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Article

The Synthesis, Fungicidal Activity, and in Silico Study of Alkoxy Analogues of Natural Precocenes I, II, and III

by
Khaled M. A. Ramadan
1,2,*,
Hossam S. El-Beltagi
3,4,*,
Zafar Iqbal
1 and
Eslam S. A. Bendary
2
1
Central Laboratories, King Faisal University, Al-Ahsa 31982, Saudi Arabia
2
Biochemistry Department, Faculty of Agriculture, Ain Shams University, Cairo 11241, Egypt
3
Agricultural Biotechnology Department, College of Agriculture and Food Sciences, King Faisal University, Al-Ahsa 31982, Saudi Arabia
4
Biochemistry Department, Faculty of Agriculture, Cairo University, Giza 12613, Egypt
*
Authors to whom correspondence should be addressed.
Molecules 2022, 27(21), 7177; https://doi.org/10.3390/molecules27217177
Submission received: 10 September 2022 / Revised: 15 October 2022 / Accepted: 18 October 2022 / Published: 24 October 2022

Abstract

:
This study aimed to synthesize, characterize, and explore the eco-friendly and antifungal potential of precocenes and their derivatives. The organic synthesis of the mono-O-alkyl-2,2-dimethyl 2H-1-chromene series, including the natural product precocene I, and the di-O-alkyl 2,2-dimethyl-2H-1-chromene series, including the natural 2H-1-chromenes precocenes II and III, was achieved. The synthetic compounds were subjected to spectroscopic analysis, 1HNMR,13CNMR, and mass characterization. The antifungal activity of synthesized precocenes I, II, and III, as well as their synthetic intermediates, was evaluated by the poison food technique. Precocene II (EC50 106.8 µg × mL−1 and 4.94 µg mL−1), and its regioisomers 7a (EC50 97.18 µg × mL−1 and 35.30 µg × mL−1) and 7d (EC50 170.58 × µg mL−1), exhibited strong fungitoxic activity against Aspergillus niger and Rhizoctonia solani. Some of the novel chromenes, 11a and 11b, which had never been evaluated before, yielded stronger fungitoxic effects. Finally, docking simulations for compounds with promising fungitoxic activity were subjected to structure–activity relationship analyses against the polygalactouronases and voltage-dependent anion channels. Conclusively, precocenes and their regioisomers demonstrated promising fungitoxic activity; such compounds can be subjected to minor structural modifications to yield promising and novel fungicides.

1. Introduction

The problems associated with excessive pesticide use, particularly in developing countries such as Egypt, have prompted scientists to investigate eco-friendly and novel methods of plant protection. Secondary metabolites of higher plants, insects, and animals have been investigated as potential natural fungitoxicants for plant disease management. These natural chemicals are physiologically active and are produced to aid in pathogen defense, interspecies competition, and reproductive process facilitation. The biological activity of natural products against phytophagous insects, such as pesticides and crop protection compounds, has gained significant attention over the last couple of decades. Natural products are now considered as promising alternatives to the current arsenal of synthetic compounds [1]. The heterocyclic benzopyran skeleton containing oxygen, particularly its structural derivatives such as precocenes I, II, and III, constitutes a privileged group of compounds. These compounds are found in a wide range of phytochemical classes of natural products [2,3,4,5,6]. These compounds have excellent and broad-spectrum antibacterial, antifungal, antiviral, and insecticidal activities. Additionally, they have pharmacological properties, such as anti-inflammatory, anticancer, and antioxidant activities [7,8].
Phytopathogenic fungi, Rhizoctonia solani, and Aspergillus niger, especially the former, have long been recognized as a major threat to agricultural production around the globe, causing massive yield losses and control difficulties. R. solani invades the stem and root of the host plants, including the maize, rice, soybean, potato, sugar beet, and wheat [9,10], causing necrotic lesions from which it obtains nutrients for development and growth. The cells of the infected plant died prior to hyphae invading them [11], implying that the fungus produces such substances that diffuse and condition the host plant into susceptibility. How this is achieved is presently unknown, though some studies have identified phenolic compounds, phenylacetic acid, and derivatives or carbohydrate-based host-specific toxins in the rice-R. solani AG1–1A interaction. R. solani employs an active mechanism to suppress host defenses and condition the host plant for susceptibility via the production and secretion of proteinaceous toxins and effectors [12,13]. A. niger (black mold), the most common Aspergillus fungal species, is a common food contaminant which causes black mold disease on certain fruits and vegetables. When inhaled or consumed in food and feed contaminated with high levels of aflatoxin, A. niger causes aflatoxicosis.
Organic synthesis has enabled scientists to produce the most intriguing molecules in living nature and their variants in the laboratory by developing novel strategies. Furthermore, using sophisticated catalytic reactions and appropriately designed synthetic processes, the synthesis of natural molecules, their analogues, and a plethora of other organic molecules with vast utilities has become routine. Such molecules aid biology by serving as biological tools. The privileged benzopyran structures, chromenes, chromanes, and chromanones, are phenomenal in developing novel drugs. Precocenes I and II, isolated from Ageratum spp. and Tagetes spp. (the Asteraceae family), have antifungal attributes; insect growth regulators; and allelopathic inhibitory effects on barnyard grass, ryegrass, and bidens clover [14,15,16]. Cumanensic acid, a novel chromene isolated from Piper cf. cumanense Kunth. (the Piperaceae family), was found to have potent antifungal activity against Fusarium oxysporum and Botrytis cinerea [17]. These findings suggested that the privileged benzopyran structures can be used as a promising scaffold for developing novel antifungal compounds. A unique organic synthesis approach was opted in this study to prepare the di-O-alkyl 2,2-dimethyl-2H-1-chromene series, including those of the natural 2H-1-chromenes precocenes II and III. In addition, the mono-O-alkyl-2,2-dimethyl 2H-1-chromene series was synthesized, including the natural product precocene I.
Our knowledge of the precise molecular mechanism by which precocenes inhibit fungal growth is scarce. To decipher the role of precocenes at the molecular level, structure–activity relationship analyses were performed on compounds with promising fungitoxic activity against endopolygalactouronases (PGUs) and voltage-dependent anion channels (VDACs). PGUs, produced by a wide range of organisms, including fungi, bacteria, and plants, perform various physiological and pathological functions, such as cell wall degradation and its remodeling. To penetrate and colonize plant tissues, phytopathogenic microbes deploy PGU as part of their offensive arsenal [18]. PGUs encoded by fungi, with an endo mode of action, catalyze the fragmentation and solubilization of pectin polymers by cleaving the internal bonds of homogalacturonan. Plants, on the other hand, use PGUs in a variety of processes, including growth [19], fruit softening [20,21], root formation [22], organ abscission, and pollen development [23].
The voltage-dependent anion channel (VDAC), a mitochondrial outer membrane protein (also referred to as mitochondrial porin), is responsible for ATP, NADH, and other low-molecular-weight metabolite fluxes [24]. The VDAC interacts with different proteins, such as glucokinase, and plays a role in the release of proapoptotic cytochrome c and superoxide from mitochondria into the cytosol [25].
To the best of our knowledge, 2H-1-chromene compounds (precocenes I, II, and III), and their regioisomers, which aimed to achieve antifungal activity, have rarely been reported [8,26]. The selective fungitoxic effect of natural chromene, precocene II (6,7-dimethoxy-2,2-dimethyl-2H-1-chromene), isolated from the volatile fraction of Ageratum hostoIianum plants against the soil-born fungi R. solani and Phytophthra megasperma, triggered the idea behind this article [16]. Following our ongoing interest in the discovery and development of novel antifungal candidates, the synthesis of the natural 2H-1-chromene compounds, precocenes I, II, and III, as well as the synthesis of a series of regioisomers of those natural products, was carried out to investigate their antifungal activity prospects and their mass production via organic synthesis. In this present work, the naturally occurring precocenes and their analogues were synthesized, characterized, and evaluated for their fungitoxic activity against A. niger and R. solani.

2. Results and Discussion

2.1. Synthesis of Natural 2H-1-Chromene Compounds and Their Alkoxy Regioisomer Analogues

Natural chromene (precocenes II and III) analogues and their regioisomers were synthesized according to Timár and Jaszberenyi [27], with some modifications as illustrated in Scheme 1.
Our initial efforts were primarily focused on choosing one of the many strategies aimed at constructing a benzopyrane structure. The following synthetic strategy was opted: (i) the construction of benzopyranone compounds (synthetic precursors) and benzopyrane compounds in high yields and high purities to study their fungitoxic effects and (ii) the preparation of regioisomers of natural chromenes and their synthetic intermediated chromanones to test the effect of changing the position and type of substituent at the aromatic ring on their potential fungitoxic activity. Finally, the quality, quantity, and structure of the synthesized compounds were assessed using 1HNMR and 13CNMR spectroscopic data.
The first step in the synthesis process was the preparation of compounds 3a (1-[2′,3′,4′-trihydroxyphenyl]-3-methyl-1-Oxo-buta-2-ene), 3b (1-[2′,4′,5′-trihydroxyphenyl]-3-methyl-1-Oxo-but-2-ene), and 8 (1-[2′, 4′-dihydroxyphenyl]-3-methyl-1-oxo-buta-2-ene) via Friedel–Crafts acylation mechanism. The recorded spectral data of 1HNMR elucidate the position of three phenolic OH groups. The proton chemical shift after treatment with D2O showed the absorbance peaks at δ8.6, 10.5, and 13.29 ppm and 8.75, 10.39, and 12.85 ppm for the deuterated compounds 3a and 3b, respectively, while it was 10.57 and 13.26 for compound 8. The spectroscopic findings agreed with the earlier reports [28,29]. In the second step, the heterocyclic benzopyranone compounds, 4a (7,8-dihydroxy 2,2-dimethyl chroman-4-one), 4b (6,7-dihydroxy 2,2-dimethyl chroman-4-one), 4c (5,7-dihydroxy 2,2-dimethyl chroman-4-one), and 9 (7-hydroxy 2, 2-dimethyl chroman-4-one), were obtained via intermolecular Michael addition–cyclization. The proton chemical shift δ of compounds 4a, 4b, 4c, and 9 indicated that there were six equivalent protons (two CH3 groups) detected at δ1.39 (singlet), and two protons of CH2 group were detected up-field at δ2.66 (singlet). In compound 4a, two aryl protons split doublet (J = 6.8 Hz), H-5 and H-6, were detected at δ7.11 and δ6.45, respectively. A broad absorption peak for the OH-8 proton was detected at 8.48 (singlet), while the OH-7 proton was detected down-field at δ 9.97 (singlet). Similarly, the proton chemical shifts of the other two regioisomers, 4b and 4c, meant that the 1HNMR spectrum could position the phenolic OH groups, 9.04 (broad, 1H, OH-6), 10.14 (broad, 1H, OH-7), 10.73 (singlet [s], 1H, OH-5), and 12.11 (s, 1H, OH-7), respectively. In mono hydroxychromanone 9, phenolic OH up-fielded at δ 5.81 (broad, 1H, OH-7). The obtained spectroscopic results for the chroman-4-one skeleton corroborated to the previous reports [30,31,32]. In the third step, the corresponding mono and dihydroxy 2,2-dimethyl chroman-4-one intermediates, 9 and 4ac, were regioselectivity alkylated to yield the 7-O-alkyl analogues. The proton chemical shift of the free OH group of 5a and 5b was detected at δ 5.42 (broad) and δ 5.30 (s), respectively, due to the phenolic OH-8 and OH-6. The absorbance of OH-5 in 5c was detected much more down-field at δ 12.05 (singlet) due to the de-shielding effect of the adjacent C=O group. The proton chemical shift confirmed the transformation of hydroxyl to-OCH2-CH3 at position 7 in compounds 5df. There was absorptance at δ 1.4–1.52 (tertiary) for protons of CH3, J = 7.3 HZ. Protons of the CH2 group in ethoxy were detected at δ 4.02–4.25 and the peak was multiplied into a quartet as a splitting effect of three protons of the neighboring CH3 group, J = 7.3 HZ. The proton chemical shifts of OCH3 and OCH2CH3 in compounds 10a and 10b were up-fielded at 3.84 (s, 3H, OCH3) and 4.05 (quartet [q], 2H, J = 6.0 Hz, OCH2CH3). The spectrum of 1HNMR of compounds 6af proved the methylation of the free OH group in corresponding compounds 5af. The absorbance down-field at δ 3.0–3.9 (s, 3H, OCH3) detected the singlet protons of the transformed methoxy group. In the final two steps of chromanone compounds, the ketonic group was selectively reduced to a secondary hydroxyl group and then dehydrated under mild conditions to produce reduced mono and dialkoxy–2,2–dimethyl 2H–1–chromene compounds 11ab. For the disubstituted compounds 7af, the overall obtained average yield was 53.0–61.0%, and for mono-substituted chromenes 11a and 11b, the overall obtained yields were 62.5% and 87.3%, respectively. The obtained spectroscopic data of 1HNMR and 13CNMR proved that the natural chromenes (7b, 7e, and 11a) and their analogues were pure enough to be used in the antifungal evaluation. Proton and carbon chemical shifts verified the 2H-chromene structure and its substituents. A vinylic proton (H-3) at C-3 was detected at δ 5.4–5.5 and split into doublet with J = 9.9 Hz, while H-4 was detected at δ 6.01–6.28 (doublet[d], J = 9,9 Hz). Carbon chemical shifts of 7af and 11ab confirmed the map of the carbon skeleton and different substitutions at the benzopyrane structure. The obtained spectroscopic data results agreed with several earlier reports of synthetic approaches to the chromenes ring structure [33,34,35,36,37,38].

