Hz, 2H,COCH2CH2), 2.06 (quintet, J = 7.6 Hz, 2H, NHCH2CH2CH2), 1.20–1.24 (m, 12H, NHCH2CH2CH2N(CH2CH3)2, COCH2CH2N(CH2CH3)2). 13C NMR (151 MHz, CDCl3) δ (ppm): 169.5 (NHCO), 160.0 (CO), 148.7 (C-8), 146.1 (C-5a), 144.5 (C-4a), 139.5 (C-1), 131.3 (C-7), 126.2 (C-3), 126.8 (C-6), 121.8 (C-4), 104.9 (C-9), 102.8 (C-2), 101.6 (C-11a), 56.3 (OCH3), 49.5 (NHCH2CH2CH2), 48.5 (COCH2CH2), 46.4 (COCH2CH2N(CH2CH3)2), 46.4 (NHCH2CH2CH2N(CH2CH3)2), 41.1 (NHCH2CH2CH2), 34.1 (COCH2CH2), 24.4 (NHCH2CH2CH2), 10.5 (COCH2CH2N(CH2CH3)2), 9.9 (NHCH2CH2CH2N(CH2CH3)2). m/z: calcd. for C27H41N6O3+: [M1 + H]+ = 497.3235, found 497.3228.
3-Dimethylamino-N-(1-((3-(dimethylamino)propyl)amino)-8-methoxy-11-oxo-11H-pyrido[2,1-b]quinazolin-4-yl)propanamide (57)
This compound was synthesized using a procedure analogous to that described for the preparation of 38, using compound 17, 3-cloropropionyl chloride, and dimethylamine. M.p.: 178–180 °C (dec) (EtOAc). 1H NMR (400 MHz, CDCl3) δ (ppm): 10.34 (brs, 1H, D2O exch., NHCO), 8.64 (d, J = 8.9 Hz, 1H), 8.3 (t, J = 8.4 Hz 1H, D2O exch., NHCH2CH2CH2), 8.19 (s, J = 2.3 Hz, 1H, H-9), 7.34 (d, J = 9.8 Hz, 1H, H-6), 7.29 (dd, J = 9.8, 2.5 Hz, 1H, H-7), 6.41 (d, J = 8.9 Hz, 1H, H-3), 3.89 (s, 3H, OCH3), 3.31 (q, J = 7.2 Hz, 2H, NHCH2CH2CH2), 2.87 (t, J = 6.3 Hz, 2H, COCH2CH2), 2.67–2.72(m, 4H, NHCH2CH2CH2, COCH2CH2), 2.47 (s, 6H, NHCH2CH2CH2N(CH3)2), 2.43 (s, 6H, COCH2CH2N(CH3)2), 2.02 (quintet, J = 6.9 Hz, 2H, NHCH2CH2CH2). 13C NMR (151 MHz, CDCl3) δ (ppm): 169.9 (NHCO), 160.0 (CO), 148.6 (C-8), 146.3 (C-5a), 144.4 (C-4a), 139.4 (C-1), 131.1 (C-7), 126.9 (C-6), 126.3 (C-3), 121.7 (C-4), 104.9 (C-9), 103.0 (C-2), 101.6 (C-11a), 57.3 (NHCH2CH2CH2), 56.3 (OCH3), 55.2 (COCH2CH2), 45.1 (NHCH2CH2CH2N(CH3)2, COCH2CH2N(CH3)2) 41.3 (NHCH2CH2CH2), 34.9 (COCH2CH2), 26.6 (NHCH2CH2CH2). m/z: calcd. for C23H33N6O3+: [M1 + H]+ = 441.2609, found 441.2616.

3.3. Cell Lines—Growth Conditions—Cytotoxicity Assays

The T24 human urinary/urothelial bladder cancer cell line (major mutation signature: H-RASG12V; p53ΔY126) was provided by ATCC-LGC Standards GmbH (Wesel, Germany), and the WM266-4 human metastatic melanoma (skin cancer) cell line (major mutation signature: B-RAFV600D) was purchased from ECACC-Sigma-Aldrich (St. Louis, MO, USA). Cells were cultured and exponentially grown in a complete 1x DMEM medium supplemented with 10% (heat-inactivated) FBS in a 5% CO2 environment and at +37 °C. For the MTT cytotoxicity assay, cells were seeded onto 48-well plates at approximately 90% confluency and subsequently treated with different doses of the four compounds (11, 15, 35, and 39) for 24 h. Next, the cells were incubated with MTT solution for 4 h, and the formazan crystals produced were carefully dissolved in isopropanol. Spectrophotometric absorbance was measured using a Dynatech MR5000 Elisa microtiter-plate reader (Dynatech Laboratories, Chantilly, VA, USA) at 550 nm, using 630 nm as the reference wavelength. Each MTT assay was performed in triplicate, using three wells per tested compound and cell line. All four compounds were dissolved in high-grade DMSO. The statistical significance of the differences observed in the compound-treated versus control (DMSO) cell survival values was determined using an unpaired two-sided Student’s t-test. Data are reported as mean ± SD (standard deviation) of the mean value. p < 0.001 was considered statistically significant.

