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Keywords = soluble pyrophosphatase

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17 pages, 8835 KiB  
Essay
Overexpression of the EuSIP5 Gene to Improve Drought Resistance in Tobacco
by Yueling Lin, Xi Chen, Degang Zhao and Chao Li
Horticulturae 2024, 10(9), 1010; https://doi.org/10.3390/horticulturae10091010 - 23 Sep 2024
Viewed by 1187
Abstract
Soluble inorganic pyrophosphatase (s-PPase), a pyrophosphate hydrolase, is crucial for various physiological processes including plant growth and development, metabolic functions, and responses to abiotic stresses. However, research on s-PPase in woody plants is limited. To investigate the potential role of soluble inorganic pyrophosphatase [...] Read more.
Soluble inorganic pyrophosphatase (s-PPase), a pyrophosphate hydrolase, is crucial for various physiological processes including plant growth and development, metabolic functions, and responses to abiotic stresses. However, research on s-PPase in woody plants is limited. To investigate the potential role of soluble inorganic pyrophosphatase in Eucommia ulmoides Oliver (E. ulmoides) in drought stress, the E. ulmoides soluble inorganic pyrophosphatase 5 (EuSIP5) cDNA sequence was amplified via RT-PCR. A bioinformatic analysis suggested that EuSIP5 may be an unstable amphipathic protein predominantly localized in the cytoplasm. In E. ulmoides, the highest expression of the EuSIP5 gene was detected in the leaves and pericarp of male plants from April to October, and in the leaves in July and September. Under drought conditions, the expression of EuSIP5 in E. ulmoides leaves was significantly greater than that in the control. An overexpression vector containing EuSIP5 was constructed and introduced into Nicotiana tabacum L. cv. Xanthi (N. tabacum L.). Compared with that in wild-type (WT) plants, wilting in N. tabacum L. EuSIP5-overexpressing (OE) plants was delayed by 4 days under drought stress. Additionally, the expression levels of the drought-related genes DET2, CYP85A1, P5CS, ERF1, F-box, and NCED1 were elevated in the leaves of transgenic N. tabacum L. Moreover, the activities of the protective enzymes peroxidase, superoxide dismutase, and catalase were significantly greater, whereas the malondialdehyde content was lower in the transgenic plants than in the WT plants. These findings suggest that the introduction of the EuSIP5 gene into N. tabacum L. enhances drought-related gene expression, increases antioxidant capacity, and reduces oxidative stress damage, thereby improving drought resistance. Full article
(This article belongs to the Section Biotic and Abiotic Stress)
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15 pages, 2865 KiB  
Article
Effect of Near-Freezing Temperature Storage on the Quality and Organic Acid Metabolism of Apple Fruit
by Chang Shu, Bangdi Liu, Handong Zhao, Kuanbo Cui and Weibo Jiang
Agriculture 2024, 14(7), 1057; https://doi.org/10.3390/agriculture14071057 - 30 Jun 2024
Cited by 4 | Viewed by 1827
Abstract
Organic acids play critical roles in fruit physiological metabolism and sensory quality. However, the conventional storage of apple fruit at 0 ± 0.1 °C cannot maintain fruit acidity efficiently. This study investigated near-freezing temperature (NFT) storage for ‘Golden Delicious’ apples, and the quality [...] Read more.
