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23 pages, 3216 KiB  
Article
Spatial Prediction and Environmental Response of Skipjack Tuna Resources from the Perspective of Geographic Similarity: A Case Study of Purse Seine Fisheries in the Western and Central Pacific
by Shuyang Feng, Xiaoming Yang, Menghao Li, Zhoujia Hua, Siquan Tian and Jiangfeng Zhu
J. Mar. Sci. Eng. 2025, 13(8), 1444; https://doi.org/10.3390/jmse13081444 - 29 Jul 2025
Viewed by 278
Abstract
Skipjack tuna constitutes a crucial fishery resource in the Western and Central Pacific Ocean (WCPO) purse seine fishery, with high economic value and exploitation potential. It also serves as an essential subject for studying the interaction between fishery resource dynamics and marine ecosystems, [...] Read more.
Skipjack tuna constitutes a crucial fishery resource in the Western and Central Pacific Ocean (WCPO) purse seine fishery, with high economic value and exploitation potential. It also serves as an essential subject for studying the interaction between fishery resource dynamics and marine ecosystems, as its resource abundance is significantly influenced by marine environmental factors. Skipjack tuna can be categorized into unassociated schools and associated schools, with the latter being predominant. Overfishing of the associated schools can adversely affect population health and the ecological environment. In-depth exploration of the spatial distribution responses of these two fish schools to environmental variables is significant for the rational development and utilization of tuna resources and for enhancing the sustainability of fishery resources. In sparsely sampled and complex marine environments, geographic similarity methods effectively predict tuna resources by quantifying local fishing ground environmental similarities. This study introduces geographical similarity theory. This study focused on 1° × 1° fishery data (2004–2021) released by the Western and Central Pacific Fisheries Commission (WCPFC) combined with relevant marine environmental data. We employed Geographical Convergent Cross Mapping (GCCM) to explore significant environmental factors influencing catch and variations in causal intensity and employed a Geographically Optimal Similarity (GOS) model to predict the spatial distribution of catch for the two types of tuna schools. The research findings indicate that the following: (1) Sea surface temperature (SST), sea surface salinity (SSS), and net primary productivity (NPP) are key factors in GCCM model analysis, significantly influencing the catch of two fish schools. (2) The GOS model exhibits higher prediction accuracy and stability compared to the Generalized Additive Model (GAM) and the Basic Configuration Similarity (BCS) model. R2 values reaching 0.656 and 0.649 for the two types of schools, respectively, suggest that the geographical similarity method has certain applicability and application potential in the spatial prediction of fishery resources. (3) Uncertainty analysis revealed more stable predictions for unassociated schools, with 72.65% of the results falling within the low-uncertainty range (0.00–0.25), compared to 52.65% for associated schools. This study, based on geographical similarity theory, elucidates differential spatial responses of distinct schools to environmental factors and provides a novel approach for fishing ground prediction. It also provides a scientific basis for the dynamic assessment and rational exploitation and utilization of skipjack tuna resources in the Pacific Ocean. Full article
(This article belongs to the Section Marine Biology)
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22 pages, 2337 KiB  
Article
Analyzing the Causation of Collision Accidents Between Merchant and Fishing Vessels in China’s Coastal Waters by Integrating Association Rules and Complex Networks
by Qiaoling Du, Xiaoxue Ma, Ruiwen Zhang and Weiliang Qiao
J. Mar. Sci. Eng. 2025, 13(6), 1086; https://doi.org/10.3390/jmse13061086 - 29 May 2025
Viewed by 335
Abstract
The frequent occurrence of collision accidents between merchant and fishing vessels in China’s offshore waters not only threatens human lives and property, but also disrupts shipping and fishing activities and may cause marine environmental pollution. To effectively reduce such accidents and increase maritime [...] Read more.
The frequent occurrence of collision accidents between merchant and fishing vessels in China’s offshore waters not only threatens human lives and property, but also disrupts shipping and fishing activities and may cause marine environmental pollution. To effectively reduce such accidents and increase maritime safety in Chinese coastal waters, this study integrates association rules with complex networks to develop a directed weighted network of causal factors. Grounded theory and the Human Factors Analysis and Classification System (HFACS) are applied to identify and categorize causal factors from 152 collision accident investigation reports. Potential causal relationships are mined using the association rule, which is then applied to construct the causal network. Finally, the topological characteristics of the network are analyzed. The results reveal that serious negligence in lookout, failure to assess collision risks properly, and failure to adopt a safe speed significantly impact collision accidents. These findings highlight the necessity of implementing targeted preventive measures to address critical factors. This study provides valuable insights for maritime stakeholders to develop effective strategies. Full article
(This article belongs to the Special Issue Recent Advances in Maritime Safety and Ship Collision Avoidance)
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26 pages, 5240 KiB  
Article
Extending LoRaWAN: Mesh Architecture and Performance Analysis for Long-Range IoT Connectivity in Maritime Environments
by Nuno Cruz, Carlos Mendes, Nuno Cota, Gonçalo Esteves, João Pinelo, João Casaleiro, Rafael Teixeira and Leonor Lobo
Systems 2025, 13(5), 381; https://doi.org/10.3390/systems13050381 - 15 May 2025
Viewed by 765
Abstract
A LoRaWAN application architecture comprises three functional components: (i) nodes, which convert and wirelessly transmit data as LoRaWAN messages; (ii) gateways, which receive and forward these transmissions; and (iii) network servers, which process the received data for application delivery. The nodes convert data [...] Read more.