3.4. Hydrolysis Study Experimental

3.4.1. Samples Preparation

Each compound (10 mg) was weighed in a 10 mL volumetric flask, diluted with LC-MS grade acetonitrile, and stored at −20 °C in amber glass vials (concentration 1000 mg L−1). Intermediate working solutions of 5.0–6.25–7.5–8.75–10.0–12.5–15.0 mg L−1 were prepared by appropriate dilutions of the stock solutions in ultrapure water.

3.4.2. Instrumental Analysis

The analysis was performed using a UV spectrometer (SHIMADZU UV-1800, Shimadzu Corporation, Kyoto, Japan) equipped with a 150W Xenon lamp. The spectra were obtained from 200–500 nm in the scan mode using a spectral resolution of 1 nm, whereas the validation was performed using the photometry mode.

3.4.3. Validation of the Analytical Method

A six-point calibration curve was constructed by preparing working solutions of the investigated compounds at various concentrations (xx mg L−1) to examine the linear range. Furthermore, the precision of the method (repeatability and intermediate precision) was assessed. Statistical calculations were performed using Microsoft Excel 365.

3.4.4. Kinetic Study

The spectra of the compounds were obtained at the optimum λmax at different time points to investigate the extent of hydrolysis. Specifically, the spectra were obtained at the following time points: t = 0, 5, 10, 20, 60, 90, and 120 min, based on the estimated t1/2 of the compounds.

3.5. Computational Chemistry

The molecules were drawn, displayed, and characterized using Marvin Sketch software (Marvin 24.3.0, 2024, ChemAxon (http://www.chemaxon.com)) and optimized using the Gaussian09 computational chemistry package [39]. The 6-31G basis set was employed using the B3LYP approximation using DFT calculations for the geometry optimization of the two molecules at the ground state, and a full NBO analysis was also carried out. The results were also punched to the corresponding wfn files using the output=wfn additional command and pop=(3/33=4) for executing the population analysis. Electronic density post-processing was performed using the MultiWFN program [40,41], using topology, fuzzy atomic space, basin analysis, electron delocalization, and aromaticity analyses. The FUKUI functions were calculated using the UCA-FUKUI v.2 software [42]. All simple arithmetic analyses were performed using Microsoft Excel 365.

4. Conclusions

In summary, we designed and synthesized a series of novel amino-substituted aza-acridines and evaluated their in vitro anticancer properties. Among these, compounds 11 and 15 exhibited low to moderate cytotoxic activity, whereas compounds 35 and 39 demonstrated more pronounced effects against WM266-4 metastatic melanoma cells but not against T24 bladder cancer cells. While these findings indicate a degree of selectivity toward melanoma cells, further investigation is needed to assess their stability, mechanism of action and potential relevance in more advanced biological models.
To better understand the observed activity profile, we focused on the stability of the compounds, given previous evidence from our group indicating that the aza-acridine core is prone to hydrolysis. To explore this, we selected compounds 25 and 29, which differ by a methoxy substituent at position 2 of the core, and examined them using mass spectrometry and DFT-based computational analysis. Both compounds were highly stable under the experimental conditions, underscoring the influence of core substitution on chemical stability. This combined experimental and theoretical approach offers valuable insights into the behavior of these analogs and could guide the future design of more stable and potent aza-acridine derivatives.

Supplementary Materials

The following supporting information can be downloaded at: https://www.mdpi.com/article/10.3390/molecules30122612/s1, Table S1: Linearity results of the investigated compounds; Table S2: Repeatability results for the compound 16; Table S3: Repeatability results for the compound 17; Table S4: ELF LOL: ELF (Electron Localization Function) and LOL (Localized Orbital Locator) values of selected CPs of 1A and 9A along with their corresponding differences; Figure S1: Determination of IC50 values using MTT assay; Figure S2: Absorbance spectrum of the compound 16; Figure S3: Absorbance spectrum of the compound 17; Figure S4: CPs numbering of the 1A (A) and 9A(B) molecules as shown in Fig S ELFLOL; Figures S5–S48: 1H and 13C-NMR spectra of compounds.

Author Contributions

Methodology, M.K., E.C., A.P., and A.F.G.; formal analysis, M.K., E.C., A.P., and A.F.G.; writing—original draft preparation, M.K., E.C., A.P., and A.F.G. writing—review and editing, I.K.K., D.J.S. and E.G.; conceptualization, I.K.K., D.J.S. and E.G. All authors have read and agreed to the published version of the manuscript.

Funding

This research received no external funding.

Institutional Review Board Statement

Not applicable.

