Search Results (14)

Osteomyelitis remains one of the most persistent challenges in orthopedic and trauma surgery, often requiring removal of infected bone tissue segments and leaving critical size defects. Reimplantation of sterilized autologous bone may combine optimal anatomical fit with biological compatibility. This study investigates sodium dodecyl sulfate (SDS) and ethylenediaminetetraacetic acid (EDTA) in combination with high hydrostatic pressure (HHP) as a physicochemical sterilization approach for Staphylococcus aureus and Staphylococcus epidermidis, two of the predominant pathogens associated with osteomyelitis. SDS/EDTA dose determination assays were performed prior to inactivation of different staphylococcal species via HHP with additives. Planktonic S. aureus ATCC 35556 and S. epidermidis ATCC 35984 and ATCC 12228 were exposed to HHP (250 MPa and 350 MPa) in pressure-transmitting media with SDS and EDTA. Furthermore, inactivation of S. aureus and S. epidermidis within biofilms on human trabecular bone cylinders was quantified based on logarithmic reduction factors and evaluated using scanning electron microscopy (SEM). Under HHP, planktonic S. aureus displayed pronounced pressure tolerance, whereas both S. epidermidis strains were fully inactivated at 350 MPa even in 0.9% saline. The addition of SDS/EDTA, which exhibited additive effects (fractional inhibitory concentration (FIC) = 0.7) in planktonic S. aureus, significantly enhanced pressure-induced killing, particularly in biofilms typically limiting sterilization efficiency. SEM revealed substantial membrane deformation and cell wall disruption following the treatment. HHP combined with SDS/EDTA effectively inactivated planktonic and biofilm-associated staphylococci, providing a promising strategy for safe autologous bone reimplantation after infection with the potential to improve clinical outcomes. Full article

Microalgae-based regulation is increasingly recognized as an eco-friendly strategy for improving water quality and nutrient management in intensive aquaculture systems. Although its effects on bacterial communities have been extensively investigated, its ecological impacts on higher trophic levels—particularly eukaryotic plankton communities across different size fractions—remain poorly understood. In this study, two indigenous microalgae species, Nannochloropsis oculata and Thalassiosira weissflogii, were inoculated into shrimp rearing water to elucidate the dynamics and interactions among microalgae, nutrient factors, and eukaryotic plankton communities across the small-sized (0.22–3 μm) and large-sized (>3 μm) fractions. The results revealed significant differences in the composition and diversity of both plankton size fractions under different microalgae treatments. Partial least squares path modeling indicated that microalgae influenced plankton communities both directly and indirectly through nutrient-mediated pathways. According to the neutral community model, microalgae inoculation was associated with an increased contribution of deterministic processes to community assembly. Variance partitioning further revealed that the large-sized community was primarily governed by microalgae, whereas the small-sized community was mainly shaped by rearing time, indicating size-dependent assembly mechanisms. The average variation degree and coefficient of variation, combined with effect-size analyses, indicated that N. oculata inoculation was associated with higher short-term community stability, an effect most pronounced in the large-sized fraction. Overall, these findings demonstrate that microalgal inoculation modulates the structure, assembly processes, and short-term stability of eukaryotic plankton communities, providing new insights into size-dependent, microalgae-driven assembly mechanisms and their potential to stabilize plankton communities for sustainable aquaculture management. Full article

Perennially ice-covered lakes in the McMurdo Dry Valleys, Antarctica, are shaped by permanent stratification, extreme oligotrophy, and salinity gradients, yet these features are vulnerable to climate-driven hydrologic change. Because phytoplankton and associated bacteria regulate carbon flow and nutrient cycling, understanding how algal–bacterial consortia respond to disturbance is key to predicting ecosystem change. We used enrichment cultures from Lakes Bonney and Fryxell to test responses to nutrient deprivation and salinity alteration, two perturbations relevant to climate-driven changes in hydrologic connectivity and expansion of open water moats. Autotrophic enrichments lacking added organic carbon were used to enrich algal–bacterial consortia dependent on photosynthetically derived substrates. Community responses were assessed with 16S rRNA amplicon sequencing of size-fractionated samples, allowing comparison of particle-associated and planktonic communities. Short-term nutrient limitation produced only limited shifts in community composition, indicating resistance to transient nutrient stress. However, bacterial communities were strongly structured by size fraction: particle-associated assemblages separated clearly from planktonic communities and were enriched in taxa linked to algal surfaces and polysaccharide-rich microhabitats, including Flavobacteriales, Sphingobacteriales, Rhizobiales, and Rhodobacterales. Salinity perturbation drove stronger restructuring of bacterial communities, with shallow Lake Bonney enrichments showing greater sensitivity than deeper communities. These findings suggest that algae-associated bacterial communities help structure Antarctic algal enrichment cultures and may influence microbial responses to climate-linked disturbance. Full article