2.2. Evaluation of Antifungal Activity

Natural chromenes and its alkoxy derivatives, obtained by chemical synthesis, were evaluated for antifungal activities against the selected toxigenic fungi. The novelty of these compounds relies on the simple and straightforward synthesis and the absence of halogenated derivatives. This latter property makes these compounds more environmentally friendly than commercial fungicides. The antifungal activity of all synthesized natural chromenes, precocenes I, II, and III, as well as their analogues and synthetic intermediates, was assessed in vitro against R. solani and A. niger using the poison feed technique. Mycelial growth inhibition was studied at the effective concentrations of 50% (EC50) and 90% (EC90) (Table 1). Almost all the compounds exhibited pronounced fungitoxic effects at varying levels. The EC50 and EC90 values of 3a against A. niger were 614.56 and 833.66 µg × mL−1, respectively, and values of 3b were 1023.29 and 1591.74 µg × mL−1. Both 3a and 3b compounds are regioisomers with different positions of the hydroxy phenolic groups. Nonetheless, the enhanced antifungal activity of 3a could be attributed to the presence of the α,β-unsaturated bond in the side chain adjacent to the C=O group [39]. Moreover, the position of the phenolic OH group was presumed to play an important role in bioactivity. The chemical nature of α,β-unsaturated aldehydes, as well as some of their toxicological effects, was based on their ability to function as direct-acting alkylating agents. Carbonyl carbon is an electrophilic site that readily reacts with nucleophiles [40,41]. Nucleophilic attack on the carbonyl moiety by primary amines, thiols, and possibly alcohols results in the formation of substituted amines, known as Schiff bases and hemiacetals, under physiological conditions. Secondary amine or thiol attack on the initial adducts can cause protein–protein, DNA–protein, or DNA–DNA cross-linking [42]. So, we speculate that the hyper-antifungal activity of 3a is due to the presence of a carbonyl moiety with a double bond.
The EC50 value of 4c was lower than 4a and 4b. The free phenolic OH groups at positions 5 and 7 in 4c boosted its antifungal activity, nearly doubling the activity compared to 4a and 4b (Table 1). It is worth noting that when the phenolic OH group in position 7 of 4c was alkylated, the resulting compound 5c demonstrated a higher antifungal activity. Likewise, methylating the phenolic OH group at position 6 in 4b enhanced the antifungal activity of the resulting product 5b. On the contrary, the antifungal activity of 5a was lowered dramatically. It was also observed that 5c showed much higher activity than its 5f analogue. When a methoxy group in 5a was substituted by an ethoxy group in 5d, the antifungal activity increased nearly sixfold. A similar observation was noticed in 5e. It could be inferred that changing the alkyl group in such compounds could improve their antifungal activity. Abrunhosa et al. [43] evaluated the antifungal activity of chromene dimers and found that the growth and activity of Asprgillus spp. in producing ochratoxin A varied with the change in chromene side chain structure, specifically when the H on benzene ring was replaced by the OCH3 group.
The EC50 values of 6af were highly variable, with 6c having the lowest (398.32 µg × m L−1) and 6b having the highest (1191.30 µg × m L−1) (Table 1). Compound 6c was found to have higher antifungal activity than its regioisomers 6a and 6b. On the other hand, 6d had a strong inhibitory effect on the mycelial growth of A. niger, compared to 6e and 6f. An earlier report on the antifungal activity of the structurally related compound, 2-phenyl-chromen-4-one, showed antifungal activity at high concentrations against Penicillium spp. and Colletotrichum spp. [44]. The compound 2-(4-ethoxy-phenyl)-chromen-4-one is a potent inhibitor of energy-dependent fungicide efflux transporters in Pyrenophora triticirepentis [45]. Using this compound in conjunction with fungicides reversed P. triticirepenti fungicide resistance.
The fungitoxic effect of 7a and 7b was strong against A. niger, with EC50 values of 97.18 µg × mL−1 and 106.8 µg × mL−1, respectively (Table 1; Supplementary Figure S1). Meanwhile, 7c showed no activity against A. niger. Additionally, the reduced antifungal activity of 7df was observed, indicating that substituting a methoxy group with an ethoxy group resulted in the compromised antifungal activity of 7e and 7f, while 7d remained unaffected. The natural product precocene II had antifungal activity with an EC50 value of 89.13 µg × mL−1 [16,46,47]. Chromene inhibited mitochondrial respiration in wild-type yeast [48] and F. graminearum by interacting with the VDAC, resulting in enhanced superoxide levels in mitochondria [49].
The antifungal activity of 9 was lower than 8 (Table 1 and Table 2). The compound 10a inhibited the mycelial growth of A. niger with an EC50 value of 221.31 µg × mL−1 and an EC90 value of 799.7 × µg mL−1 (Table 1). The EC50 value of 10b, on the other hand, was found to have no activity against the tested fungus, while its EC90 value could not be inferred. The compound 11a (precocene I) was found to have nearly twice the antifungal activity of its analogue 11b. Notably, precocene II (7b) inhibited the mycelial growth of A. niger almost three times more effectively than precocene I (11a) at the EC50. Our findings corroborated the previous reports that demonstrated a higher antifungal activity of precocene I, extracted from natural plant extracts, than precocene II [50,51,52]. Precocene II inhibited trichothecene production in F. graminearum by increasing superoxide levels in mitochondria after interacting with VDACs [49,53].
Based on the results obtained for the synthesized compounds against R. solani, two general observations were made: (i) the ethoxy group (which is more bulky, more electron-donating, and less polar) enhanced the fungitoxicity of the chroman-4-one compound more than methoxy group; and (ii) the more substituents on the benzene ring of chroman-4-one structure, the more active as a fungitoxic agent.
Among 7a, 7b, and 7f, both regioisomers 7a (EC50 35.30 and EC90 199.94 µg × mL−1) and 7b (EC50 4.94 and EC90 74.69 μg × mL−1) demonstrated a higher fungitoxic effect against R. solani than 7f (Table 2, Supplementary Figure S2). Similar findings have been demonstrated earlier by Ramadan et al. [16], who found that precocene II, extracted from A. houstonianum essential oil, had promising EC50 values, 2.0 µg × mL−1 and 38.07 × µg mL−1, against R. solani and P. megasperma, respectively. It was suggested that the natural precocene II has a very strong fungitoxic activity against two species of soil-borne disease fungi. The current findings, along with the earlier reports, have opened an array of myriads for using natural fungicides in managing root rot diseases, which cause substantial losses to the agricultural economy.
Likewise, 11a (EC50 10.39 µg × mL−1) was tenfold more fungitoxic than its analogue 11b (EC50 116.47 µg × mL−1) (Table 2). The outstanding fungal inhibition activity of 11a and 11b has never been reported before. The inhibition of the mycelial growth of R. solani observed for compound 8 was higher (EC50 76.62 µg × mL−1) than 3a (EC50 123.77 µg × mL−1). Among the monoalkoxy compounds, 5c showed strong antifungal activity (EC50 46.88 µg mL−1 and EC90 146.16 µg × mL−1). Meanwhile, 6f and 6d induced fungal inhibition at higher concentrations, with EC50 of 204.55 and 720.24 µg × mL−1, respectively, and EC90 values of 245.42, 406.91 µg × mL−1, respectively (Table 2). The observed results revealed that the presence of different moieties, including the free hydroxyl group, the methoxy group, or the ethoxy group in a different position at the benzene ring, strongly enhances the fungitoxic activity of chromenes and chromanones. In a bioassay using the yeast Saccharomyces cerevisiae, the chromene isolated from Eulypa lata either caused death or strongly inhibited the yeast growth [54]. Additionally, a respiratory assay using 2,3,5-triphenyl tetrazolium revealed that eutypinol and eulatachromene inhibited mitochondrial respiration in wild-type yeast and significantly reduced the cell growth of a mutant S. cerevisiae, lacking a thioredoxin peroxidase [54].
From the previous studies, the synthetic benzopyrones and their derivatives exhibited outstanding antifungal activity against different species of phytopathogenic fungi, e.g., Trichophyton longifusus, T. longifusum, Candida albicans, and A. flavus [55,56]. Another chromene derivative, 5-hydroxy-6-acetyl-2-hydroxymethyl-2-methyl chromene, had a strong fungitoxic effect against C. albicans and Cryptococcus neoformans [57]. The compounds [3-(s)-4,6-dihydro-8-methoxy-3,5-dimethyl-6-oxo-3H-2-benzopyrane], [1-(S),3-(S)-6-hydroxy-1,8-dimethoxy-3,5-dimethylisochroman] and [1-ethoxy-6-hydroxy 8-methoxy-3,5-dimethyl isochroman] inhibited the mycelial growth of Lasiodiplodia theobromae at 100 mg × mL−1 concentration [58]. Sariaslani et al. [59] studied the biotransformation of precocene II by microbial enzymes in Streptomyces griseus using 18O2 incorporation studies, concluding that precocene II was transformed into three major metabolites, including the mono-oxygenase enzyme, and could introduce possible evidence of interaction between the heterocyclic oxygen-containing compounds with the enzymatic systems and the mitochondrial respiration. Conner and Beuchat [60] and Knobloch et al. [61] proposed a mechanism for the fungitoxic effect of heterocyclic oxygen compounds, such as chromenes and chromanones, which affect the cell membrane causing increased permeability or interference with a variety of enzyme systems. Aqueous and ether extracts of Ageratum leaves, containing precocene II as a major constituent, inhibited fungal growth by halting the formation of germ tubes by spores in the presence of the tested fungi, which is crucial for the microorganism’s survival because new hyphae formation can only begin with the germ tubes [62]. Precocene II retards fungal growth or stops the release of mycotoxins, such as aflatoxins (B1, B2, G1, and G2) and trichothecenes. It can reduce mRNA synthesis of deoxynivalenol, a contaminant released by F. graminearum that reduces grain utilization [63,64].