Informed Consent Statement

Not applicable.

Data Availability Statement

All data are available in this publication and Supplementary Materials.

Conflicts of Interest

The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this article.

References

  1. Chiron, J.; Galy, J.-P. Reactivity of the Acridine Ring: A Review. Synthesis 2004, 2004, 313–325. [Google Scholar] [CrossRef]
  2. Schmidt, A.; Liu, M. Chapter Four—Recent Advances in the Chemistry of Acridines. In Advances in Heterocyclic Chemistry; Scriven, E.F.V., Ramsden, C.A., Eds.; Advances in Heterocyclic Chemistry; Academic Press: Cambridge, MA, USA, 2015; Volume 115, pp. 287–353. [Google Scholar]
  3. Gensicka-Kowalewska, M.; Cholewiński, G.; Dzierzbicka, K. Recent Developments in the Synthesis and Biological Activity of Acridine/Acridone Analogues. RSC Adv. 2017, 7, 15776–15804. [Google Scholar] [CrossRef]
  4. Nowak, K. Chemical Structures and Biological Activities of Bis- and Tetrakis-Acridine Derivatives: A Review. J. Mol. Struct. 2017, 1146, 562–570. [Google Scholar] [CrossRef]
  5. Cholody, W.M.; Martelli, S.; Paradziej-Lukowicz, J.; Konopa, J. 5-[(Aminoalkyl)Amino]Imidazo[4,5,1-de]Acridin-6-Ones as a Novel Class of Antineoplastic Agents. Synthesis and Biological Activity. J. Med. Chem. 1990, 33, 49–52. [Google Scholar] [CrossRef]
  6. Varakumar, P.; Rajagopal, K.; Aparna, B.; Raman, K.; Byran, G.; Gonçalves Lima, C.M.; Rashid, S.; Nafady, M.H.; Emran, T.B.; Wybraniec, S. Acridine as an Anti-Tumour Agent: A Critical Review. Molecules 2023, 28, 193. [Google Scholar] [CrossRef]
  7. Chen, Y.-L.; Lu, C.-M.; Chen, I.-L.; Tsao, L.-T.; Wang, J.-P. Synthesis and Antiinflammatory Evaluation of 9-Anilinoacridine and 9-Phenoxyacridine Derivatives. J. Med. Chem. 2002, 45, 4689–4694. [Google Scholar] [CrossRef]
  8. Tonelli, M.; Vettoretti, G.; Tasso, B.; Novelli, F.; Boido, V.; Sparatore, F.; Busonera, B.; Ouhtit, A.; Farci, P.; Blois, S.; et al. Acridine Derivatives as Anti-BVDV Agents. Antivir. Res. 2011, 91, 133–141. [Google Scholar] [CrossRef]
  9. Yu, X.-M.; Ramiandrasoa, F.; Guetzoyan, L.; Pradines, B.; Quintino, E.; Gadelle, D.; Forterre, P.; Cresteil, T.; Mahy, J.-P.; Pethe, S. Synthesis and Biological Evaluation of Acridine Derivatives as Antimalarial Agents. ChemMedChem 2012, 7, 587–605. [Google Scholar] [CrossRef]
  10. Fonte, M.; Tassi, N.; Gomes, P.; Teixeira, C. Acridine-Based Antimalarials—From the Very First Synthetic Antimalarial to Recent Developments. Molecules 2021, 26, 600. [Google Scholar] [CrossRef]
  11. Caffrey, C.R.; Steverding, D.; Swenerton, R.K.; Kelly, B.; Walshe, D.; Debnath, A.; Zhou, Y.-M.; Doyle, P.S.; Fafarman, A.T.; Zorn, J.A.; et al. Bis-Acridines as Lead Antiparasitic Agents: Structure-Activity Analysis of a Discrete Compound Library In Vitro. Antimicrob. Agents Chemother. 2007, 51, 2164–2172. [Google Scholar] [CrossRef]
  12. Belmont, P.; Bosson, J.; Godet, T.; Tiano, M. Acridine and Acridone Derivatives, Anticancer Properties and Synthetic Methods: Where Are We Now? Anticancer Agents Med. Chem. 2007, 7, 139–169. [Google Scholar] [CrossRef] [PubMed]
  13. Kozurkova, M. Acridine Derivatives as Inhibitors/Poisons of Topoisomerase II. J. Appl. Toxicol. 2022, 42, 544–552. [Google Scholar] [CrossRef] [PubMed]
  14. Leonel Silva Sousa, G.; da Silva Honório, T.; de Souza Furtado, P.; Simon, A.; Mendes Cabral, L.; Rodrigues Coutinho Pereira, G.; Emanuel Ferreira Alves, J.; Mônica Vitalino de Almeida, S.; Rodrigues Silva, V.; de Souza Santos, L.; et al. Design, Synthesis and Antiproliferative Evaluation of New Acridine-Thiosemicarbazone Derivatives as Topoisomerase IIα Inhibitors. Results Chem. 2024, 7, 101371. [Google Scholar] [CrossRef]
  15. Collie, G.W.; Sparapani, S.; Parkinson, G.N.; Neidle, S. Structural Basis of Telomeric RNA Quadruplex−Acridine Ligand Recognition. J. Am. Chem. Soc. 2011, 133, 2721–2728. [Google Scholar] [CrossRef]
  16. Gunaratnam, M.; Greciano, O.; Martins, C.; Reszka, A.P.; Schultes, C.M.; Morjani, H.; Riou, J.-F.; Neidle, S. Mechanism of Acridine-Based Telomerase Inhibition and Telomere Shortening. Biochem. Pharmacol. 2007, 74, 679–689. [Google Scholar] [CrossRef]