Haptophytes are ubiquitous single-celled eukaryotic plankton in coastal and open oceans that play a key role in marine biogeochemical cycling. Understanding the size structure and community composition of active haptophytes is crucial for elucidating their diversity and ecological functions. This study investigated the diversity and community structure of pico- (0.2–3 μm) and nano-sized (3–20 μm) haptophytes in the surface waters of the western Pacific Ocean using high-throughput sequencing targeting the hypervariable V4 region of the 18S rRNA. The pico-sized community exhibited significantly higher diversity than the nano-sized community. Community composition varied significantly between size fractions, driven primarily by the genera Chrysochromulina and Syracosphaera. Furthermore, the nano-sized community was more strongly influenced by environmental variables than the pico-sized community, although neither size fraction displayed a clear coastal-to-open-ocean distribution pattern. Null and neutral community model analyses indicated that both size-fractionated communities were primarily regulated by stochastic processes, while deterministic processes exerted a greater influence on the nano-sized community. Co-occurrence network analysis revealed stronger interconnections and a higher number of keystone species within the nano-sized community. In both networks, intermediate taxa (relative abundances of 0.01% to 0.1%) exhibited the highest diversity and abundance among keystone species, highlighting their pivotal role in shaping the network structure and stability. Additionally, phylogenetic analyses revealed that while the majority of ZOTUs clustered with known taxa, multiple deep-branching, uncultured lineages were identified across both size fractions, indicating substantial uncharacterized genetic diversity. This study underscores the variability and hidden diversity of size-fractionated haptophyte community structures in oligotrophic open oceans, providing valuable insights into their functional significance in global biogeochemical cycles. Full article

In this paper, we describe a 13-year (2009–2022) dataset of legacy POP concentrations (DDT_tot and sumPCB₁₄ from 2016 isomers and congeners concentrations are also reported) in the planktonic crustaceans of Lake Maggiore (≥450 µm size fraction). The data were collected in the framework of a monitoring program finalized to assess the presence of pollutants in the lake biota, including zooplankton organisms directly preyed by fish. The data report both concentration of DDT_tot and sumPCB₁₄ in the zooplankton and the standing stock density and biomass of the population in each season. The dataset allows for detecting changes in the concentration over the long term and within a year, thus providing evidence for the seasonal and the plurennial variations in the presence of these pollutants in the lake. They also provide a basis for further studies aimed at modeling paths and the fate of persistent organic pollutants, for which the amount of toxicants stocked in the zooplankton compartment linked to fish is a crucial estimate. Full article

This article characterises viral fraction metatranscriptomes (smaller than 0.2 µm) from the pelagic zone of oligotrophic Lake Baikal (Russia). The study revealed the dominance of transcripts of DNA viruses: bacteriophages and algal viruses. We identified transcripts similar to Pithovirus sibericum, a nucleocytoplasmic large DNA virus (NCLDV) isolated from the permafrost region of Eastern Siberia. Among the families detected were RNA viruses assigned to Retroviridae, Metaviridae, Potyviridae, Astroviridae, and Closteroviridae. Using the PHROG, SEED subsystems databases, and the VOGDB, we indicated that the bulk of transcripts belong to the functional replication of viruses. In a comparative unweighted pair group method with arithmetic mean (UPGMA) analysis, the transcripts from Lake Baikal formed a separate cluster included in the clade with transcripts from other freshwater lakes, as well as marine and oceanic waters, while there was no separation based on the trophic state of the water bodies, the size of the plankton fraction, or salinity. Full article

Phytoplankton size structure has profound consequences on food-web organization and energy transfer. Presently, picocyanobacteria (size < 2 µm) represent a major fraction of the autotrophic plankton of Pampean lakes. Glyphosate is known to stimulate the development of picocyanobacteria capable of degrading the herbicide. Due to the worldwide adoption of glyphosate-resistant crops, herbicide usage has increased sharply since the mid-1990s. Unfortunately, there are very few studies (none for the Pampa region) reporting picocyanobacteria abundance before 2000. The proliferation of µm sized particles should decrease Secchi disc depth (ZSD). Therefore ZSD, conditional to chlorophyll-a, may serve as an indicator of picocyanobacteria abundance. We use generalized additive models (GAMs) to analyze a “validation” dataset consisting of 82 records of ZSD, chlorophyll-a, and picocyanobacteria abundance from two Pampean lakes surveys (2009 and 2015). In support of the hypothesis, ZSD was negatively related to picocyanobacteria after accounting for the effect of chlorophyll-a. We then fitted a “historical” dataset using hierarchical GAMs to compare ZSD conditional to chlorophyll-a, before and after 2000. We estimated that ZSD levels during 2000–2021 were, on average, only about half as deep as those during 1980–1999. We conclude that the adoption of glyphosate-resistant crops has stimulated outbreaks of picocyanobacteria populations, resulting in lower water transparency. Full article