2.3. Molecular Docking

Molecular docking analyses of different PGUs and VDACs against chromenes and chromanones are shown in Figures 5 and 6. Precocene has previously been shown to inhibit fungal growth by interacting with PGUs [16]. Therefore, in molecular docking studies, various PGUs from A. niger and R. solani were included. Meanwhile, the VDAC was targeted by precocene II to affect VDAC gating (by gate closing) and inhibit microbial growth [49].
In CB-dock2, the top five cavity sizes were identified, and Vina scores for binding were obtained for each of the cavity, but just one structure with the lowest Vina score and amino acid residues involved with natural inhibitor was presented. Generally, the three chromenes showed less binding affinity/docking scores as compared to the chromanones. More amino acid (AA) residues of R. solani were found interacting with the used ligands than A. niger (Figure 1 and Figure 2; Supplementary Table S1).
Chromenes docked to A. niger-encoded PGUs, 1CZF and 1NHC, had lower docking scores. Two chromenes, 11a (precocene I) and 7b (precocene II), docked against 1CZF with a cavity volume of 246 and Vina scores of −5.4 and −5.8, respectively. Meanwhile, both docked to 1NHC at a cavity volume of 126 and a Vina score of −6.4. The third chromene, 7d, docked to 1CZF at a cavity volume of 483 with a Vina score of −5.8, and docked to 1NHC at a cavity volume of 1901 with a Vina score of −6.7 (Supplementary Table S1). Likewise, the two chromanones, 5c and 10a, docked to 1CZF at a cavity volume of 764 and Vina scores of −6.0 and −5.6, respectively. Both these chromanones docked to 1NHC at a cavity volume of 1901 with Vina scores of −7.2 and −7.1, respectively (Supplementary Table S1).
Chromenes showed higher binding affinities to R. solani-encoded PGUs, PGU1, and PGU2. Three chromenes, 11a, 7b, and 7d, docked to PGU1 with a cavity volume of 359 with Vina scores ranging from −5.6 to −6.2. Likewise, the two chromanones, 5c and 10a, docked to PGU1 at a cavity volume of 359 with Vina scores of −6.4 and −7.0, respectively. Both these chromanones docked to PGU2 at a cavity volume of 1417 with Vina scores of −6.7 and −6.8, respectively (Supplementary Table S1).
The molecular docking analysis demonstrated that 11a and 7b docked to F. solani-encoded VDACs and mouse-encoded VDACs at different cavities; the former docked at a cavity volume of 3839 and the later docked to two different cavity volumes (139 and 933). F. solani-encoded VDACs had smaller Vina scores (−6.3) than two chromanones and a chromene with Vina scores of −6.5 and −7.0, respectively (Supplementary Table S1). Although both VDACs are structurally similar, nonetheless, both docked in different places with synthetic compounds. Generally, 5c, 7b, 7d, and 11a docked to PGUs at similar positions in both A. niger and R. solani by interacting with the same AA residues (Figure 1). Meanwhile, in the case of VDACs, a different trend was observed; 5c and 10a docked to mouse VDACs at the same position, interacting with the same AA residues, while 7b, 7d, and 11a docked to another position. However, in the case of F. solani VDACs, 5c, 7d, and 10a docked at the same position, while 7b and 11a docked at different positions (Figure 2).
To decipher the precise role of chromenes and their derivates as promising alternative fungicides at the molecular level, it is a prerequisite to identify their exact bioreceptor. Nevertheless, the preceding findings could be validated in vivo using PGUs, VDACs, or other fungal enzymes, and could be of interest for futuristic studies.
Abbreviations used in the figure are 7-methoxy, 5-hydroxy 2,2-dimethyl chroman-4-one (5c), 6,7- dimethoxy 2,2-dimethyl 2H-chromene (7b), 7-ethoxy-8-methoxy 2,2-dimethyl 2H-chromene (7d), 7-methoxy 2,2-dimethyl chroman-4-one (10a), and 7-methoxy 2,2-dimethyl 2H-1-chromene (11a). Meanwhile, the amino acids are represented by their standard letters.
Abbreviations used in the figure are 7-methoxy, 5-hydroxy 2,2-dimethyl chroman-4-one (5c), 6,7-dimethoxy 2,2-dimethyl 2H-chromene (7b), 7-ethoxy-8-methoxy 2,2-dimethyl 2H-chromene (7d), 7-methoxy 2,2-dimethyl chroman-4-one (10a), and 7-methoxy 2,2-dimethyl 2H-1-chromene (11a). Meanwhile, the amino acids are represented by their standard letters.

3. Materials and Methods

3.1. Chemicals and Spectroscopy

Trihydroxybenzenes (1,2,3-, 1,2,4-, and 1,3,5-), 1,3-dihydroxybenzene, 3-methyl-but-2-eneoic acid, phosphorus oxichloride, zinc chloride, aluminum chloride, 99% methyl iodide, 99% ethyl iodide, sodium borohydride (NaBH4), and lithium aluminum hydride (LiAlH4) were obtained from Sigma-Aldrich, Canada, and were of analytical grade. Solvents used in organic syntheses were of HPLC grade and subjected to distillation and purification prior to use. Plastic-backed F-254 (thin-layer chromatography (TLC, Fischer, Waltham, MA, USA), 200 µm of silica gel, and silica gel (32–63 µm/60 Å) were used in column chromatography. All the synthetic compounds were characterized with GC-MS (Agilent HP5970, Santa Clara, CA, USA), LC-MS (Agilent, InfinityI, 1100, Santa Clara, CA, USA), NMR (Bruker Avance 500 MHz, Billerica, MA, USA), and FTIR (Bruker Tensor 27 infrared spectrometer, Billerica, MA, USA), and the melting points were measured by a melting point apparatus (Fisher–Johns melting point, Santa Clara, CA, USA).

3.2. General Procedure of the Synthesis of Chromene Analogues

3.2.1. Synthesis of 1-[Trihydroxyphenyl]-3-methyl-1-oxo-buta-2-ene (3ab) and 1-(2′,4′-dihydroxyphenyl)-3-methyl-1-oxo-buta-2-ene (8)

Next, 100.2 g (1 mole) of 3-methyl-but-2-eneoic acid and 1319.7 g (780.1 mL, 8.6 moles) of phosphorus oxychloride were stirred for 10 min. When the reaction mixture cooled down to the 25 ± 2 °C, the flask was charged with 201.5 g (1.4 moles) of zinc chloride. To this mixture, 126.14 g (1.0 mole) of 1,2,3-trihydroxybenzenes 1a and 1,2,4-trihydroxybenzenes 1b was added. Then, the reaction mixture was stirred at 25 °C for 6 h to yield 3a (1-[2′,3′,4′-trihydroxyphenyl]-3-methyl-1-oxo-buta-2-ene) and stirred for 2 h to yield 3b (1-[2′,4′,5′-trihydroxyphenyl]-3-methyl-1-Oxo-but-2-ene). Compound 8 (1-(2′,4′-dihydroxyphenyl)-3-methyl-1-oxo-buta-2-ene) was synthesized by mixing 55.06 g (0.5 moles) of resorcinol (1,3-dihydroxybenzene), 50.10 g (0.5 moles) of 3-methyl-but-2-enoic acid, and 613.8 g (363.2 mL, 4 moles) of POCl3 at 25 °C under inert gas (argon) conditions, and then 80 g (0.6 moles) of dry AlCl3 was added to it to yield 8 [65]. The reaction was monitored by TLC (n-hexane: ethyl acetate 1:1); upon completion, the mixture was poured onto crushed ice and then filtered. The crude solid dried under reduced pressure and the product was obtained by re-crystallization from the ethanol–water (95:5) system to yield 3a, 3b, and 8, respectively. The reaction yield was calculated as a percentage of the actual weight of purified 3a (68.62%), 3b (50.85%), and 8 (97.4%) to their theoretical weight. The measured melting point (MP) was 137–138 °C for 3a and 165 °C for 3b (the reported MP was 162–164 °C [33]), the while MP of 8 was 74 °C. Purified compounds were subjected to structure elucidation; the GC-MS spectral data for compound 3a, Rt = 20.271 min, MS (EI, 70 eV): m/z (%) = 208 (54) [M+], 193 (100) [M-Me], 152 (81), 137 (15), 123 (21), 113 (19), 106 (21), 95 (26), 83 (26), 77 (30), 68 (30), 51 (54).
The 1HNMR (DMSO-d6) spectral data for compound 3a: 2.0 [s, 3H, CH3), 2.15 (s, 3H, CH3), 6.36 [duplet (d)], 1H, J = 9.4 Hz, 5′-H), 6.90 (s, 1H, 2-H), 7.37 (d, 1H, J = 9.4 Hz, 6′-H), 8.6 (s, 1H, 3′OH), 10.5 (s, 1H, 4′OH), 13.29 (s, 1H, 2′OH).
The 1HNMR (DMSO-d6) spectral data for compound 3b: 2.0 (s, 3H, CH3), 2.11 (s, 3H, CH3), 6.28 (s, 1H, 3′H), 6.76 (s, 1H, 2H), 7.23 (s, 1H, 6′H), 8.75 (broad, 1H, 4′/5′OH), 10.39 (broad, 1H, 4′/5′OH), 12.85 (s, 1H, 2′OH).
The GC-MS spectral data for compound 8: Rt = 17.370 min, MS (EI, 70 eV): m/z (%) = 192 (5) [M+], 177 (100) [M+-Me], 137 (31), 108 (7), 81 (11), 69 (11), 51 (16).
The 1HNMR (DMSO-d6) spectral data for compound 8: 2.01 (s, 3H, CH3), 2.15 (s, 3H, CH3), 6.25 (s, 1H, H-3′), 6.35 (d, 1H, J = 9 Hz, H-5′), 6.91 (s, 1H, H-2), 7.84 (d, 1H, J = 9 Hz, H-6′), 10.57 (s, 1H, OH-4′), 13.26 (s, 1H, OH-2′).
The 1HNMR, 13CNMR, and mass spectra of all prepared compounds in the experimental section are available in the Supplementary Figures S3–S65.