  17. Sondhi, S.; Bhattacharjee, G.; Jameel, R.; Shukla, R.; Raghubir, R.; Lozach, O.; Meijer, L. Antiinflammatory, Analgesic and Kinase Inhibition Activities of Some Acridine Derivatives. Open Chem. 2004, 2, 1–15. [Google Scholar] [CrossRef]
  18. Adjei, A.A. Current Status of Pyrazoloacridine as an Anticancer Agent. Investig. New Drugs 1999, 17, 43–48. [Google Scholar] [CrossRef] [PubMed]
  19. Hu, Y.; Krishan, A.; Nie, W.; Sridhar, K.S.; Mayer, L.D.; Bally, M. Synergistic Cytotoxicity of Pyrazoloacridine with Doxorubicin, Etoposide, and Topotecan in Drug-Resistant Tumor Cells. Clin. Cancer Res. 2004, 10, 1160–1169. [Google Scholar] [CrossRef]
  20. Antonini, I.; Polucci, P.; Magnano, A.; Sparapani, S.; Martelli, S. Rational Design, Synthesis, and Biological Evaluation of Bis(Pyrimido[5,6,1-de]Acridines) and Bis(Pyrazolo[3,4,5-Kl]Acridine-5-Carboxamides) as New Anticancer Agents. J. Med. Chem. 2004, 47, 5244–5250. [Google Scholar] [CrossRef]
  21. Kostakis, I.K.; Magiatis, P.; Pouli, N.; Marakos, P.; Skaltsounis, A.-L.; Pratsinis, H.; Léonce, S.; Pierré, A. Design, Synthesis, and Antiproliferative Activity of Some New Pyrazole-Fused Amino Derivatives of the Pyranoxanthenone, Pyranothioxanthenone, and Pyranoacridone Ring Systems:  A New Class of Cytotoxic Agents. J. Med. Chem. 2002, 45, 2599–2609. [Google Scholar] [CrossRef]
  22. Huo, L.; Liu, X.; Jaiswal, Y.; Xu, H.; Chen, R.; Lu, R.; Nong, Y.; Williams, L.; Liang, Y.; Jia, Z. Design and Synthesis of Acridine-Triazole and Acridine-Thiadiazole Derivatives and Their Inhibitory Effect against Cancer Cells. Int. J. Mol. Sci. 2023, 24, 64. [Google Scholar] [CrossRef] [PubMed]
  23. Lemke, K.; Wojciechowski, M.; Laine, W.; Bailly, C.; Colson, P.; Baginski, M.; Larsen, A.K.; Skladanowski, A. Induction of Unique Structural Changes in Guanine-Rich DNA Regions by the Triazoloacridone C-1305, a Topoisomerase II Inhibitor with Antitumor Activities. Nucleic Acids Res. 2005, 33, 6034–6047. [Google Scholar] [CrossRef] [PubMed]
  24. Veligeti, R.; Madhu, R.B.; Anireddy, J.; Pasupuleti, V.R.; Avula, V.K.R.; Ethiraj, K.S.; Uppalanchi, S.; Kasturi, S.; Perumal, Y.; Anantaraju, H.S.; et al. Synthesis of Novel Cytotoxic Tetracyclic Acridone Derivatives and Study of Their Molecular Docking, ADMET, QSAR, Bioactivity and Protein Binding Properties. Sci. Rep. 2020, 10, 20720. [Google Scholar] [CrossRef]
  25. Giannouli, V.; Kostakis, I.K.; Pouli, N.; Marakos, P.; Samara, P.; Tsitsilonis, O. Synthesis and Antiproliferative Activity of Some Novel Benzo-Fused Imidazo[1,8]Naphthyridinones. Bioorganic Med. Chem. Lett. 2015, 25, 2621–2623. [Google Scholar] [CrossRef]
  26. Karelou, M.; Kourafalos, V.; Tragomalou, A.P.; Marakos, P.; Pouli, N.; Tsitsilonis, O.E.; Gikas, E.; Kostakis, I.K. Synthesis, Biological Evaluation and Stability Studies of Some Novel Aza-Acridine Aminoderivatives. Molecules 2020, 25, 4584. [Google Scholar] [CrossRef]
  27. Princiotto, S.; Karelou, M.; Ioannidi, R.; Beretta, G.L.; Zaffaroni, N.; Artali, R.; Kostakis, I.K.; Mazzini, S.; Dallavalle, S. Exploring the Interaction of New Pyridoquinazoline Derivatives with G-Quadruplex in the c-MYC Promoter Region. Int. J. Mol. Sci. 2023, 24, 14346. [Google Scholar] [CrossRef] [PubMed]
  28. Georgakopoulos, A.; Kalampaliki, A.D.; Gioti, K.; Hamdoun, S.; Giannopoulou, A.F.; Efferth, T.; Stravopodis, D.J.; Tenta, R.; Marakos, P.; Pouli, N.; et al. Synthesis of Novel Xanthone and Acridone Carboxamides with Potent Antiproliferative Activities. Arab. J. Chem. 2020, 13, 7953–7969. [Google Scholar] [CrossRef]
  29. Pacheco-Benichou, A.; Ivendengani, E.; Kostakis, I.K.; Besson, T.; Fruit, C. Copper-Catalyzed C–H Arylation of Fused-Pyrimidinone Derivatives Using Diaryliodonium Salts. Catalysts 2021, 11, 28. [Google Scholar] [CrossRef]
  30. Konstantakou, E.G.; Voutsinas, G.E.; Karkoulis, P.K.; Aravantinos, G.; Margaritis, L.H.; Stravopodis, D.J. Human Bladder Cancer Cells Undergo Cisplatin-Induced Apoptosis That Is Associated with P53-Dependent and P53-Independent Responses. Int. J. Oncol. 2009, 35, 401–416. [Google Scholar] [CrossRef]
  31. Stravopodis, D.J.; Karkoulis, P.K.; Konstantakou, E.G.; Melachroinou, S.; Thanasopoulou, A.; Aravantinos, G.; Margaritis, L.H.; Anastasiadou, E.; Voutsinas, G.E. Thymidylate Synthase Inhibition Induces P53-Dependent and P53-Independent Apoptotic Responses in Human Urinary Bladder Cancer Cells. J. Cancer Res. Clin. Oncol. 2011, 137, 359–374. [Google Scholar] [CrossRef]