Organic acids play critical roles in fruit physiological metabolism and sensory quality. However, the conventional storage of apple fruit at 0 ± 0.1 °C cannot maintain fruit acidity efficiently. This study investigated near-freezing temperature (NFT) storage for ‘Golden Delicious’ apples, and the quality parameters, organic acid content, and malate metabolism were studied. The results indicate that NFT storage at −1.7 ± 0.1 °C effectively maintained the postharvest quality of apple fruit when compared to traditional storage at 0 ± 0.1 °C. Fruit that underwent NFT storage showed a better appearance and lower respiratory rate, ethylene production, weight loss, and malondialdehyde (MDA) content but higher firmness and soluble solids content. Further, fruit after NFT storage contained higher titratable acid (18.75%), malate (51.61%), citrate (36.59%), and succinate (2.12%) content when compared to the control after 250 days. This was achieved by maintaining higher cytosolic NAD-dependent malate dehydrogenase (cyNAD-MDH), phosphoenolpyruvate carboxylase (PEPC), vacuolar H+-ATPase (V-ATPase), and vacuolar inorganic pyrophosphatase (V-PPase) activities that promote malate biosynthesis and accumulation while inhibiting enzyme activity that is responsible for malate decomposition, including phosphoenolpyruvate carboxylase kinase (PEPCK) as well as the cytosolic NAD phosphate-dependent malic enzyme (cyNADP-ME). Further, storage at NFTs maintained a higher expression of malate biosynthesis-related genes (MdcyNAD-MDH and MdPEPC) and transport-related genes (MdVHA and MdVHP) while suppressing malate consumption-related genes (MdcyME and MdPEPCK). The results demonstrate that NFT storage could be an effective application for apple fruit, which maintains postharvest quality and alleviates organic acid degradation. Full article
(This article belongs to the Special Issue Analysis of Agricultural Food Physicochemical and Sensory Properties)
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25 pages, 3028 KiB  
Article
H+-Translocating Membrane-Bound Pyrophosphatase from Rhodospirillum rubrum Fuels Escherichia coli Cells via an Alternative Pathway for Energy Generation
by Evgeniya A. Malykh, Liubov I. Golubeva, Ekaterina S. Kovaleva, Mikhail S. Shupletsov, Elena V. Rodina, Sergey V. Mashko and Nataliya V. Stoynova
Microorganisms 2023, 11(2), 294; https://doi.org/10.3390/microorganisms11020294 - 23 Jan 2023
Cited by 4 | Viewed by 2434
Abstract
Inorganic pyrophosphatases (PPases) catalyze an essential reaction, namely, the hydrolysis of PPi, which is formed in large quantities as a side product of numerous cellular reactions. In the majority of living species, PPi hydrolysis is carried out by soluble cytoplasmic [...] Read more.
Inorganic pyrophosphatases (PPases) catalyze an essential reaction, namely, the hydrolysis of PPi, which is formed in large quantities as a side product of numerous cellular reactions. In the majority of living species, PPi hydrolysis is carried out by soluble cytoplasmic PPase (S-PPases) with the released energy dissipated in the form of heat. In Rhodospirillum rubrum, part of this energy can be conserved by proton-pumping pyrophosphatase (H+-PPaseRru) in the form of a proton electrochemical gradient for further ATP synthesis. Here, the codon-harmonized gene hppaRru encoding H+-PPaseRru was expressed in the Escherichia coli chromosome. We demonstrate, for the first time, that H+-PPaseRru complements the essential native S-PPase in E. coli cells. 13C-MFA confirmed that replacing native PPase to H+-PPaseRru leads to the re-distribution of carbon fluxes; a statistically significant 36% decrease in tricarboxylic acid (TCA) cycle fluxes was found compared with wild-type E. coli MG1655. Such a flux re-distribution can indicate the presence of an additional method for energy generation (e.g., ATP), which can be useful for the microbiological production of a number of compounds, the biosynthesis of which requires the consumption of ATP. Full article
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12 pages, 2253 KiB  
Article
Use of Polyphosphates and Soluble Pyrophosphatase Activity in the Seaweed Ulva pseudorotundata
by Juan J. Vergara, Patricia Herrera-Pérez, Fernando G. Brun and José Lucas Pérez-Lloréns
Oceans 2020, 1(4), 343-354; https://doi.org/10.3390/oceans1040023 - 16 Dec 2020
Viewed by 2697
Abstract
The hydrolytic activity of different types of polyphosphates, and the induction of soluble pyrophosphatase (sPPase; EC 3.6.1.1) activity have been assessed in cell extracts of nutrient limited green seaweed Ulva pseudorotundata Cormaci, Furnari & Alongi subjected to different phosphorus regimes. Following a long [...] Read more.
The hydrolytic activity of different types of polyphosphates, and the induction of soluble pyrophosphatase (sPPase; EC 3.6.1.1) activity have been assessed in cell extracts of nutrient limited green seaweed Ulva pseudorotundata Cormaci, Furnari & Alongi subjected to different phosphorus regimes. Following a long period of nutrient limitation, the addition of different types of (poly)phosphates to artificial seawater enhanced growth rates on fresh weight and area, but not on dry weight bases. Chlorophyll and internal P content were affected by P supply. In contrast, internal soluble reactive P was kept low and was little affected by P additions. Soluble protein content increased in all treatments, as ammonium was added to prevent N limitation. The C:N:P atomic ratio revealed great changes depending on the nutrient regime along the experiment. Cell extracts of U. pseudorotundata were capable of hydrolyzing polyphosphates of different chain lengths (pyro, tripoly, trimeta, and polyphosphates) at high rates. The sPPase activity was kept very low in P limited plants. Following N and different kind of P additions, sPPase activity was kept low in the control, but slightly stimulated after 3 days when expressed on a protein basis. The highest activities were found at the end of the experiment under pyro and polyphosphate additions (7 days). The importance of alternative P sources to phosphate and the potential role of internal soluble pyrophosphatases in macroalgae are discussed. Full article
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16 pages, 3412 KiB  
Article
Transcriptome Analysis and Identification of Genes Associated with Starch Metabolism in Castanea henryi Seed (Fagaceae)
by Bin Liu, Ruqiang Lin, Yuting Jiang, Shuzhen Jiang, Yuanfang Xiong, Hui Lian, Qinmeng Zeng, Xuedie Liu, Zhong-Jian Liu and Shipin Chen
Int. J. Mol. Sci. 2020, 21(4), 1431; https://doi.org/10.3390/ijms21041431 - 20 Feb 2020
Cited by 27 | Viewed by 4283
Abstract
Starch is the most important form of carbohydrate storage and is the major energy reserve in some seeds, especially Castanea henryi. Seed germination is the beginning of the plant’s life cycle, and starch metabolism is important for seed germination. As a complex [...] Read more.