Previous studies with Baltic Sea phytoplankton combining elevated seawater temperature with CO₂ revealed the importance of size trait-based analyses, in particular dividing the plankton into edible (>5 and <100 µm) and inedible (<5 and >100 µm) size classes for mesozoopankton grazers. While the edible phytoplankton responded predominantly negative to warming and the inedible group stayed unaffected or increased, independent from edibility most phytoplankton groups gained from CO₂. Because the ratio between edible and inedible taxa changes profoundly over seasons, we investigated if community responses can be predicted according to the prevailing composition of edible and inedible groups. We experimentally explored the combined effects of elevated temperatures and CO₂ concentrations on a late-summer Baltic Sea community. Total phytoplankton significantly increased in response to elevated CO₂ in particular in combination with temperature, driven by a significant gain of the inedible <5 µm fraction and large filamentous cyanobacteria. Large flagellates disappeared. The edible group was low as usual in summer and decreased with both factors due to enhanced copepod grazing and overall decline of small flagellates. Our results emphasize that the responses of summer communities are complex, but can be predicted by the composition and dominance of size classes and groups. Full article

Coastal marine ecosystems host complex microbial communities whose composition and metabolism are influenced by continental inputs and mesoscale properties of seawater masses. The identifying traits of the phytoplankton and bacteria such as biomass, size, shape and their metabolism related to organic matter production and degradation, recognized as indicators of the functioning of an ecosystem, were observed in the Gulf of Manfredonia (South Adriatic Sea, Italy) in late spring. This Gulf area is characterized by terrestrial inputs and mesoscale circulation influence such as coastal waters flowing southward from the North Adriatic and offshore waters interested by the Ionian Sea. Water samples were grouped in clusters (Coastal, Intermediate, Offshore and Deep Systems) according to the water column properties. Phytoplankton community biomass and composition, autotrophic and total prokaryotic abundances and microbial metabolism such as enzyme activity rates and prokaryotic heterotrophic production were analyzed to elucidate the trophic pathways with the objective to infer on the ecosystem status. As expected, size-fractionated phytoplankton biomass and production showed greater concentration in coastal waters with prevalence of the largest fractions (micro- and nano-) supported by the diatoms. Conversely, lower biomass and production were measured in all off-shore waters, mainly sustained by smallest fractions (nano-sized phytoflagellates and picophytoplankton). Total and autotrophic prokaryotic abundance decreased from coastal to offshore stations, inversely with respect to cell volume. Prokaryotic heterotrophic production was just below 50% compared to that of phytoplankton in all waters, evidencing an active biomass synthesis. High alkaline phosphatase and leucine aminopeptidase in coastal and offshore waters suggested the quick regeneration of Phosphorus and protein decomposition, respectively. Different levels of phytoplankton-bacteria association might provide a tool to define the ecological status of the studied system in the observed period; an approach to ecosystem assessment exportable to other coastal systems is proposed. Full article

Ancient lakes are among the most interesting models for evolution studies because their biodiversity is the result of a complex combination of migration and speciation. Here, we investigate the origin of single celled planktonic eukaryotes from the oldest lake in the world—Lake Baikal (Russia). By using 18S rDNA metabarcoding, we recovered 1414 Operational Taxonomic Units (OTUs) belonging to protists populating surface waters (1–50 m) and representing pico/nano-sized cells. The recovered communities resembled other lacustrine freshwater assemblages found elsewhere, especially the taxonomically unclassified protists. However, our results suggest that a fraction of Baikal protists could belong to glacial relicts and have close relationships with marine/brackish species. Moreover, our results suggest that rapid radiation may have occurred among some protist taxa, partially mirroring what was already shown for multicellular organisms in Lake Baikal. We found 16% of the OTUs belonging to potential species flocks in Stramenopiles, Alveolata, Opisthokonta, Archaeplastida, Rhizaria, and Hacrobia. Putative flocks predominated in Chrysophytes, which are highly diverse in Lake Baikal. Also, the 18S rDNA of a number of species (7% of the total) differed >10% from other known sequences. These taxa as well as those belonging to the flocks may be endemic to Lake Baikal. Overall, our study points to novel diversity of planktonic protists in Lake Baikal, some of which may have emerged in situ after evolutionary diversification. Full article