  32. Konstantakou, E.G.; Voutsinas, G.E.; Velentzas, A.D.; Basogianni, A.-S.; Paronis, E.; Balafas, E.; Kostomitsopoulos, N.; Syrigos, K.N.; Anastasiadou, E.; Stravopodis, D.J. 3-BrPA Eliminates Human Bladder Cancer Cells with Highly Oncogenic Signatures via Engagement of Specific Death Programs and Perturbation of Multiple Signaling and Metabolic Determinants. Mol. Cancer 2015, 14, 135. [Google Scholar] [CrossRef] [PubMed]
  33. Iliou, A.; Panagiotakis, A.; Giannopoulou, A.F.; Benaki, D.; Kosmopoulou, M.; Velentzas, A.D.; Tsitsilonis, O.E.; Papassideri, I.S.; Voutsinas, G.E.; Konstantakou, E.G.; et al. Malignancy Grade-Dependent Mapping of Metabolic Landscapes in Human Urothelial Bladder Cancer: Identification of Novel, Diagnostic, and Druggable Biomarkers. Int. J. Mol. Sci. 2020, 21, 1892. [Google Scholar] [CrossRef] [PubMed]
  34. Konstantakou, E.G.; Velentzas, A.D.; Anagnostopoulos, A.K.; Giannopoulou, A.F.; Anastasiadou, E.; Papassideri, I.S.; Voutsinas, G.E.; Tsangaris, G.T.; Stravopodis, D.J. Unraveling the Human Protein Atlas of Metastatic Melanoma in the Course of Ultraviolet Radiation-Derived Photo-Therapy. J. Proteom. 2018, 188, 119–138. [Google Scholar] [CrossRef]
  35. Giannopoulou, A.F.; Konstantakou, E.G.; Velentzas, A.D.; Avgeris, S.N.; Avgeris, M.; Papandreou, N.C.; Zoi, I.; Filippa, V.; Katarachia, S.; Lampidonis, A.D.; et al. Gene-Specific Intron Retention Serves as Molecular Signature That Distinguishes Melanoma from Non-Melanoma Cancer Cells in Greek Patients. Int. J. Mol. Sci. 2019, 20, 937. [Google Scholar] [CrossRef]
  36. Kosmopoulou, M.; Giannopoulou, A.F.; Iliou, A.; Benaki, D.; Panagiotakis, A.; Velentzas, A.D.; Konstantakou, E.G.; Papassideri, I.S.; Mikros, E.; Stravopodis, D.J.; et al. Human Melanoma-Cell Metabolic Profiling: Identification of Novel Biomarkers Indicating Metastasis. Int. J. Mol. Sci. 2020, 21, 2436. [Google Scholar] [CrossRef] [PubMed]
  37. Konstantakou, E.G.; Velentzas, A.D.; Anagnostopoulos, A.K.; Litou, Z.I.; Konstandi, O.A.; Giannopoulou, A.F.; Anastasiadou, E.; Voutsinas, G.E.; Tsangaris, G.T.; Stravopodis, D.J. Deep-Proteome Mapping of WM-266-4 Human Metastatic Melanoma Cells: From Oncogenic Addiction to Druggable Targets. PLoS ONE 2017, 12, e0171512. [Google Scholar] [CrossRef]
  38. Arafeh, R.; Shibue, T.; Dempster, J.M.; Hahn, W.C.; Vazquez, F. The Present and Future of the Cancer Dependency Map. Nat. Rev. Cancer 2025, 25, 59–73. [Google Scholar] [CrossRef]
  39. Gaussian 09, Revision A.02—ScienceOpen. Available online: https://www.scienceopen.com/document?vid=6be7271f-f651-464b-aee6-ef20b0743b6b (accessed on 14 May 2025).
  40. Lu, T.; Chen, F. Multiwfn: A Multifunctional Wavefunction Analyzer. J. Comput. Chem. 2012, 33, 580–592. [Google Scholar] [CrossRef]
  41. Lu, T. A Comprehensive Electron Wavefunction Analysis Toolbox for Chemists, Multiwfn. J. Chem. Phys. 2024, 161, 082503. [Google Scholar] [CrossRef]
  42. Sánchez-Márquez, J.; Zorrilla, D.; Sánchez-Coronilla, A.; de los Santos, D.M.; Navas, J.; Fernández-Lorenzo, C.; Alcántara, R.; Martín-Calleja, J. Introducing “UCA-FUKUI” Software: Reactivity-Index Calculations. J. Mol. Model. 2014, 20, 2492. [Google Scholar] [CrossRef]
Figure 1. Representative compounds illustrating key structural features and those prepared by our group. Color coding highlights: 7-methoxy group (blue), nitro group (red), basic side chains (green), and fused pyrazole ring (purple).
Figure 1. Representative compounds illustrating key structural features and those prepared by our group. Color coding highlights: 7-methoxy group (blue), nitro group (red), basic side chains (green), and fused pyrazole ring (purple).
Molecules 30 02612 g001
Scheme 1. Hydrolysis of the compounds.
Scheme 1. Hydrolysis of the compounds.
Molecules 30 02612 sch001
Scheme 2. Reagents and conditions: (a) KIO4, I2, glacial acetic acid, H2O, H2SO4, 80 °C, 5 h, (b) Cs2CO3, CuI, 1,10-phenanthroline, MeOH, 120 °C, 12 h, (c) fuming HNO3, H2SO4, r.t, 1 h, (d) NaH 60% in mineral oil, dry DMF, 50 °C, 24 h, (e) PPA, 100 °C, 2 h, (f) suitable amine, THF, reflux, 12 h.