3.2.2. Synthesis of dihydroxy 2,2-dimethylchroman-4-one (4ac) and 7-hydroxy 2, 2-dimethyl chroman-4-one (9)

Afterwards, 100 g (0.48 moles) of 3a or 3b compounds or 76.8 g (0.4 moles) of compound 8 was dissolved in 1 L of 5% aqueous NaOH solution (1.25M) and stirred for 1.5–2.0 h at room temperature. After the reaction was completed, the solution was diluted with 500 mL of cold distilled water. Then, the solution was acidified by dropping 36% HCl until pH 1 was obtained. The 4c (5,7-dihydroxy-2,2-dimethyl-4-chroman-4-one) was prepared directly from 1,3,5-trihydroxybenzene (1c), and 162.14g (1.0 mole) of 3-methyl-but-2-eneoic acid and POCl3/ZnCl2 were mixed. The reaction was set overnight at 25 °C, as described in Section 2.1. The purification of crude products was achieved by column chromatography to obtain 4a and re-crystallization from ethanol–water (9:1) to obtain 4b, 4c, and 8. The reaction yields 95.1%, 87.6%, 51.8%, and 74.2% and MPs were 197–198, 207, 142, and 173 °C for 4a, 4b, 4c, and 8, respectively (reported MPs were 199, 208, and 142 °C for 4ac, respectively, [66]). The GC-MS spectral data of relevant compound 4a (7,8-dihydroxy 2,2-dimethyl chroman-4-one), Rt = 19.763 min, MS (EI, 70 eV): m/z (%) = 208 (39) [M+], 193 (40.5), 152 (100) [M+-CH2=C(CH3)2], 124 (13.4), 106 (14.1), 113 (19), 106 (14), 95 (8), 68 (11), 53 (13).
The 1HNMR (DMSO-d6) spectral data for compound 4a: 1.39 (s, 6H, 2CH3), 2.66 (s, 2H, CH2), 6.45 (d, 1H, J = 6.8 Hz, H-6), 7.11 (d, 1H, J = 6.8 Hz, H-5), 8.48 (broad, 1H, OH-8), 9.97 (s, 1H, OH-7).
The GC-MS spectral data for compound 4b (6,7-dihydroxy2,2-dimethylchroman-4-one), Rt = 21.313 min, MS (EI, 70 eV): m/z (%) = 208 (48) [M+], 193 (100) [M+-Me], 153 (27), 124 (41), 106 (14.1), 96 (20), 78 (11), 51 (13).
The 1HNMR (DMSO-d6) spectral data for compound 4b: 1.34 (s, 6H, 2CH3), 2.59 (s, 2H, CH2), 6.27 (s, 1H, H-8), 7.04 (s, 1H, H-5), 9.04 (broad, 1H, OH-6), 10.14 (broad, 1H, OH-7).
The GC-MS spectral data for compound 4c (5,7-dihydroxy-2,2-dimethyl chroman-4-one), Rt = 19.790 min, MS (EI, 70 eV): m/z (%) = 207 (100) [M+], 167 (78), 138 (39), 123 (15), 110 (17), 69 (38), 51 (15).
The 1HNMR (DMSO-d6) spectral data for compound 4c: 1.38 (s, 6H, 2CH3), 2.77 (s, 2H, CH2), 5.82 (multiplet [m], 2H, ArH 6/8), 10.73 (s, 1H, OH-5), 12.11 (s, 1H, OH-7).
The GC-MS spectral data for compound 9: 7-hydroxy 2, 2-dimethyl chroman-4-one, Rt = 16.521 min, MS (EI, 70 eV): m/z (%) = 192 (55) [M+], 177 (100) [M+-Me], 137 (61), 108 (56), 95 (5), 80 (20), 69 (18), 51 (21).
The 1HNMR (CDCl3) of compound 8 had the following attributes; 1.46 (s, 6H, 2CH3), 2.68 (s, 2H, CH2), 5.81 (broad, 1H, OH-7), 6.35 (s, 1H, ArH-8), 6.48 (d, 1H, J = 9 Hz, ArH-6), 7.80 (d, 1H, J = 9 Hz, ArH-5).

3.2.3. Synthesis of Monoalkoxy, Monohydroxy-2,2-dimethyl chroman-4-ones (5af) and 7-O-alkyl-2, 2-dimethyl chroman-4-one (10ab)

A regioselective alkylation was used to prepare the monoalkoxy and monohydroxy 2,2-dimethylchroman-4-one series (5af). Under inert gas (argon) conditions, 40 g (0.19 moles) of 4ac or 19.2 g (0.1 moles) of compound 9 was charged with 100 mL of dry N,N-dimethylformamide for 4ac or 100 of dry acetone for compound 9, and then 26.6 g (0.19 moles) or 14.0 g (0.1 moles) of anhydrous K2CO3 was added to the solutions and stirred at 25 °C for 1h. The resultant solution was refluxed at 80 °C. Then, 29.81 g (19.47 mL, 0.21 moles) of 99% methyl iodide used to yield 5ac and 15.61 g (10.20 mL, 0.11 moles) used to prepare 10a, or 32.76 g (16.8 mL, 0.21 moles) of 99% ethyl iodide used to yield 5df and 17.16 g (8.80 mL, 0.11 moles) used to yield 10b, was dropped by a programable syringe pump (LAMBDA-FIT, Baar, Switzerland) for over 1.5–6.0 h. The progress of the reaction was monitored by TLC (9:1 hexane: ethylacetate). The reaction times for individual compounds are listed in Table 3.
After completing the reaction, the mixture was cooled to 22 °C ± 2 and the solvent was distilled off. Then, the residue was dissolved in a 5% aqueous NaOH solution and extracted with CH2Cl2. The organic phase was discarded, and the alkaline aqueous phase was then acidified with conc. HCl (pH 1–2). The filtered-out solid was dried overnight under reduced pressure. The product was subjected to re-crystallization using an ethanol–water (5% water) extraction. The recorded MPs were 78, 108, 54, 141–143, 106–107, and 74 °C for 5af, respectively, while the reported MPs were 70, 113–114, 68, 141, 109, and 78 °C, respectively [66,67,68]. The recorded MPs for 10a and 10b were 79–81 and 85 °C, respectively.
The GC-MS spectral data for compound 5a (7-methoxy, 8-hydroxy 2,2-dimethyl chroman-4-one): Rt = 21.123 min, MS (EI, 70 eV): m/z (%) = 222 (80) [M+], 167 (100) [M+-CH=C(CH3)2], 207 (90), 192 (8.9), 152 (7.1), 148 (75), 137 (28), 120 (91), 95 (51), 67 (22), 53 (31).
The 1HNMR (CDCl3) spectral data for compound 5a: 1.51 (s, 6H, 2CH3), 2.72 (s, 2H, CH2), 3.96 (s,3H, OCH3-7), 5.42 (broad, 1H, OH-8), 6.6 (d, 1H, J = 9.8 Hz, ArH-6), 7.5 (d, 1H, J = 9.8 Hz, ArH-5).
The GC-MS spectral data for compound 5b (7-methoxy, 6-hydroxy 2,2-dimethyl chroman-4-one): Rt = 22.062 min, MS (EI, 70 eV): m/z (%) = 222 (50) [M+], 167 (100) [M+-CH=C(CH3)2], 207 (99), 192 (10), 138 (8), 123 (71), 111 (9), 95 (16), 79 (9), 53 (51).
The 1HNMR (CDCl3) spectral data for compound 5b: 1.45 (s, 6H, 2CH3), 2.67 (s, 2H, CH2), 3.93 (s, 3H, OCH3-7), 5.30 (s, 1H, OH-6), 6.41 (s, 1H, ArH-8), 7.36 (s,1H, ArH-5).
The GC-MS spectral data for compound 5c (7-methoxy, 5-hydroxy 2,2-dimethyl chroman-4-one): Rt = 19.920 min, MS (EI, 70 eV): m/z (%) = 222 (46) [M+], 207 (100) [M+-Me], 166 (24), 138 (24), 123 (6), 110 (13), 95 (32), 69 (25), 53 (14).
The 1HNMR (CDCl3) spectral data for compound 5c: 1.49 (s, 6H, 2CH3), 2.72 (s, 2H, CH2), 3.84 (s, 3H, OCH3-7), 5.9 (d, 1H, J = 2.4 Hz, H-6/8), 6.3 (d, 1H, J = 2.4 Hz, H-6/8), 12.05 (s, 1H, OH-5).
The GC-MS spectral data for compound 5d (7-ethoxy, 8-hydroxy 2,2-dimethyl chroman-4-one): Rt = 21.871 min, MS (EI, 70 eV): m/z (%) = 236 (81) [M+], 152 (100) [M+-C4H10O], 221 (81), 193 (26), 181 (76), 162 (52), 134 (44), 123 (42), 106 (26), 95 (42), 79 (25), 68 (27), 53 (25). The 1HNMR (CDCl3) spectral data for compound 5d: 1.52 (triplet (t), 3H, J = 7.3 Hz, OCH2CH3), 1.57 (s, 6H, 2CH3), 2.77 (s, 2H, CH2), 4.25 (quartet (q), 2H, J = 7.3 Hz, OCH2CH3), 5.49 (broad, 1H, OH-8), 6.63 (d, 1H, J = 9.8 Hz, ArH-6), 7.5 (d, 1H, J = 9.8 Hz, H-5).
The GC-MS spectral data for compound 5e (7-ethoxy, 6-hydroxy 2,2-dimethyl chroman-4-one): Rt = 23.031 min, MS (EI, 70 eV): m/z (%) = 236 (57) [M+], 221 (100) [M+-Me], 193 (47), 180 (56), 153 (55), 124 (14), 107 (10), 95 (12), 82 (35), 53 (48).
The 1HNMR (CDCl3) spectral data for compound 5e: 1.45 (s, 6H, 2CH3), 1.49 (triplet [t], 3H, J = 7.3 Hz, OCH2CH3), 2.66 (s, 2H, CH2), 4.13 (q, 2H, J = 7.3 Hz, OCH2CH3), 5.3 (s, 1H, OH-6), 6.38 (s, 1H, ArH-8), 7.36 (s, 1H, ArH-5).
The GC-MS spectral data for compound 5f (7-ethoxy, 5-hydroxy 2,2-dimethyl chroman-4-one): Rt = 20.623 min, MS (EI, 70 eV): m/z (%) = 236 (58) [M+], 221 (100) [M+-Me], 193 (49), 181 (50), 153 (45), 124 (49), 96 (19), 69 (46), 55 (17).
The 1HNMR (CDCl3) spectral data for compound 5f: 1.4 (t, 3H, J = 7.3 Hz, OCH2CH3), 1.5 (s, 6H, 2CH3), 2.68 (s, 2H, CH2), 4.02 (q, 2H, J = 7.3 Hz, OCH2CH3), 5.93 (d, 1H, J = 2.4 Hz, ArH 6/8), 5.99 (d,1H, J = 2.4 Hz, ArH 6/8), 12.01 (s,1H, OH-5).
The GC-MS spectral data for compound 10a (7-O-methyl-2, 2-dimethyl chroman-4-one) Rt = 15.119 min, MS (EI, 70 eV): m/z (%) = 206 (31) [M+], 191 (100) [M+-Me], 151 (80), 122 (50), 107 (30), 95 (11), 79 (28), 63 (25), 51 (29).
The 1HNMR (CDCl3) spectral data for compound 10a: 1.46 (s, 6H, 2CH3), 2.68 (s, 2H, CH2), 3.84 (s, 3H, OCH3), 6.38 (m, 1H, ArH-8), 6.54 (d, 1H, J = 9 Hz, ArH-6), 7.8 (d, 1H, J = 9 Hz, ArH-5).
The GC-MS spectral data for compound 10b (7-O-ethyl-2, 2-dimethyl chroman-4-one): Rt = 15.991 min, MS (EI, 70 eV): m/z (%) = 220 (67) [M+], 205 (100) [M+-Me], 165 (49), 136 (69), 108 (49), 80 (17), 69 (18), 51 (20).
The 1HNMR (CDCl3) spectral data for compound 10b: 1.42 (t, 3H, J = 6.0 Hz, OCH2CH3), 1.45 (s, 6H, 2CH3), 2.66 (s, 2H, CH2), 4.05 (q, 2H, J = 6.0 Hz, OCH2CH3), 6.35 (m, 1H, ArH-8), 6.52 (d, 1H, J = 9 Hz, ArH-6), 7.78 (d, 1H, J = 9 Hz, ArH-5).