The input of new nutrients by upwelling in shelf waters, and the associated carbon and nitrogen fluxes, can be traced by their stable isotope signatures in organic matter. Here, we analyze the relationships between upwelling intensity and natural abundance of stable carbon and nitrogen isotopes in seston, sedimented particles, and four plankton size fractions (200 to 5000 µm) sampled monthly during 2010 and 2011 in a seasonal upwelling ecosystem. Upwelling modified the seasonal warming stratification by introducing cold and nutrient-rich waters in subsurface layers, enhancing chlorophyll-a and diatom abundance. Seston and sedimented particles were enriched in heavy nitrogen (but not carbon) isotopes linearly with upwelling intensity, indicating a primary effect of upwelling on phytoplankton production. In contrast, all plankton fractions were enriched in heavy carbon isotopes with upwelling, mainly due to the consumption of diatoms. These results confirm the differential effect of upwelling on nitrogen and carbon fluxes in the plankton food web. Direct effects of the new nitrogen inputs on phytoplankton are less evident with the increase of plankton size as nitrogen is repeatedly recycled, while the enriched carbon of plankton suggests the consumption of diatoms during upwelling. We provide linear equations to assess the influence of changes in upwelling intensity on nitrogen and carbon fluxes in seston and plankton in this ecosystem, as well as to estimate reference baseline values for food web studies. Full article

Understanding the influence of mesoscale and submesoscale features on the structure of phytoplankton is a key aspect in the assessment of their influence on marine biogeochemical cycling and cross-shore exchanges of plankton in Eastern Boundary Current Systems (EBCS). In this study, the spatio-temporal evolution of phytoplankton size classes (PSC) in surface waters associated with mesoscale eddies in the EBCS off central-southern Chile was analyzed. Chlorophyll-a (Chl-a) size-fractionated filtration (SFF) data from in situ samplings in coastal and coastal transition waters were used to tune a three-component (micro-, nano-, and pico-phytoplankton) model, which was then applied to total Chl-a satellite data (ESA OC-CCI product) in order to retrieve the Chl-a concentration of each PSC. A sea surface, height-based eddy-tracking algorithm was used to identify and track one cyclonic (sC) and three anticyclonic (ssAC1, ssAC2, sAC) mesoscale eddies between January 2014 and October 2015. Satellite estimates of PSC and in situ SFF Chl-a data were highly correlated (0.64 < r < 0.87), although uncertainty values for the microplankton fraction were moderate to high (50 to 100% depending on the metric used). The largest changes in size structure took place during the early life of eddies (~2 months), and no major differences in PSC between eddy center and periphery were found. The contribution of the microplankton fraction was ~50% (~30%) in sC and ssAC1 (ssAC2 and sAC) eddies when they were located close to the coast, while nanoplankton was dominant (~60–70%) and picoplankton almost constant (<20%) throughout the lifetime of eddies. These results suggest that the three-component model, which has been mostly applied in oceanic waters, is also applicable to highly productive coastal upwelling systems. Additionally, the PSC changes within mesoscale eddies obtained by this satellite approach are in agreement with results on phytoplankton size distribution in mesoscale and submesoscale features in this region, and are most likely triggered by variations in nutrient concentrations and/or ratios during the eddies’ lifetimes. Full article

Small aquatic ecosystems of the boreal zone are known to be most sensitive indicators of on-going environmental change as well as local anthropogenic pressure, while being highly vulnerable to external impacts. Compared to rather detailed knowledge of the evolution of large and small lakes in Scandinavia and Canada, and large lakes in Eurasia, highly abundant small boreal lakes of northwest Russia have received very little attention, although they may become important centers of attraction of growing rural population in the near future. Here we present the results of a multidisciplinary, multi-annual study of a small boreal humic lake of NW Russia. A shallow (3 m) and a deep (16 m) site of this lake were regularly sampled for a range of chemical and biological parameters. Average multi-daily, summer-time values of the epilimnion (upper oxygenated) layer of the lake provided indications of possible trends in temperature, nutrients, and bacterio-plankton concentration that revealed the local pollution impact in the shallow zone and overall environmental trend in the deep sampling point of the lake. Organic phosphorus, nitrate, and lead were found to be most efficient tracers of local anthropogenic pollution, especially visible in the surface layer of the shallow site of the lake. Cycling of trace elements between the epilimnion and hypolimnion is tightly linked to dissolved organic matter speciation and size fractionation due to the dominance of organic and organo-ferric colloids. The capacity of lake self-purification depends on the ratio of primary productivity to mineralization of organic matter. This ratio remained >1 both during winter and summer periods, which suggests a high potential of lake recovery from the input of allochthonous dissolved organic matter and local anthropogenic pollution. Full article

Cyanobacteria of a picoplanktonic cell size (0.2 to 2.0 µm) are common organisms of both freshwater and marine ecosystems. However, due to their small size and relatively short study history, picoplanktonic cyanobacteria, in contrast to the microplanktonic cyanobacteria, still remains a poorly studied fraction of plankton. So far, only little information on picocyanobacteria toxicity has been reported, while the number of reports concerning their presence in ecosystems is increasing. Thus, the issue of picocyanobacteria toxicity needs more researchers’ attention and interest. In this report, we present information on the current knowledge concerning the picocyanobacteria toxicity, as well as their harmfulness and problems they can cause. Full article