Scheme 2. Reagents and conditions: (a) KIO4, I2, glacial acetic acid, H2O, H2SO4, 80 °C, 5 h, (b) Cs2CO3, CuI, 1,10-phenanthroline, MeOH, 120 °C, 12 h, (c) fuming HNO3, H2SO4, r.t, 1 h, (d) NaH 60% in mineral oil, dry DMF, 50 °C, 24 h, (e) PPA, 100 °C, 2 h, (f) suitable amine, THF, reflux, 12 h.
Molecules 30 02612 sch002
Scheme 3. Reagents and conditions: (a) HCOONH4, Pd/C 10%, MeOH, 70 °C, 150 W, 2 min 1821 or HCOONH4, Zn, MeOH, r.t., 60 min 2225, (b) ClCOCH2Cl, Na2CO3, THF, r.t., 15 min, (d) ClCOCH2CH2Cl, Na2CO3, THF, r.t., 15 min, (c) HNR1R2, EtOH, reflux 48–72 h.
Scheme 3. Reagents and conditions: (a) HCOONH4, Pd/C 10%, MeOH, 70 °C, 150 W, 2 min 1821 or HCOONH4, Zn, MeOH, r.t., 60 min 2225, (b) ClCOCH2Cl, Na2CO3, THF, r.t., 15 min, (d) ClCOCH2CH2Cl, Na2CO3, THF, r.t., 15 min, (c) HNR1R2, EtOH, reflux 48–72 h.
Molecules 30 02612 sch003
Figure 2. Metastatic melanoma, but not bladder cancer, cells undergo compound-specific annihilation of their survival and growth in a dose-dependent manner. MTT-based cytotoxicity assays of T24 (left-column panels) and WM266-4 (right-column panels) cells, grown at ~90% confluency under standard conditions and treated with the indicated doses (0, 10, 50, and 100 μM) of compounds 11 (top panels), 15 (second from the top panels), 39 (second from the bottom panels), and 35 (bottom panels) (all dissolved in high-grade DMSO), for 24 h. Note the striking anticancer activity (cell viability annihilation) of compound 35, at the 100 μM concentration, against WM266-4 (human metastatic melanoma) but not against T24 (human urothelial bladder cancer) cells. Results are reported as mean ± standard deviation of triplicates of at least three independent experiments (p < 0.001). Statistical analysis: Statistical analyses were performed using the GraphPad Prism 9 software. Normality and lognormality of the data were assessed using the Shapiro-Wilk test, while heteroscedasticity was evaluated using the Brown-Forsythe test. Depending on the distribution, the results were analyzed using either a one-way ANOVA with Tukey’s multiple comparisons test or the Kruskal-Wallis test. Data are presented as mean ± standard deviation (SD), with n = 3. A p-value of less than 0.05 was considered statistically significant.
Figure 2. Metastatic melanoma, but not bladder cancer, cells undergo compound-specific annihilation of their survival and growth in a dose-dependent manner. MTT-based cytotoxicity assays of T24 (left-column panels) and WM266-4 (right-column panels) cells, grown at ~90% confluency under standard conditions and treated with the indicated doses (0, 10, 50, and 100 μM) of compounds 11 (top panels), 15 (second from the top panels), 39 (second from the bottom panels), and 35 (bottom panels) (all dissolved in high-grade DMSO), for 24 h. Note the striking anticancer activity (cell viability annihilation) of compound 35, at the 100 μM concentration, against WM266-4 (human metastatic melanoma) but not against T24 (human urothelial bladder cancer) cells. Results are reported as mean ± standard deviation of triplicates of at least three independent experiments (p < 0.001). Statistical analysis: Statistical analyses were performed using the GraphPad Prism 9 software. Normality and lognormality of the data were assessed using the Shapiro-Wilk test, while heteroscedasticity was evaluated using the Brown-Forsythe test. Depending on the distribution, the results were analyzed using either a one-way ANOVA with Tukey’s multiple comparisons test or the Kruskal-Wallis test. Data are presented as mean ± standard deviation (SD), with n = 3. A p-value of less than 0.05 was considered statistically significant.
Molecules 30 02612 g002
Figure 3. Structures of the investigated compounds: (a) 1A _and (b) 9A.
Figure 3. Structures of the investigated compounds: (a) 1A _and (b) 9A.
Molecules 30 02612 g003
Figure 4. Structure of the 1A analog along ( numbering is arbitrary). The highlighted red bonds are those that are subtracted from the 1A derivative compared to 9A, whereas the blue-colored bond is elongated. The angle is subtracted, whereas the dihedral angles are contracted toward planarity.