3.2.4. Synthesis of dialkoxy 2,2-dimethyl chroman-4-one (6af)

To obtain 6af, 0.1 moles of respective 5af in 100 mL of N,N-dimethylformamide was treated with 15.4g (0.11 moles) of anhydrous K2CO3, and 19.87 g (12.98 mL, 0.14 moles) of CH3I (99%) was added using a programmable syringe pump (LAMBDA-FIT, Switzerland), as described in Section 2.2. The reaction time and reaction yield are presented in Table 3. The products were refined after cooling to 20 °C, and then the mix was poured onto crushed ice and extracted twice with CH2Cl2. The organic layer was washed two times with NaOH 2% and water, and dried over anhydrous sodium sulfate. After removing the solvent, the product was re-crystallized from ethanol. The GC-MS spectral data for compound 6a (7,8-dimethoxy-2,2-dimethylchroman-4-one): Rt = 20.227 min, MS (EI, 70 eV): m/z (%) = 236 (85) [M+], 221 (100) [M+-Me], 181 (93), 152 (89), 137 (51), 120 (33), 109 (34), 94 (34), 78 (17), 66 (31), 53 (34), 51 (12).
The 1HNMR (CDCl3) spectral data for compound 6a: 1.52 (s, 6H, 2CH3), 2.71 (s, 2H, CH2), 3.8 (s, 3H, OCH3), 3.9 (s, 3H, OCH3), 6.6 (d, 1H, J = 10.6 Hz, ArH-6), 7.66 (d, 1H, J = 10.6 Hz, ArH-5).
The GC-MS spectral data for compound 6b (6,7-dimethoxy-2,2-dimethylchroman-4-one): Rt = 17.603 min, MS (EI, 70 eV): m/z (%) = 236 (49) [M+], 221 (100) [M+-Me], 205 (5), 181 (79), 165 (32), 137 (33), 109 (10), 109 (10), 53 (37).
The 1HNMR (CDCl3) spectral data for compound 6b: 1.47 (s, 6H, 2CH3), 2.68 (s, 2H, CH2), 3.89 (s, 3H, OCH3), 3.89 (s, 3H, OCH3), 6.41 (s, 1H, ArH-8), 7.27 (s, 1H, ArH-5).
The GC-MS spectral data for compound 6c (5,7-dimethoxy-2,2-dimethylchroman-4-one): Rt = 18.097 min, MS (EI, 70 eV): m/z (%) = 236 (54) [M+], 180 (100) [M+-CH2=C(CH3)2], 221 (25), 152 (59), 137 (62), 109 (20), 95 (18), 79 (16), 53 (25).
The 1HNMR (CDCl3) spectral data for compound 6c: 1.44 (s, 6H, 2CH3), 2.64 (s, 2H, CH2), 3.82 (s, 3H, OCH3), 3.88 (s, 3H, OCH3), 6.03 (s, 2H, ArH-6/8).
The GC-MS spectral data for compound 6d (7-ethoxy- 8-methoxy-2,2-dimethyl chroman-4-one): Rt = 19.256 min, MS (EI, 70 eV): m/z (%) = 250 (2.6) [M+], 219 (100) [M+-OCH3], 234 (12), 191 (77), 176 (12), 147 (6), 69 (17), 53 (5).
The 1HNMR (CDCl3) spectral data for compound 6d: 1.44 (t, 3H, J = 7.8 Hz, OCH2CH3), 1.49 (s, 6H, 2CH3), 2.68 (s, 2H, CH2), 3.84 (s, 3H, OCH3-8), 4.1 (q, 2H, J = 7.8 Hz, OCH2CH3), 6.56 (d, 1H, J = 10.6 Hz, ArH-6), 7.61 (d, 1H, J = 10.6 Hz, ArH-5).
The GC-MS spectral data for compound 6e (7-ethoxy- 6-methoxy-2,2-dimethyl chroman-4-one): Rt = 22.209 min, MS (EI, 70 eV): m/z (%) = 250 (2.6) [M+], 235 (100) [M+-Me], 195 (76), 179 (8), 167 (72), 137 (20), 123 (20), 111 (6), 95 (16), 69 (78), 53 (5).
The 1HNMR (CDCl3) spectral data for compound 6e: 1.46 (s, 6H, 2CH3), 1.55 (t, 3H, J 7.4 Hz, OCH2CH3), 2.66 (s, 2H, CH2), 3.87 (s, 3H, OCH3-6), 4.13 (q, 2H, J = 7.4 Hz, OCH2CH3), 6.39 (s, 2H, ArH-5/8).
The GC-MS spectral data for compound 6f (7-ethoxy- 5-methoxy-2,2-dimethyl chroman-4-one): Rt = 22.962 min, MS (EI, 70 eV): m/z (%) = 250 (51) [M+], 166 (100) [M+-C5H8O], 150 (24), 138 (27), 123 (24), 69 (36).
The 1HNMR (CDCl3) spectral data for compound 6f: 1.39 (t, 3H, J = 7.8 Hz, OCH2CH3), 1.44 (s, 6H, 2CH3), 2.64 (s, 2H, CH2), 3.87 (s, 3H, OCH3-5), 4.03 (q, 2H, J = 7.8 Hz, OCH2CH3), 6.01 (m, 2H, ArH-6/8).