Starch is the most important form of carbohydrate storage and is the major energy reserve in some seeds, especially Castanea henryi. Seed germination is the beginning of the plant’s life cycle, and starch metabolism is important for seed germination. As a complex metabolic pathway, the regulation of starch metabolism in C. henryi is still poorly understood. To explore the mechanism of starch metabolism during the germination of C. henryi, we conducted a comparative gene expression analysis at the transcriptional level using RNA-seq across four different germination stages, and analyzed the changes in the starch and soluble sugar contents. The results showed that the starch content increased in 0–10 days and decreased in 10–35 days, while the soluble sugar content continuously decreased in 0–30 days and increased in 30–35 days. We identified 49 candidate genes that may be associated with starch and sucrose metabolism. Three ADP-glucose pyrophosphorylase (AGPase) genes, two nucleotide pyrophosphatase/phosphodiesterases (NPPS) genes and three starch synthases (SS) genes may be related to starch accumulation. Quantitative real-time polymerase chain reaction (qRT-PCR) was used to validate the expression levels of these genes. Our study combined transcriptome data with physiological and biochemical data, revealing potential candidate genes that affect starch metabolism during seed germination, and provides important data about starch metabolism and seed germination in seed plants. Full article
(This article belongs to the Section Molecular Plant Sciences)
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14 pages, 4000 KiB  
Article
A Soluble Pyrophosphatase Is Essential to Oogenesis and Is Required for Polyphosphate Metabolism in the Red Flour Beetle (Tribolium castaneum)
by Klébea Carvalho, Lupis Ribeiro, Jorge Moraes, José Roberto Da Silva, Evenilton P. Costa, Jackson Souza-Menezes, Carlos Logullo, Rodrigo Nunes Da Fonseca and Eldo Campos
Int. J. Mol. Sci. 2015, 16(4), 6631-6644; https://doi.org/10.3390/ijms16046631 - 24 Mar 2015
Cited by 2 | Viewed by 6787
Abstract
Polyphosphates have been found in all cell types examined to date and play diverse roles depending on the cell type. In eukaryotic organisms, polyphosphates have been mainly investigated in mammalian cells with few studies on insects. Some studies have demonstrated that a pyrophosphatase [...] Read more.
Polyphosphates have been found in all cell types examined to date and play diverse roles depending on the cell type. In eukaryotic organisms, polyphosphates have been mainly investigated in mammalian cells with few studies on insects. Some studies have demonstrated that a pyrophosphatase regulates polyphosphate metabolism, and most of them were performed on trypanosomatids. Here, we investigated the effects of sPPase gene knocked down in oogenesis and polyphosphate metabolism in the red flour beetle (Tribolium castaneum). A single sPPase gene was identified in insect genome and is maternally provided at the mRNA level and not restricted to any embryonic or extraembryonic region during embryogenesis. After injection of Tc-sPPase dsRNA, female survival was reduced to 15% of the control (dsNeo RNA), and egg laying was completely impaired. The morphological analysis by nuclear DAPI staining of the ovarioles in Tc-sPPase dsRNA-injected females showed that the ovariole number is diminished, degenerated oocytes can be observed, and germarium is reduced. The polyphosphate level was increased in cytoplasmic and nuclear fractions in Tc-sPPase RNAi; Concomitantly, the exopolyphosphatase activity decreased in both fractions. Altogether, these data suggest a role for sPPase in the regulation on polyphosphate metabolism in insects and provide evidence that Tc-sPPase is essential to oogenesis. Full article
(This article belongs to the Special Issue Advances in Reproductive Biology)
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