Figure 4. Structure of the 1A analog along ( numbering is arbitrary). The highlighted red bonds are those that are subtracted from the 1A derivative compared to 9A, whereas the blue-colored bond is elongated. The angle is subtracted, whereas the dihedral angles are contracted toward planarity.
Molecules 30 02612 g004
Figure 5. The ELF (Electron Localization Function) and LOL (Localized Orbital Locator) functions of the 1A and 9A molecules. Panels (A,B) correspond to the ELF function of the 1A derivative, and panels (E) correspond to those of the 9A derivative. Panels (C,D) correspond to the LOL function of the 1A derivative, and panels (G,H) correspond to the function of the 9A derivative. Panels (B,D,F,H) focus only on the three atoms of the amide bond.
Figure 5. The ELF (Electron Localization Function) and LOL (Localized Orbital Locator) functions of the 1A and 9A molecules. Panels (A,B) correspond to the ELF function of the 1A derivative, and panels (E) correspond to those of the 9A derivative. Panels (C,D) correspond to the LOL function of the 1A derivative, and panels (G,H) correspond to the function of the 9A derivative. Panels (B,D,F,H) focus only on the three atoms of the amide bond.
Molecules 30 02612 g005
Table 1. The angles and dihedral angles of molecules 1A and 9A, along with their corresponding differences from their theoretical values.
Table 1. The angles and dihedral angles of molecules 1A and 9A, along with their corresponding differences from their theoretical values.
Angles Difference from
the theoretical 120°
1A 9A1A9A
C7-N3-C6120.31C6-N7-C26118.52−0.311.48
C7-N3-C1118.04C6-N7-C8120.791.96−0.79
C6-N3-C1121.64C26-N7-C8120.67−1.64−0.67
C8-C7-N3115.99C23-C6-N7116.744.013.26
C8-C7-O18126.22C23-C5-O14122.17−6.22−2.17
N3-C7-O18117.78N7-C6-O14121.062.22−1.06
C11-C8-C7119.84C1-C23-C6119.940.160.06
C11-C8-C10120.65C1-C23-C5120.21−0.65−0.21
C7-C8-C10119.49C3-C2-C5119.910.510.09
Difference from
the theoretical 180°
C11-C8-C7-N3−178.52C1-C23-C6-N7−179.451.480.55
C8-C7-N3-C1−179.83C23-C6-N7-C8−177.160.172.84
Table 2. Selected bond lengths of the 1A and 9A derivatives along with their highest differences. The bond lengths contracted by 1A compared to 9A are highlighted in red, whereas the opposite phenomenon is highlighted in green.
Table 2. Selected bond lengths of the 1A and 9A derivatives along with their highest differences. The bond lengths contracted by 1A compared to 9A are highlighted in red, whereas the opposite phenomenon is highlighted in green.
1A9A
NumberBond LengthNumberBond LengthΔBond (1A–9A)
N3-C71.435N7-C61.446−0.011
C7-O181.264C6-O141.2610.003
C8-C71.438C23-C61.445−0.007
C10-C81.437C5-C231.4150.022
C10-N91.369C5-N251.374−0.005
N9-C61.321N25-C261.3070.014
C6-N31.412C26-N71.466−0.054
N3-C11.392N7-C81.415−0.023
C8-C111.44C23-C11.4130.027
C1-C21.362C8-C91.397−0.035
C2-C41.431C9-C241.3890.042
C4-C51.368C24-C101.391−0.023
C5-C61.432C10-C261.437−0.005
C6-N91.321C26-N251.3070.014
C10-C131.42C5-C41.4130.007
C13-C141.399C4-C31.3860.013
C14-C121.384C3-C21.416−0.032
C12-C111.413C2-C11.3850.028
Table 3. Aromaticity indices of the 1A and 9C derivatives, along with their corresponding differences. (Harmonic Oscillator Model of Aromaticity), PDI: Para-Delocalization Index, FLU: Aromatic Fluctuation Index, HOMA: Harmonic Oscillator Model of Aromaticity).
Table 3. Aromaticity indices of the 1A and 9C derivatives, along with their corresponding differences. (Harmonic Oscillator Model of Aromaticity), PDI: Para-Delocalization Index, FLU: Aromatic Fluctuation Index, HOMA: Harmonic Oscillator Model of Aromaticity).
1A9ADifference
Aromaticity IndexRing BRing ARing CRing BRing ARing CRing BRing ARing C
PDI0.03660.05470.06290.03440.07920.04250.0022−0.02450.0204
FLU0.04440.01780.03090.05260.00930.0375−0.00820.0085−0.0066
Shannon aromaticity0.70690.67620.69720.70700.67600.6976−0.00010.0003−0.0004
HOMA0.51200.70400.64000.33000.88100.51900.1820−0.17700.1210
Disclaimer/Publisher’s Note: The statements, opinions and data contained in all publications are solely those of the individual author(s) and contributor(s) and not of MDPI and/or the editor(s). MDPI and/or the editor(s) disclaim responsibility for any injury to people or property resulting from any ideas, methods, instructions or products referred to in the content.

