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Keywords = quartet structure generation set

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21 pages, 3755 KiB  
Article
Effect of Pore-Scale Anisotropic and Heterogeneous Structure on Rarefied Gas Flow in Three-Dimensional Porous Media
by Wenqiang Guo, Jinshan Zhao, Gang Wang, Ming Fang and Ke Zhu
Fluids 2025, 10(7), 175; https://doi.org/10.3390/fluids10070175 - 3 Jul 2025
Viewed by 250
Abstract
Porous media have great application prospects, such as transpiration cooling for the aerospace industry. The main challenge for the prediction of gas permeability includes the geometrical complexity and high Knudsen number of gas flow at the nano-scale to micro-scale, leading to failure of [...] Read more.
Porous media have great application prospects, such as transpiration cooling for the aerospace industry. The main challenge for the prediction of gas permeability includes the geometrical complexity and high Knudsen number of gas flow at the nano-scale to micro-scale, leading to failure of the conventional Darcy’s law. To address these issues, the Quartet Structure Generation Set (QSGS) method is improved to construct anisotropic and heterogeneous three-dimensional porous media, and the lattice Boltzmann method (LBM) with the multiple relaxation time (MRT) collision operator is adopted. Using MRT-LBM, the pressure boundary conditions at the inlet and outlet are firstly dealt with using the moment-based boundary conditions, demonstrating good agreement with the analytical solutions in two benchmark tests of three-dimensional Poiseuille flow and flow through a body-centered cubic array of spheres. Combined with the Bosanquet-type effective viscosity model and Maxwellian diffuse reflection boundary condition, the gas flow at high Knudsen (Kn) numbers in three-dimensional porous media is simulated to study the relationship between pore-scale anisotropy, heterogeneity and Kn, and permeability and micro-scale slip effects in porous media. The slip factor is positively correlated with the anisotropic factor, which means that the high Kn effect is stronger in anisotropic structures. There is no obvious correlation between the slip factor and heterogeneity factor. Full article
(This article belongs to the Section Flow of Multi-Phase Fluids and Granular Materials)
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22 pages, 17362 KiB  
Article
Numerical Investigation of Transmission and Sealing Characteristics of Salt Rock, Limestone, and Sandstone for Hydrogen Underground Energy Storage in Ontario, Canada
by Peichen Cai and Shunde Yin
Mining 2025, 5(1), 12; https://doi.org/10.3390/mining5010012 - 5 Feb 2025
Cited by 1 | Viewed by 729
Abstract
With the accelerating global transition to clean energy, underground hydrogen storage (UHS) has gained significant attention as a flexible and renewable energy storage technology. Ontario, Canada, as a pioneer in energy transition, offers substantial underground storage potential, with its geological conditions of salt, [...] Read more.
With the accelerating global transition to clean energy, underground hydrogen storage (UHS) has gained significant attention as a flexible and renewable energy storage technology. Ontario, Canada, as a pioneer in energy transition, offers substantial underground storage potential, with its geological conditions of salt, limestone, and sandstone providing diverse options for hydrogen storage. However, the hydrogen transport characteristics of different rock media significantly affect the feasibility and safety of energy storage projects, warranting in-depth research. This study simulates the hydrogen flow and transport characteristics in typical energy storage digital rock core models (salt rock, limestone, and sandstone) from Ontario using the improved quartet structure generation set (I-QSGS) and the lattice Boltzmann method (LBM). The study systematically investigates the distribution of flow velocity fields, directional characteristics, and permeability differences, covering the impact of hydraulic changes on storage capacity and the mesoscopic flow behavior of hydrogen in porous media. The results show that salt rock, due to its dense structure, has the lowest permeability and airtightness, with extremely low hydrogen transport velocity that is minimally affected by pressure differences. The microfracture structure of limestone provides uneven transport pathways, exhibiting moderate permeability and fracture-dominated transport characteristics. Sandstone, with its higher porosity and good connectivity, has a significantly higher transport rate compared to the other two media, showing local high-velocity preferential flow paths. Directional analysis reveals that salt rock and sandstone exhibit significant anisotropy, while limestone’s transport characteristics are more uniform. Based on these findings, salt rock, with its superior sealing ability, demonstrates the best hydrogen storage performance, while limestone and sandstone also exhibit potential for storage under specific conditions, though further optimization and validation are required. This study provides a theoretical basis for site selection and operational parameter optimization for underground hydrogen storage in Ontario and offers valuable insights for energy storage projects in similar geological settings globally. Full article
(This article belongs to the Special Issue Envisioning the Future of Mining, 2nd Edition)
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19 pages, 9044 KiB  
Article
An Efficient Method for Generating a Super-Sized and Heterogeneous Pore-Throat Network Model of Rock
by Chunlei Yu, Wenbin Chen, Junjian Li and Shuoliang Wang
Appl. Sci. 2025, 15(3), 1047; https://doi.org/10.3390/app15031047 - 21 Jan 2025
Viewed by 834
Abstract
The super-sized pore-throat network model can reflect both microscopic pore characteristics and macroscopic heterogeneity and is excellent in describing cross-scale flow fields. At present, there is no algorithm that can generate a micro pore-throat network model at a macro reservoir scale. This study [...] Read more.