3.2.5. Synthesis of dialkoxy 2,2-dimethyl 2H-1-chromene (7af) and monoalkoxy 2,2-dimethyl 2H-1-chromene (11ab)

The 2H-1-chromene compounds (7af) were prepared following the reduction and dehydration of the corresponding 6af compounds. In total, 0.05 moles of compounds 6af was dissolved in 100 mL of dry methanol (absolute) and then treated with 5 g (0.13 moles) of NaBH4 dissolved in 50 mL of dry methanol (absolute) using a dropping funnel over one hour under a stream of argon gas condition. Similarly, 7-O-methyl-2,2-dimethylchromene (11a; precocenes I) and 7-O-ethyl-2,2-dimethylchromene (11b) were synthesized by reducing 0.07 moles of compounds 10ab, respectively, with 5.31 g (0.13 moles) of LiAlH4 in 50 mL of dry tetrahydrofuran (THF). After the reduction process, the reaction was stopped by adding 100 mL of water, and the product was extracted from the mixture with CH2Cl2. The reaction was monitored by TLC with hexane–ethyl acetate in a ratio of 1:1. Subsequently, the solvent was removed, and the residue was subjected to dehydration with 100 mL (4 mol × L−1) of HCl in dry THF at 5 °C using a dropping funnel over 1h. The time required to complete the reduction and dehydration is presented in Table 4. The crude products were extracted by diethyl ether several times, and the combined organic layer was extracted with 5% NaOH solution and then dried over anhydrous Na2SO4. The product was obtained by column chromatography (9:1 hexane: Et2O).
The GC-MS spectral data for compound 7a (7,8-dimethoxy 2,2-dimethyl 2H-chromene): Rt = 17.348 min, MS (EI, 70 eV): m/z (%) = 220 (16) [M+], 205 (100) [M+-Me], 190 (14), 161 (14), 144 (7), 91 (7), 51 (6).
The 1HNMR (CDCl3) spectral data for compound 7a: 1.47 (s,6H,2CH3), 3.84 (s, 3H, OCH3), 3.87 (s, 3H, OCH3), 5.5 (d, 1H, J = 9.9 Hz, H-3), 6.26 (d, 1H, J = 9.9 Hz, H-4), 6.41 (d, 1H, J = 7.8 Hz, ArH-6), 6.68 (d, 1H, J = 7.8 Hz, ArH-5).
The 13CNMR (CDCl3) spectral data for compound 7a: 28.1 (2CH3), 60.9 (OCH3-7), 64.6 (OCH3-8), 76.5 (C-2), 105.5 (C-6), 116.3 (C-4a), 120.8 (C-5), 122.3 (C-4), 128.6 (C-3), 138.1 (C-8), 146.7 (C-8a), 152.98 (C-6).
The GC-MS spectral data for compound 7b (6,7- dimethoxy 2,2-dimethyl 2H-chromene): Rt = 17.781 min, MS (EI, 70 eV): m/z (%) = 220 (16) [M+], 205 (100) [M+-Me], 189 (13), 161 (15), 91 (10), 77 (10), 69 (11), 51 (6).
The 1HNMR (CDCl3) spectral data for compound 7b: 1.41 (s, 6H, 2CH3), 3.84 (s, 3H, OCH3), 3.85 (s, 3H, OCH3), 5.46 (d, 1H, J = 9.9 Hz, H-3), 6.24 (d, 1H, J = 9.9 Hz, H-4), 6.43 (s, 1H, ArH-8), 6.254 (s, 1H, ArH-5).
The 13CNMR (CDCl3) spectral data for compound 7b: 27.9 (2CH3), 56.1 (OCH3-6/7), 56.7 (OCH3-6/7), 76.8 (C-2), 101.2 (C-8), 109.9 (C-5), 113.2 (C-4a), 122.1 (C-4), 128.4 (C-3), 143.2 (C-8a), 147.3 (C-7), 149.8 (C-6).
The GC-MS spectral data for compound 7c (5,7-dimethoxy 2,2-dimethyl 2H-chromene): Rt = 18.287 min, MS (EI, 70 eV): m/z (%) = 220 (14) [M+], 205 (100) [M+-Me], 190 (18), 161 (11), 147 (8), 77 (8), 69 (8), 51 (4).
The 1HNMR (CDCl3) spectral data for compound 7c: 1.41 (s, 6H, 2CH3), 3.76 (s, 3H, OCH3), 3.78 (s, 3H, OCH3), 5.40 (d, 1H, J = 10.3 Hz, H-3), 6.01 (m, 2H, ArH-6/8), 6.57 (d, 1H, J = 10.3 Hz, H-4).
The 13CNMR (CDCl3) spectral data for compound 7c: 27.7 (2CH3), 55.2 (OCH3-5/7), 55.4 (OCH3-5/7), 76.1 (C-2), 91.4 (C-6), 94.1 (C-8), 104.2 (C-4a), 116.7 (C-4), 125.7 (C-3), 154.7 (C-8a), 156.1 (C-7), 161.01 (C-5).
The GC-MS spectral data for compound 7d (7-ethoxy-8-methoxy 2,2-dimethyl 2H-chromene): Rt = 18.041 min, MS (EI, 70 eV): m/z (%) = 236 (25) [M+], 219 (100) [M+-Me], 191 (51), 176 (37), 115 (10), 91 (20), 77 (12), 51 (10).
The 1HNMR (CDCl3) spectral data for compound 7d: 1.41 (t, 3H, J = 6.9 Hz, OCH2CH3), 1.74 (s, 6H, 2CH3), 3.86 (s, 3H, OCH3), 4.06 (q, 2H, J = 6.9 Hz, OCH2CH3), 5.51 (d, 1H, J = 9.5 Hz, H-3), 6.28 (d, 1H, J = 9.5 Hz, H-4), 6.41 (d, 1H, J = 8.6 Hz, ArH-6), 6.65 (d, 1H, J = 8.6 Hz, ArH-5).
The 13CNMR (CDCl3) spectral data for compound 7d: 15.4 (OCH2CH3), 28.41 (2CH3), 61.23 (OCH3), 64.94 (OCH2CH3), 76.77 (C-2), 105.85 (C-6), 116.65 (C-4a), 121.14 (C-5), 122.56 (C-4), 128.93 (C-3), 138.93 (C-8), 147.3 (C-8a), 153.29 (C-7).
The GC-MS spectral data for compound 7e (7-ethoxy-6-methoxy 2,2-dimethyl 2H-chromene): Rt = 18.826 min, MS (EI, 70 eV): m/z (%) = 236 (25) [M+], 219 (100) [M+-Me], 191 (91), 176 (24), 91 (22), 77 (20), 69 (23), 51 (12).
The 1HNMR (CDCl3) spectral data for compound 7e: 1.42 (s, 6H, 2CH3), 1.48 (t, 3H, J = 6.9 Hz, OCH2CH3), 3.8 (s, 3H, OCH3), 4.06 (q, 2H, J = 6.9 Hz, OCH2CH3), 5.45 (d, 1H, J = 10 Hz, H-3), 6.24 (d, 1H, J = 10 Hz, H-4), 6.42 (s, 1H, ArH-5/8), 6.54 (s, 1H, ArH-5/8).
The 13CNMR (CDCl3) spectral data for compound 7e: 14.9 (OCH2CH3), 27.8 (2CH3), 56.8 (OCH3), 64.4 (OCH2CH3), 76.8 (C-2), 102.3 (C-8), 110.3 (C-4a), 113.3 (C-5), 122.2 (C-4), 128.4 (C-3), 143.1 (C-8a), 147.4 (C-7), 149.5 (C-6).
The GC-MS spectral data for compound 7f (7-ethoxy-5-methoxy 2,2-dimethyl 2H-chromene): Rt = 16.081 min, MS (EI, 70 eV): m/z (%) = 236 (2) [M+], 219 (100) [M+-Me], 234 (20), 191 (66), 176 (24), 147 (19), 91 (17), 69 (22), 51 (10).
The 1HNMR (CDCl3) spectral data for compound 7f: 1.38 (t, 3H, J = 6.8 Hz, OCH2CH3), 1.41 (s, 6H,2CH3), 3.79 (s,3H, OCH3), 4.0 (q, 2H, J = 6.8 Hz, OCH2CH3), 5.41 (d, 1H, J = 9.8 Hz, H-3), 6.02 (m, 2H, ArH-6/8), 6.58 (d, 1H, J = 9.8 Hz, H-4).
The 13CNMR (CDCl3) spectral data for compound 7f: 14.8 (OCH2CH3), 28.1 (2CH3), 55.4 (OCH3), 63.0 (OCH2CH3), 76.59 (C-2), 92.11 (C-6), 94.82 (C-8), 104.53 (C-4a), 116.79 (C-4), 126.17 (C-3), 155.01 (C-8a), 158.65 (C-7), 160.76 (C-5).
The GC-MS spectral data for compound 11a (7-O-methyl-2,2-dimethylchromene): Rt = 12.582 min, MS (EI, 70 eV): m/z (%) = 190 (10) [M+], 175 (100) [M+-Me], 160 (10), 132 (14), 115 (4), 103 (4), 91 (4), 77 (8), 63 (6), 51 (8).
The 1HNMR (CDCl3) spectral data for compound 11a: 1.41 (s, 6H, 2CH3), 3.75 (s, 3H, OCH3), 5.45 (d, 1H, J = 10 Hz, H-3), 6.26 (d, 1H, J = 10 Hz, H-4), 6.36 (m, 1H, ArH-8), 6.4 (d, 1H, J = 8.0 Hz, ArH-6), 6.86 (d, 1H, J = 8.0 Hz, ArH-5).
The 13CNMR (CDCl3) spectral data for compound 11a: 28.02 (2CH3), 55.1 (OCH3), 76.7 (C-2), 102.09 (C-8), 106.8 (C-4a), 115.03 (C-5), 122.02 (C-4), 127.3 (C-3), 128.5 (C-6), 154.5 (C-8a), 161.06 (C-7).
The GC-MS spectral data for compound 11b (7-O-ethyl-2,2-dimethylchromene): Rt = 13.432 min, MS (EI, 70 eV): m/z (%) = 204 (20) [M+], 161 (100) [M+-C2H4O], 189 (92), 132 (11), 115 (9), 105 (7), 91 (7), 77 (21), 63 (7), 51 (8).
The 1HNMR (CDCl3) spectral data for compound 11b: 1.37 (t, 3H, J = 6.0 Hz, OCH2CH3), 1.42 (s, 6H, 2CH3), 4.01 (q, 2H, J = 6.0 Hz, OCH2CH3), 5.45 (d, 1H, J = 10 Hz, H-3), 6.26 (d, 1H, J = 10 Hz, H-4), 6.36 (m, 1H, ArH-8), 6.4 (d, 1H, J = 8.0 Hz, ArH-6), 6.86 (d, 1H, J = 8.0 Hz, ArH-5).
The 13CNMR (CDCl3) spectral data for compound 11b: 15.2 (OCH2CH3), 28.4 (2CH3), 63.8 (OCH2CH3), 76.7 (C-2), 102.9 (C-8), 107.6 (C-4a), 114.9 (C-5), 122.3 (C-4), 127.3 (C-3), 128.1 (C-6), 154.5 (C-8a), 160.4 (C-7).

3.2.6. Fungitoxic Evaluation of Synthetic Chromene and Chromanone Compounds

The antifungal activity of all synthesized compounds and the standard antifungal drug amphotericin-B was evaluated in vitro against two phytopathogenic fungi, R. solani and A. niger, using the poisoned food technique [69]. Pure fungi cultures were obtained from the Department of Plant Pathology, Faculty of Agriculture, Ain-Shams University, Egypt, and the Department of Biology, Faculty of Science, Memorial University of Newfoundland, St. John’s, NL. Canada. Two cultural media, Czapek–Dox agar (CDA) and potato dextrose agar (PDA), were used in this study. Cultural media were obtained from Merck Chem. Co (Canada). CDA media were used as specific growth media for A. niger, while PDA media were used as growth media for R. solani. The fungitoxic activity of 29 compounds (chromanones and chromenes) was tested against A. niger and R. solani in vitro at various concentrations, ranging from 100 to 800 μg × mL−1, while amphotericin-B (X-GEN, NY, USA) was used at 5–25 μg × mL−1. An in vitro assay was performed on PDA and CDA growth media treated with gradient concentrations of all the synthesized compounds (100–800 µg × mL−1 in sterilized DMSO (5%) + Tween-20 as a dispersing agent). Then, 1 mL of a solution containing different compounds was poured into sterilized melted media, homogenized, and plated into Petri dishes (90 × 15 mm). The media-containing compounds were incubated for 48 h at 25 °C. After incubation, all plates were inoculated with agar plugs containing fungi and incubated again at 22 °C for 8 days. To assess mycelial inhibition, fungal growth diameters (mm) were measured daily, and radial inhibition was calculated when negative control plates were fully covered with the fungal mycelial. For all treatments, four replicates were used, and the percentage of mycelial growth inhibition was calculated according to the equation suggested by Pandey et al. [70].
% mycelial inhibition = (dc − dt)/dc × 100
where:
  • dc = the diameter of the fungal colony in the negative control;
  • dt = the diameter of the fungal colony in treatment.
The positive control (inoculated media with fungus and DMSO + Tween-20) was used to evaluate the toxicity of the solvent and the dispersing agent. In addition, the synthetic antibiotic drug, amphotericin-B (X-GEN, NY, USA), was also used as a standard antifungal drug at concentrations of 5–25 µg × mL−1. The EC50 and EC90 for all treatments were calculated using a regression equation between the log concentrations and the probit of the percentage growth inhibition of fungi, according to Abd El-Naeem et al. [71].

3.3. Molecular Docking

To determine the interaction mode of A. niger- and R. solani-encoded PGUs with different synthetic chromenes and chromanones, two available structures of A. niger-encoded PGUs (PDB ID 1CZF and 1NHC) were retrieved from the Protein Data Bank (PDB; https://www.rcsb.org/structure/) (accessed on 8 June 2022). Two additional PGU sequences (accession numbers KP896518 and KP896519) were retrieved from the NCBI Data Bank (https://pubmed.ncbi.nlm.nih.gov/) (downloaded on 7 June 2022) and their 3D structures were inferred using iTASSER (https://zhanggroup.org/I-TASSER/) (accessed on 10–15 June 2022) and Alpha fold2 (https://alphafold.ebi.ac.uk/) (accessed on 10–16 June 2022) tools. Fusarium solani-encoded VDAC mRNA sequences (accession # XM0462760) were retrieved from the NCBI Data Bank (https://pubmed.ncbi.nlm.nih.gov/) (accessed on 16 June 2022) and its 3D structure was inferred using the iTASSER (https://zhanggroup.org/I-TASSER/) (accessed on 16 June 2022) webserver. Additionally, a mouse-encoded VDAC (PDB id 3EMN) was retrieved to compare and validate the interactions.
To prepare protein input files, all water molecules, ligands, and ions were removed, and polar hydrogens were added from the PDB file using AutoDock Vina (version 1.10) [72]. Finally, the files were saved in the pdb format for docking processes.
Three-dimensional structures of different chromenes and chromanones were either downloaded from the Webchem webpage (https://pubchem.ncbi.nlm.nih.gov/compound) (accessed on 16 June 2022) or drawn using ChemBiochem Drew Ultra (version 12). All the ligands were used in the structure data file (sdf) format.
Blind molecular docking was performed to investigate the putative binding sites of chromenes and chromanones to PGUs and VDACs. The CB-dock2 server was used for blind docking with its default settings. Docking validation was accomplished by re-docking the original ligand into the receptor’s active site and compared the binding sites. For each used ligand, the CB-dock2 was set to generate ten cavities for docking [73]. Following docking, the ligand with the lowest Vina score was considered credible and photographed.