A LoRaWAN application architecture comprises three functional components: (i) nodes, which convert and wirelessly transmit data as LoRaWAN messages; (ii) gateways, which receive and forward these transmissions; and (iii) network servers, which process the received data for application delivery. The nodes convert data into LoRaWAN messages and transmit them wirelessly with the hope that one or more LoRaWAN gateway will receive the messages successfully. Then, the gateways pass on the received messages to a distant network server, where various processing steps occur before the messages are forwarded to the end application. If none of the gateways can receive the messages, then they will be lost. Although this default behaviour is suitable for some applications, there are others where ensuring messages are successfully delivered at a higher rate would be helpful. One such scenario is the application in this paper: monitoring maritime vessels and fishing equipment in offshore environments characterised by intermittent or absent shore connectivity. To address this challenge, the Custodian project was initiated to develop a maritime monitoring solution with enhanced connectivity capabilities. Two additional features are especially welcome in this scenario. The most important feature is the transmission of messages created in offshore areas to end users who are offshore, regardless of the unavailability of the ground network server. An example would be fishermen who are offshore and wish to position their fishing equipment, also offshore, based on location data transmitted from nodes via LoRaWAN, even when both entities are far away from the mainland. The second aspect concerns the potential use of gateway-to-gateway communications, through gateways on various ships, to transmit messages to the coast. This setup enables fishing gear and fishing vessels to be monitored from the coast, even in the absence of a direct connection. The functional constraints of conventional commercial gateways necessitated the conceptualisation and implementation of C-Mesh, a novel relay architecture that extends LoRaWAN functionality beyond standard protocol implementations. The C-Mesh integrates with the Custodian ecosystem, alongside C-Beacon and C-Point devices, while maintaining transparent compatibility with standard LoRaWAN infrastructure components through protocol-compliant gateway emulation. Thus, compatibility with both commercially available nodes and gateways and those already in deployment is guaranteed. We provide a comprehensive description of C-Mesh, describing its hardware architecture (communications, power, and self-monitoring abilities) and data processing ability (filtering duplicate messages, security, and encryption). Sea trials carried out on board a commercial fishing vessel in Sesimbra, Portugal, proved C-Mesh to be effective. Location messages derived from fishing gear left at sea were received by an end user aboard the fishing vessel, independently of the network server on land. Additionally, field tests demonstrated that a single C-Mesh deployment functioning as a signal repeater on a vessel with an antenna elevation of 15m above sea level achieved a quantifiable coverage extension of 13 km (representing a 20% increase in effective transmission range), demonstrating the capacity of C-Mesh to increase LoRaWAN’s coverage. Full article
(This article belongs to the Special Issue Integration of Cybersecurity, AI, and IoT Technologies)
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23 pages, 6633 KiB  
Article
Investigating Catching Hotspots of Fishing Boats: A Framework Using BeiDou Big Data and Deep Learning Algorithms
by Fen Wang, Xingyu Liu, Tanxue Chen, Hongxiang Feng and Qin Lin
J. Mar. Sci. Eng. 2025, 13(5), 905; https://doi.org/10.3390/jmse13050905 - 1 May 2025
Viewed by 431
Abstract
Illegal, unreported, and unregulated (IUU) fishing significantly threatens marine ecosystems, disrupts the ecological balance of the oceans, and poses serious challenges to global fisheries management. This contribution presents the efficacy of China’s summer fishing moratorium using BeiDou vessel monitoring system (VMS) data from [...] Read more.