The super-sized pore-throat network model can reflect both microscopic pore characteristics and macroscopic heterogeneity and is excellent in describing cross-scale flow fields. At present, there is no algorithm that can generate a micro pore-throat network model at a macro reservoir scale. This study examines algorithms for super-sized pore-throat network reconstruction using actual core sample data. It conducts a random simulation of mineral growth and dissolution under the constraints of four microscopic pore structure parameters: porosity, coordination number, pore radius, and throat radius. This approach achieves high-precision, super-sized, and regional pore-throat network modeling. Comparative analysis shows that these four parameters effectively guide the random growth process of super-sized pore-throat networks. The overall similarity between the generated pore-throat network model and real core samples is 88.7% on average. In addition, the algorithm can partition and control the generation of pore-throat networks according to sedimentary facies. The 100-megapixel model with 85,000 pores was generated in 455.9 s. This method can generate cross-scale models and provides a basis for cross-scale modeling in physical simulation experiments and numerical simulations. Full article
(This article belongs to the Special Issue Development and Production of Oil Reservoirs)
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13 pages, 8674 KiB  
Article
Numerical Study on Permeability of Reconstructed Porous Concrete Based on Lattice Boltzmann Method
by Danni Zhao, Jiangbo Xu, Xingang Wang, Qingjun Guo, Yangcheng Li, Zemin Han, Yifan Liu, Zixuan Zhang, Jiajun Zhang and Runtao Sun
Buildings 2024, 14(4), 1182; https://doi.org/10.3390/buildings14041182 - 22 Apr 2024
Cited by 2 | Viewed by 1659
Abstract
The reconstruction of the porous media model is crucial for researching the mesoscopic seepage characteristics of porous concrete. Based on a self-compiled MATLAB program, a porous concrete model was modeled by controlling four parameters (distribution probability, growth probability, probability density, and porosity) with [...] Read more.
The reconstruction of the porous media model is crucial for researching the mesoscopic seepage characteristics of porous concrete. Based on a self-compiled MATLAB program, a porous concrete model was modeled by controlling four parameters (distribution probability, growth probability, probability density, and porosity) with clear physical meanings using a quartet structure generation set (QSGS) along with the lattice Boltzmann method (LBM) to investigate permeability. The rationality of the numerical model was verified through Poiseuille flow theory. The results showed that the QSGS model exhibited varied pore shapes and disordered distributions, resembling real porous concrete. Seepage velocity distribution showed higher values in larger pores, with flow rates reaching up to 0.012 lattice point velocity. The permeability–porosity relationship demonstrated high linearity (the Pearson correlation coefficient is 0.92), consistent with real porous concrete behavior. The integration of QSGS-LBM represents a novel approach, and the research results can provide new ideas and new means for subsequent research on the permeability of porous concrete or similar porous medium materials. Full article
(This article belongs to the Special Issue Foundation Treatment and Building Structural Performance Enhancement)
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23 pages, 11029 KiB  
Article
A High-Similarity Modeling Method for Low-Porosity Porous Material and Its Application in Bearing Cage Self-Lubrication Simulation
by Jiannan Sun, Ke Yan, Yongsheng Zhu and Jun Hong
Materials 2021, 14(18), 5449; https://doi.org/10.3390/ma14185449 - 21 Sep 2021
Cited by 5 | Viewed by 4814
Abstract
The porous oil-containing cage achieves the storage, spillage, and suction of lubricating oil by its micro-pore structure, thus ensuring the self-lubricating performance of the bearing. Carrying out fast and accurate modeling of the cage microscopic pore structure is the key to the analysis [...] Read more.