4. Conclusions

In conclusion, the chemical synthesis of naturally occurring precocenes I, II, and III in addition to their analogous, was performed by the reaction of corresponding di and trihydroxybenzenes with α,β-unsaturated carboxylic acid under mild conditions from POCl3 and ZnCl2 or AlCl3. The benzopyrane ring closure produced the key intermediate dihydroxy-2,2-dimethyl-chroman-4-ones 4ac or monohydroxy-2,2-dimethyl-chroman-4-ones (compound 9). The selective O-alkylation on the benzene ring produced stepwise mono and di-O-alkoxy derivatives of chromanones 5af, 6af, and 10ab. The following reduction step by NaBH4 and in situ dehydration produced the corresponding 2H-1-chromene compounds 7af and 11ab. The poison feed protocol was used to evaluate the antifungal activity of two categories of compounds (i) chroman-4-one with mono and di-O-alkoxy analogues and (ii) 2H-1-chromenes against A. niger and R. solani. The tested compounds showed different antifungal attribution to changes in the type and position of the substituent in both categories of compounds. These results were supported by molecular docking. The synthesized chromene and chromanone compounds are eco-friendly compounds because they are not organo-metalic, organophosphoures, or halogenated compounds which could be harmful to the environment. More studies are required to evaluate the effect of chromenes and chromanones in both field experiments with economically important plant pathogenic fungi on the molecular level.

Supplementary Materials

The following supporting information can be downloaded at: https://www.mdpi.com/article/10.3390/molecules27217177/s1, Supporting Information file: NMR and MS Spectra a molecular docking table of the compounds. Table S1: Precocene and its derivatives interaction with polygalactouronases (PGU) encoded by A. niger and R. solani; and interaction with Volatge dependent anion channel (VDAC) encoded by mouse and F. solani; Figure S1: Mycelial growth inhibition of fungus A. niger by using different concentrations of 7a and 7b; Figure S2: Mycelial growth inhibition of fungus R. solani by using different concentrations of compounds 7b, 10a, 10b, and 11a; Figure S3: Mass spectrum of 1-(2′,3′,4′-trihydroxyphenyl)-3-methyl-1- oxo, buta-2-ene (3a); Figure S4: Proton chemical shift spectrum of 1-(2′,3′,4′-trihydroxyphenyl)-3-methyl-1- oxo, buta-2-ene (3a). (DMSO-d6, 500 MHz); Figure S5: Proton chemical shift spectrum of 1-(2′,4′,5′-trihydroxyphenyl)-3-methyl-1- oxo, buta-2-ene (3b). (DMSO-d6, 500 MHz); Figure S6: Mass spectrum of 7,8-dihydroxy 2,2-dimethyl chroman-4-one (4a); Figure S7 Proton chemical shift spectrum of 7,8-dihydroxy 2,2-dimethyl chroman-4-one (4a). (DMSO-d6, 500 MHz); Figure S8: Proton chemical shift spectrum 6,7-dihydroxy 2,2-dimethyl chroman-4-one (4b) (DMSO-d6, 500 MHz); Figure S9: Mass spectrum of 5,7-dihydroxy 2,2-dimethyl chroman-4-one (4c); Figure S10: Proton chemical shift spectrum of 5,7-dihydroxy 2,2-dimethyl chroman-4-one (4c). (DMSO-d6, 500 MHz); Figure S11: Mass spectrum of 7-methoxy, 8-hydroxy 2,2-dimethyl chroman-4-one (5a); Figure S12: Proton chemical shift spectrum of 7-methoxy, 8-hydroxy 2,2-dimethyl chroman-4-one (5a). (CDCl3, 500 MHz); Figure S13: Mass spectrum of 7-methoxy, 6-hydroxy 2,2-dimethyl chroman-4-one (5b); Figure S14: Proton chemical shift spectrum of 7-methoxy, 6-hydroxy 2,2-dimethyl chroman-4-one (5b). (CDCl3, 500 MHz); Figure S15: Mass spectrum of 7-methoxy, 5-hydroxy 2,2-dimethyl chroman-4-one (5c); Figure S16: Proton chemical shift spectrum of 7-methoxy, 5-hydroxy 2,2-dimethyl chroman-4-one (5c). (CDCl3, 500 MHz); Figure S17: Mass spectrum of 7-ethoxy, 8-hydroxy 2,2-dimethyl chroman-4-one (5d); Figure S18: Proton chemical shift spectrum of 7-ethoxy, 8-hydroxy 2,2-dimethyl chroman-4-one (5d). (CDCl3, 500 MHz); Figure S19: Mass spectrum of 7-ethoxy, 6-hydroxy 2,2-dimethyl chroman-4-one (5e); Figure S20: Proton chemical shift spectrum of 7-ethoxy, 6-hydroxy 2,2-dimethyl chroman-4-one (5e). (CDCl3, 500 MHz); Figure S21: Mass spectrum of 7-ethoxy, 5-hydroxy 2,2-dimethyl chroman-4-one (5f); Figure S22: Proton chemical shift spectrum of 7-ethoxy, 5-hydroxy 2,2-dimethyl chroman-4-one (5f). (CDCl3, 500 MHz); Figure S23: Mass spectrum of 7,8-dimethoxy, 2,2-dimethyl chroman-4-one (6a); Figure S24: Proton chemical shift spectrum of 7,8-dimethoxy, 2,2-dimethyl chroman-4-one (6a). (CDCl3, 500 MHz); Figure S25: Mass spectrum of 6,7-dimethoxy, 2,2-dimethyl chroman-4-one (6b); Figure S26: Proton chemical shift spectrum of 6,7-dimethoxy, 2,2-dimethyl chroman-4-one (6b). (CDCl3, 500 MHz); Figure S27: Mass spectrum of 5,7-dimethoxy 2, 2-dimethyl chroman-4-one (6c). (CDCl3, 500 MHz); Figure S28: Proton chemical shift spectrum of 5,7-dimethoxy 2,2-dimethyl chroman-4-one (6c). (CDCl3, 500 MHz); Figure S29: Mass spectrum of 7-ethoxy,8-mehoxy 2, 2-dimethyl chroman-4-one (6d); Figure S30: Proton chemical shift spectrum of 7-ethoxy,8-mehoxy 2, 2-dimethyl chroman-4-one (6d). (CDCl3, 500 MHz); Figure S31: Mass spectrum of 7-ethoxy,6-mehoxy 2, 2-dimethyl chroman-4-one (6e); Figure S32: Proton chemical shift spectrum of 7-ethoxy,6-mehoxy 2, 2-dimethyl chroman-4-one (6e). (CDCl3, 500 MHz); Figure S33: Mass spectrum of 7-ethoxy,5-mehoxy 2, 2-dimethyl chroman-4-one (6f); Figure S34: Proton chemical shift spectrum of 7-ethoxy,5-mehoxy 2, 2-dimethyl chroman-4-one (6f). (CDCl3, 500 MHz); Figure S35: Mass spectrum of 7,8-dimethoxy, 2,2-dimethyl 2H-1-chromene (7a); Figure S36: Proton chemical shift spectrum of 7,8-dimethoxy 2,2-dimethyl 2H-1-chromene (7a). (CDCl3, 500 MHz); Figure S37: Carbon chemical shift spectrum of 7,8-dimethoxy 2,2-dimethyl 2H-1-chromene (7a). (CDCl3, 500 MHz); Figure S38: Mass spectrum of 6,7-dimethoxy, 2,2-dimethyl 2H-1-chromene (7b) (Precocene II); Figure S39: Proton chemical shift spectrum of 6,7-dimethoxy 2,2-dimethyl 2H-1-chromene (7b) (Precocene II). (CDCl3, 500 MHz); Figure S40: Carbon chemical shift spectrum of 6,7-dimethoxy 2,2-dimethyl 2H-1-chromene (7b) (Precocene II). (CDCl3, 500 MHz); Figure S41: Mass spectrum of 5,7-dimethoxy, 2,2-dimethyl 2H-1-chromene (7c); Figure S42: Proton chemical shift spectrum of 5,7-dimethoxy 2,2-dimethyl 2H-1-chromene (7c) (CDCl3, 500 MHz); Figure S43: Mass spectrum of 7-ethoxy, 8-methoxy, 2,2-dimethyl 2H-1-chromene (7d); Figure S44: Proton chemical shift spectrum of 7-ethoxy, 8-methoxy 2,2-dimethyl 2H-1-chromene (7d). (CDCl3, 500 MHz); Figure S45: Carbon chemical shift spectrum of 7-ethoxy, 8-methoxy 2,2-dimethyl 2H-1-chromene (7d) (CDCl3, 500 MHz); Figure S46: Mass spectrum of 7-ethoxy, 6-methoxy, 2,2-dimethyl 2H-1-chromene (7e) (Precocene III); Figure S47: Proton chemical shift spectrum of 7-ethoxy, 6-methoxy, 2,2-dimethyl 2H-1-chromene (7e) (Precocene III) (CDCl3, 500 MHz); Figure S48: Carbon chemical shift spectrum of 7-ethoxy, 6-methoxy, 2,2-dimethyl 2H-1-chromene (7e) (Precocene III) (CDCl3, 500 MHz); Figure S49: Mass spectrum of 7-ethoxy, 5-methoxy, 2,2-dimethyl 2H-1-chromene (7f); Figure S50: Proton chemical shift spectrum of 7-ethoxy,5-methoxy, 2,2-dimethyl 2H-1-chromene (7f) (CDCl3, 500 MHz); Figure S51: Carbon chemical shift spectrum of 7-ethoxy,5-methoxy, 2,2-dimethyl 2H-1-chromene (7f) (CDCl3, 500 MHz); Figure S52: Mass spectrum of 1-(2′,4′-dihydroxyphenyl)-3-methyl-1- oxo-buta-2-ene (8); Figure S53: Proton chemical shift spectrum of 1-(2′,4′-dihydroxyphenyl)-3-methyl-1- oxo-buta-2-ene (8) (DMSO-d6, 500 MHz); Figure S54: Mass spectrum of 7-hydroxy 2,2-dimethyl chroman-4-one (9); Figure S55: Proton chemical shift spectrum of 7-hydroxy 2,2-dimethyl chroman- 4-one (9) (CDCl3, 500 MHz); Figure S56: Mass spectrum of 7-methoxy 2,2-dimethyl chroman-4-one (10a); Figure S57: Proton chemical shift spectrum of 7-methoxy 2,2-dimethyl chroman-4-one (10a) (CDCl3, 500 MHz); Figure S58: Mass spectrum of 7-ethoxy 2,2-dimethyl chroman-4-one (10b); Figure S59: Proton chemical shift spectrum of 7-ethoxy 2,2-dimethyl chroman-4-one (10b) (CDCl3, 500 MHz); Figure S60: Mass spectrum of 7-methoxy 2,2-dimethyl 2H-1-chromene (11a) (Precocene I); Figure S61: Proton chemical shift spectrum of 7-methoxy 2,2-dimethyl 2H-1-chromene (11a) (Precocene I) (CDCl3, 500 MHz); Figure S62: Carbon chemical shift spectrum of 7-methoxy 2,2-dimethyl 2H-1-chromene (11a) (Precocene I) (CDCl3, 500 MHz); Figure S63: Mass spectrum of 7-ethoxy 2,2-dimethyl 2H-1-chromene (11b); Figure S64: Proton chemical shift spectrum of 7-ethoxy 2,2-dimethyl 2H-1-chromene (11b) (CDCl3, 500 MHz); Figure S65: Carbon chemical shift spectrum of 7-ethoxy 2,2-dimethyl 2H-1-chromene (11b) (CDCl3, 500 MHz).

