Next Article in Journal
Volatilome Analyses and In Vitro Antimicrobial Activity of the Essential Oils from Five South African Helichrysum Species
Next Article in Special Issue
Research Progress in Conversion of CO2 to Valuable Fuels
Previous Article in Journal
Caenorhabditis elegans as a Model Organism to Evaluate the Antioxidant Effects of Phytochemicals
Previous Article in Special Issue
Riley Oxidation of Heterocyclic Intermediates on Paths to Hydroporphyrins—A Review
 
 
Font Type:
Arial Georgia Verdana
Font Size:
Aa Aa Aa
Line Spacing:
Column Width:
Background:
Article

Weak Interactions and Conformational Changes in Core-Protonated A2- and Ax-Type Porphyrin Dications

by
Christopher J. Kingsbury
,
Keith J. Flanagan
,
Hans-Georg Eckhardt
,
Marc Kielmann
and
Mathias O. Senge
*
School of Chemistry, Trinity Biomedical Sciences Institute, Trinity College Dublin, The University of Dublin, Pearse St, 152-160 Dublin 2, Ireland
*
Author to whom correspondence should be addressed.
Molecules 2020, 25(14), 3195; https://doi.org/10.3390/molecules25143195
Submission received: 29 June 2020 / Revised: 9 July 2020 / Accepted: 10 July 2020 / Published: 13 July 2020

Abstract

Individual chemical motifs are known to introduce structural distortions to the porphyrin macrocycle, be it in the core or at the periphery of the macrocycle. The interplay when introducing two or more of these known structural motifs has been scarcely explored and is not necessarily simply additive; these structural distortions have a chance to compound or negate to introduce new structural types. To this end, a series of compounds with complementary peripheral (5,15-disubstitution) and core (acidification) substitution patterns were investigated. The single-crystal X-ray structures of 18 5,15-diphenylporphyrin, 5,15-diphenylporphyrindi-ium diacid, and related compounds are reported, including the first example of a 5,15-dialkylporphyrindi-ium. Normal-coordinate structural decomposition (NSD) analysis is used for a detailed analysis of the conformation of the porphyrin subunit within the crystal structures. An elongation of porphyrin macrocycles along the C5,C15- axis (B2g symmetry) is observed in all of the free base porphyrins and porphyrin dications; distance across the core is around 0.3 Å in the free base and diacid compounds, and more than doubled in 5,15-dipentylporphyrin and 5,15-dipentylporphyrindi-ium diacid. While the free base porphyrins are largely planar, a large out-of-plane distortion can be observed in 5,15-diphenylporphyrin diacids, with the expected “projective saddle” shape characteristic for such systems. The combination of these two distortions (B2u and B2g) from regular porphyrin structure results in a macrocycle best characterized in the chiral point-group D2. A rare structural type of a cis-hydrogen bond chelate is observed for 5,15-dipentylporphyrindi-ium diacid, which adopts an achiral C2v symmetry. Crystallographic data indicate that the protonated porphyrin core forms hydrogen bonding chelates (N-H⋯X⋯H-N) to counter-anions. Weaker interactions, such as induced intramolecular C-H⋯O interactions from the porphyrin periphery are described, with distances characteristic of charge-assisted interactions. This paper offers a conceptual framework for accessing porphyrin macrocycles with designable distortion and symmetry, useful for the selective perturbation of electronic states and a design-for-application approach to solid state porphyrin materials.
Keywords: porphyrins; conformational analysis; weak interactions; crystallography; nonplanar macrocycles porphyrins; conformational analysis; weak interactions; crystallography; nonplanar macrocycles
Graphical Abstract

Share and Cite

MDPI and ACS Style

Kingsbury, C.J.; Flanagan, K.J.; Eckhardt, H.-G.; Kielmann, M.; Senge, M.O. Weak Interactions and Conformational Changes in Core-Protonated A2- and Ax-Type Porphyrin Dications. Molecules 2020, 25, 3195. https://doi.org/10.3390/molecules25143195

AMA Style

Kingsbury CJ, Flanagan KJ, Eckhardt H-G, Kielmann M, Senge MO. Weak Interactions and Conformational Changes in Core-Protonated A2- and Ax-Type Porphyrin Dications. Molecules. 2020; 25(14):3195. https://doi.org/10.3390/molecules25143195

Chicago/Turabian Style

Kingsbury, Christopher J., Keith J. Flanagan, Hans-Georg Eckhardt, Marc Kielmann, and Mathias O. Senge. 2020. "Weak Interactions and Conformational Changes in Core-Protonated A2- and Ax-Type Porphyrin Dications" Molecules 25, no. 14: 3195. https://doi.org/10.3390/molecules25143195

APA Style

Kingsbury, C. J., Flanagan, K. J., Eckhardt, H.-G., Kielmann, M., & Senge, M. O. (2020). Weak Interactions and Conformational Changes in Core-Protonated A2- and Ax-Type Porphyrin Dications. Molecules, 25(14), 3195. https://doi.org/10.3390/molecules25143195

Article Metrics

Back to TopTop