The porous oil-containing cage achieves the storage, spillage, and suction of lubricating oil by its micro-pore structure, thus ensuring the self-lubricating performance of the bearing. Carrying out fast and accurate modeling of the cage microscopic pore structure is the key to the analysis of the self-lubricating mechanism of bearings. In response to the issues where current modeling methods of porous materials have a low similarity of pore distribution, morphology, structure, and size characteristics, and the transition of pore surfaces is sharp, this paper proposed a modeling method of a highly similar micro-pore structure based on the idea of median filtering, the quartet structure generation set (QSGS), and the slice method. By extracting and analyzing the pore characteristics of the porous model and comparing them with the experimental results of CT scanning, the advantages of the modeling method in terms of morphology and pore connectivity were verified. Finally, by carrying out simulation analysis of the centrifugal force of oil splashing and capillary oil absorption on the constructed model by combining the parameters of porous structures such as porosity and tortuosity, the advantages of the modeling method in the construction of the porous model and multi-physical field analysis were further verified. Full article
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13 pages, 4345 KiB  
Article
Catalytic Activities of Multimeric G-Quadruplex DNAzymes
by Raphael I. Adeoye, Dunsin S. Osalaye, Theresia K. Ralebitso-Senior, Amanda Boddis, Amanda J. Reid, Amos A. Fatokun, Andrew K. Powell, Sylvia O. Malomo and Femi J. Olorunniji
Catalysts 2019, 9(7), 613; https://doi.org/10.3390/catal9070613 - 19 Jul 2019
Cited by 18 | Viewed by 6687
Abstract
G-quadruplex DNAzymes are short DNA aptamers with repeating G4 quartets bound in a non-covalent complex with hemin. These G4/Hemin structures exhibit versatile peroxidase-like catalytic activity with a wide range of potential applications in biosensing and biotechnology. Current efforts are aimed at gaining a [...] Read more.
G-quadruplex DNAzymes are short DNA aptamers with repeating G4 quartets bound in a non-covalent complex with hemin. These G4/Hemin structures exhibit versatile peroxidase-like catalytic activity with a wide range of potential applications in biosensing and biotechnology. Current efforts are aimed at gaining a better understanding of the molecular mechanism of DNAzyme catalysis as well as devising strategies for improving their catalytic efficiency. Multimerisation of discrete units of G-quadruplexes to form multivalent DNAzyes is an emerging design strategy aimed at enhancing the peroxidase activities of DNAzymes. While this approach holds promise of generating more active multivalent G-quadruplex DNAzymes, few examples have been studied and it is not clear what factors determine the enhancement of catalytic activities of multimeric DNAzymes. In this study, we report the design and characterisation of multimers of five G-quadruplex sequences (AS1411, Bcl-2, c-MYC, PS5.M and PS2.M). Our results show that multimerisation of G-quadruplexes that form parallel structure (AS1411, Bcl-2, c-MYC) leads to significant rate enhancements characteristic of cooperative and/or synergistic interactions between the monomeric units. In contrast, multimerisation of DNA sequences that form non-parallel structures (PS5.M and PS2.M) did not exhibit similar levels of synergistic increase in activities. These results show that design of multivalent G4/Hemin structures could lead to a new set of versatile and efficient DNAzymes with enhanced capacity to catalyse peroxidase-mimic reactions. Full article
(This article belongs to the Special Issue Biocatalytic Applications in Biotechnology)
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18 pages, 2183 KiB  
Article
Structure-Based Virtual Screening of Novel Natural Alkaloid Derivatives as Potential Binders of h-telo and c-myc DNA G-Quadruplex Conformations
by Roberta Rocca, Federica Moraca, Giosuè Costa, Stefano Alcaro, Simona Distinto, Elias Maccioni, Francesco Ortuso, Anna Artese and Lucia Parrotta
Molecules 2015, 20(1), 206-223; https://doi.org/10.3390/molecules20010206 - 24 Dec 2014
Cited by 28 | Viewed by 10160
Abstract
Several ligands can bind to the non-canonical G-quadruplex DNA structures thereby stabilizing them. These molecules can act as effective anticancer agents by stabilizing the telomeric regions of DNA or by regulating oncogene expression. In order to better interact with the quartets of G-quadruplex [...] Read more.
Several ligands can bind to the non-canonical G-quadruplex DNA structures thereby stabilizing them. These molecules can act as effective anticancer agents by stabilizing the telomeric regions of DNA or by regulating oncogene expression. In order to better interact with the quartets of G-quadruplex structures, G-binders are generally characterized by a large aromatic core involved in π-π stacking. Some natural flexible cyclic molecules from Traditional Chinese Medicine have shown high binding affinity with G-quadruplex, such as berbamine and many other alkaloids. Using the structural information available on G-quadruplex structures, we performed a high throughput in silico screening of commercially available alkaloid derivative databases by means of a structure-based approach based on docking and molecular dynamics simulations against the human telomeric sequence d[AG3(T2AG3)3] and the c-myc promoter structure. We identified 69 best hits reporting an improved theoretical binding affinity with respect to the active set. Among them, a berberine derivative, already known to remarkably inhibit telomerase activity, was related to a better theoretical affinity versus c-myc. Full article
(This article belongs to the Special Issue Alkaloids: Novel Therapeutic Perspectives)
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