Author Contributions

Conceptualization, K.M.A.R. and E.S.A.B.; methodology, K.M.A.R., E.S.A.B. and Z.I.; writing—original draft preparation, K.M.A.R. and Z.I.; writing—review and editing, K.M.A.R., Z.I. and H.S.E.-B. All authors have read and agreed to the published version of the manuscript.

Funding

Deanship of Scientific Research, Vice Presidency for Graduate Studies and Scientific Research, King Faisal University, Saudi Arabia (GRANT 1826).

Data Availability Statement

All the data related to this study are mentioned in the manuscript and in the Supplementary Data.

Acknowledgments

The authors extend their appreciation to the Deanship of Scientific Research, Vice Presidency for Graduate Studies and Scientific Research, King Faisal University, Saudi Arabia, for supporting this research work through grant number GRANT 1826. The authors are also thankful to M. Adnan Shahid, University of Florida, FL, USA for critically reading the manuscript.

Conflicts of Interest

There are no conflict of interest among the authors.

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Scheme 1. Synthetic diagram of dialkoxy 2,2-dimethyl-2H-benzopyrane and monoal-koxy-2,2-dimethyl-2H-1-benzopyran. The red marked substituent R group is positioned on carbon atoms marked by red numbers.
Scheme 1. Synthetic diagram of dialkoxy 2,2-dimethyl-2H-benzopyrane and monoal-koxy-2,2-dimethyl-2H-1-benzopyran. The red marked substituent R group is positioned on carbon atoms marked by red numbers.
Molecules 27 07177 sch001
Figure 1. Molecular docking 3D binding models of the tested compounds against polygalactouronases encoded by A. niger (1CZF and 1NHC) and R. solani (KP896518 and KP896519).
Figure 1. Molecular docking 3D binding models of the tested compounds against polygalactouronases encoded by A. niger (1CZF and 1NHC) and R. solani (KP896518 and KP896519).
Molecules 27 07177 g001
Figure 2. Molecular docking 3D binding models of the tested compounds against voltage-dependent anion channels (VDACs) encoded by mouse and F. solani.
Figure 2. Molecular docking 3D binding models of the tested compounds against voltage-dependent anion channels (VDACs) encoded by mouse and F. solani.
Molecules 27 07177 g002
Table 1. Antifungal activity of different concentrations of synthesized compounds (3ab, 4ac, 5af, 6af, 7af, 8, 10ab, and 11ab) against Aspergillus niger on Czapek Dox agar (CDA) media, EC50, and EC90 after probit analyses.
Table 1. Antifungal activity of different concentrations of synthesized compounds (3ab, 4ac, 5af, 6af, 7af, 8, 10ab, and 11ab) against Aspergillus niger on Czapek Dox agar (CDA) media, EC50, and EC90 after probit analyses.
CompoundEC50
(µg × mL−1)
EC90
(µg × mL−1)
Reg. Equation(R2)
Amphotericin-B5.51916.99Log y = 3.4857x + 30.7620.9971
3a614.56833.66Log y = 9.6659x − 21.9540.9575
3b1023.291591.74Log y = 6.6711x − 15.080.9454
4a1664.005620.50Log y = 2.4214x − 2.79970.9464
4b1475.636939.33Log y = 1.9038x − 1.03310.9377
4c603.5519,561.23Log y = 0.8473x + 2.64390.9771
5a3033.3745,951.72Log y = 1.0844x + 1.22420.9196
5b630.806361.74Log y = 1.2753x + 1.42930.9646
5c125.705064.54Log y = 0.7974x + 3.3260.8440
5d624.901628.46Log y = 3.0345x − 3.48380.9931
5e318.101274.00Log y = 2.1241x − 0.31570.9992
5f681.087654.24Log y = 1.2188x + 1.54630.8207
6a527.481434.27Log y = 2.9464x − 3.02070.9395
6b1191.310,743.32Log y = 1.2878x + 1.03870.7784
6c398.321380.38Log y = 2.3377x − 1.07330.9229
6d410.601269.20Log y = 2.6116x − 1.82520.9499
6e582.133269.80Log y = 1.7078x + 0.27790.9578
6f617.902392.70Log y = 2.1769x − 1.07550.9350
7a97.18688.60Log y = 1.5051x + 2.00850.9859
7b
(Precocene II)
106.80809.01Log y = 1.4558x + 2.04660.7307
7c8398.20*Log y = 0.2704x + 3.93890.9999
7d170.58197,513.13Log y = 0.4178x + 4.06750.9995
7e
(Precocene III)
3963.08**Log y = 0.4881x + 3.24380.9842
7f4079.899371.57Log y = 3.5441x − 7.79650.2556
8356.98969.71Log y = 2.9493x − 2.52850.9175
91375.356760.83Log y = 1.8546x − 0.82050.9955
10a221.31799.7Log y = 2.2942x − 0.37990.9628
10b2.91×108***Log y = −0.0683x + 5.57810.0079
11a
(Precocene I)
584.582060.81Log y = 2.3392x − 1.47220.9945
11b1235.615613.94Log y = 1.9471x − 1.02020.8709
All data were corrected to the positive control. * The compounds with structure resemblance were grouped for comparison. * From Reg. Equation, Log C at 90% inhibition was 8.66 and EC90 = 4.5 × 108 µg × mL−1. ** From Reg. Equation, Log C at 90% inhibition was 6.2 and EC90 = 1.66 × 106 µg × mL−1. *** The EC90 of compound 10b could not be calculated from the given Reg. Equation.
Table 2. Antifungal activity of the selected compounds against Rhizoctonia solani on PDA, EC50, and EC90 after probit analysis.
Table 2. Antifungal activity of the selected compounds against Rhizoctonia solani on PDA, EC50, and EC90 after probit analysis.
EC50
(µg × mL−1)
EC90
(µg × mL−1)
Reg. Equation(R2)
Amphotericin-B2.7010.86Log y = 4.9381x + 36.3310.9920
3a123.77544.38Log y = 1.9898x + 0.83610.8622
876.62282.90Log y = 2.2562x + 0.74850.9878
5b616.601059.53Log y = 5.5307x − 10.4510.9566
5c46.88146.16Log y = 2.5918x + 0.66920.9432
5d558.101424.47Log y = 3.1454x − 3.63950.9809
5e318.191244.68Log y = 2.1608x − 0.40780.8465
5f334.29869.98Log y = 3.0815x − 2.77810.9826
6a593.10928.85Log y = 6.5702x − 13.220.9841
6c381.13765.89Log y = 4.2232x − 5.90040.9857
6d245.42406.91Log y = 5.8289x − 8.93050.9802
6e645.061654.44Log y = 3.1292x − 3.79180.9052
6f204.55720.24Log y = 2.3414x − 0.41050.9951
10a100.00191.90Log y = 4.5264x − 4.05410.989
10b59.85230.81Log y = 2.1836x + 1.11960.991
7a35.30199.94Log y = 1.6996x + 2.36940.9644
7b4.9474.69Log y = 1.0857x + 4.24620.8489
7f517.9021,160.64Log y = 0.7944x + 2.84380.991
11a10.392057.29Log y = 0.5573x + 4.43350.873
11b116.473530.73Log y = 0.8639x + 3.2150.9432
All data were corrected to the positive control.
Table 3. The reaction time and % of reaction yield of the synthesis of monoalkoxy, monohydroxy 2,2-dimethylchroman-4-ones (5af), dialkoxy, 2,2-dimethylchroman-4-ones (6af), and monoalkoxy, 2,2-dimethylchroman-4-ones (10ab).
Table 3. The reaction time and % of reaction yield of the synthesis of monoalkoxy, monohydroxy 2,2-dimethylchroman-4-ones (5af), dialkoxy, 2,2-dimethylchroman-4-ones (6af), and monoalkoxy, 2,2-dimethylchroman-4-ones (10ab).
Compound5a5b5c5d5e5f6a6b6c6d6e6f10a10b
Reaction Time (h)6386251015408860610
* % of Reaction Yield55.364.050.543.463.270.056.577.950.576.956.573.583.385.0
* Reaction yield= [actual yield (of purified compound)/theoretical yield] × 100.
Table 4. Reaction times required for reduction and dehydration of corresponding compounds (6af) and (11ab), as well as the % reaction yields.
Table 4. Reaction times required for reduction and dehydration of corresponding compounds (6af) and (11ab), as well as the % reaction yields.
CompoundReduction Time (h)Dehydration Time% Reaction Yield *
7a2.02.058.4
7b
(Precocene II)
1.51.587.3
7c2.52.572.0
7d1.53.080.0
7e
(Precocene III)
2.02.062.5
7f2.03.083.9
11a
(Precocene I)
3.03.053.0
11b4.03.061.6
* The reaction yield was calculated over the actual yield of the final step.
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Ramadan, K.M.A.; El-Beltagi, H.S.; Iqbal, Z.; Bendary, E.S.A. The Synthesis, Fungicidal Activity, and in Silico Study of Alkoxy Analogues of Natural Precocenes I, II, and III. Molecules 2022, 27, 7177. https://doi.org/10.3390/molecules27217177

AMA Style

Ramadan KMA, El-Beltagi HS, Iqbal Z, Bendary ESA. The Synthesis, Fungicidal Activity, and in Silico Study of Alkoxy Analogues of Natural Precocenes I, II, and III. Molecules. 2022; 27(21):7177. https://doi.org/10.3390/molecules27217177

Chicago/Turabian Style

Ramadan, Khaled M. A., Hossam S. El-Beltagi, Zafar Iqbal, and Eslam S. A. Bendary. 2022. "The Synthesis, Fungicidal Activity, and in Silico Study of Alkoxy Analogues of Natural Precocenes I, II, and III" Molecules 27, no. 21: 7177. https://doi.org/10.3390/molecules27217177

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