Share and Cite

MDPI and ACS Style

Karelou, M.; Panara, A.; Chatziorfanou, E.; Giannopoulou, A.F.; Stravopodis, D.J.; Gikas, E.; Kostakis, I.K. Synthesis, Stability, and Biological Evaluation of Novel Aminoderivatives Incorporating the Aza-Acridine Scaffold. Molecules 2025, 30, 2612. https://doi.org/10.3390/molecules30122612

AMA Style

Karelou M, Panara A, Chatziorfanou E, Giannopoulou AF, Stravopodis DJ, Gikas E, Kostakis IK. Synthesis, Stability, and Biological Evaluation of Novel Aminoderivatives Incorporating the Aza-Acridine Scaffold. Molecules. 2025; 30(12):2612. https://doi.org/10.3390/molecules30122612

Chicago/Turabian Style

Karelou, Maria, Anthi Panara, Eleftheria Chatziorfanou, Aikaterini F. Giannopoulou, Dimitrios J. Stravopodis, Evagelos Gikas, and Ioannis K. Kostakis. 2025. "Synthesis, Stability, and Biological Evaluation of Novel Aminoderivatives Incorporating the Aza-Acridine Scaffold" Molecules 30, no. 12: 2612. https://doi.org/10.3390/molecules30122612

APA Style

Karelou, M., Panara, A., Chatziorfanou, E., Giannopoulou, A. F., Stravopodis, D. J., Gikas, E., & Kostakis, I. K. (2025). Synthesis, Stability, and Biological Evaluation of Novel Aminoderivatives Incorporating the Aza-Acridine Scaffold. Molecules, 30(12), 2612. https://doi.org/10.3390/molecules30122612

Article Metrics

Back to TopTop