Illegal, unreported, and unregulated (IUU) fishing significantly threatens marine ecosystems, disrupts the ecological balance of the oceans, and poses serious challenges to global fisheries management. This contribution presents the efficacy of China’s summer fishing moratorium using BeiDou vessel monitoring system (VMS) data from 2805 fishing vessels in the East China Sea and Yellow Sea, integrated with a deep learning framework for spatiotemporal analysis. A preprocessing protocol addressing multidimensional noise in raw VMS datasets was developed, incorporating velocity normalization and gap filling to ensure data reliability. The CNN-BiLSTM hybrid model emerged as optimal for fishing behavior classification, achieving 89.98% accuracy and an 87.72% F1 score through synergistic spatiotemporal feature extraction. Spatial analysis revealed significant policy-driven reductions in fishing intensity during the moratorium (May–August), with hotspot areas suppressed to sporadic coastal distributions. However, concentrated vessel activity in Zhejiang’s nearshore waters suggested potential illegal fishing. Post-moratorium, fishing hotspots expanded explosively, peaking in October and clustering in Yushan, Zhoushan, and Yangtze River estuary fishing grounds. Quarterly patterns identified autumn–winter 2021 as peak fishing seasons, with hotspots covering >80% of East China Sea grounds. The framework enables real-time fishing state detection and adaptive spatial management via dynamic closure policies. The findings underscore the need for strengthened surveillance during moratoriums and post-ban catch regulation to mitigate overfishing risks. Full article
(This article belongs to the Special Issue Resilience and Capacity of Waterway Transportation)
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21 pages, 3211 KiB  
Article
Life History Traits and Fishery Dynamics of Speckled Shrimp, Metapenaeus monoceros (Fabricius, 1798), Along the Saudi Arabian Red Sea Coast
by Sheeja Gireesh, Eyüp Mümtaz Tıraşın, Goutham Bharathi Muthu Palani, Santhosh Kumar Charles, Sirajudheen Thayyil Kadengal, Ronald Grech Santucci, Ricardo Clapis Garla, Zahra Okba, Adel M. S. Adam and Mark Dimech
Biology 2025, 14(4), 406; https://doi.org/10.3390/biology14040406 - 11 Apr 2025
Cited by 1 | Viewed by 1707
Abstract
Metapenaeus monoceros is the second most abundant commercially important shrimp species caught along the Saudi Arabian Red Sea coast. However, knowledge of its life history and population dynamics in the region remains limited, posing challenges for sustainable management. This study assessed the growth, [...] Read more.
Metapenaeus monoceros is the second most abundant commercially important shrimp species caught along the Saudi Arabian Red Sea coast. However, knowledge of its life history and population dynamics in the region remains limited, posing challenges for sustainable management. This study assessed the growth, maturity, and mortality of M. monoceros based on fishery-independent samples collected from shrimp trawling grounds off Al Qunfudhah and Jizan (October 2022–September 2023). Altogether, 10,859 specimens were examined, with a carapace length (CL) ranging from 7.98 to 49.10 mm and a total weight (W) in the range of 0.41 to 41.28 g. The observed sex ratio was 1.56:1 in favor of females. The CLW relationship was W = 0.0024∙CL2.58. The seasonalized von Bertalanffy growth parameters were CL = 50.66 mm, K = 0.35 year−1, tanchor = 0.43 years, C = 0.64, and ts = 0.61 years for females, and CL = 38.97 mm, K = 0.55 year−1, tanchor = 0.51 years, C = 0.84, and ts = 0.39 years for males. Females reached their first sexual maturity at 21.12 mm CL. The exploitation rates (0.60 for both sexes) indicated overfishing. Spawning potential ratio analysis showed that the current fishing pressure reduces the spawning stock biomass to 23% of unexploited levels. A 50% reduction in fishing effort, extended seasonal closures, and selective gear modifications are recommended to rebuild the stock and ensure sustainability. Full article
(This article belongs to the Special Issue Advances in Biological Research into Shrimps, Crabs and Lobsters)
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23 pages, 69587 KiB  
Article
Investigating Steady-State Interpolation and Transient Hydraulic Modelling to Evaluate European Grayling Habitat in a Hydropeaking River
by Frida M. Niemi, Anders G. Andersson, J. Gunnar I. Hellström, Mahboobeh Hajiesmaeili and David Aldvén
Water 2025, 17(7), 1083; https://doi.org/10.3390/w17071083 - 4 Apr 2025
Cited by 1 | Viewed by 571
Abstract
Renewable energy sources such as hydropower are important to reduce the global emissions. Hydropower, however, comes with other environmental challenges by altering the ecological conditions in the rivers. Hydraulic models connected with fish habitat models could be one tool to assess the environmental [...] Read more.
Renewable energy sources such as hydropower are important to reduce the global emissions. Hydropower, however, comes with other environmental challenges by altering the ecological conditions in the rivers. Hydraulic models connected with fish habitat models could be one tool to assess the environmental impacts and evaluate mitigation measures for fish habitats. This study examines the limitations of steady-state hydraulic simulations in a low-sloping river located between two hydropower plants, where downstream regulations significantly influence the river flow dynamics. A 2D hydrodynamic model in Delft3D FM was applied to compare steady-state and transient simulations, focusing on how hydraulic variables affect the spawning habitat. The results show that steady-state models fail to capture time-dependent damping and delayed water level responses, leading to systematic underestimation of hydraulic variability. Peak bed shear stress values were under-predicted by the steady-state interpolation, which may under-predict spawning ground stability. Additionally, the steady-state approach failed to capture daily habitat fluctuations, resulting in a mean absolute error of 2910 m2 in spawning habitat area per hour. This study demonstrates how errors in hydraulic calculations propagate into habitat assessments, potentially leading to misleading long-term evaluations of fish populations. This study highlights the importance of selecting appropriate hydraulic modelling approaches based on river-specific flow dynamics. Future studies should investigate the sensitivity of fish habitat models to hydraulic inputs from steady-state and transient simulations by integrating these approaches into advanced fish modelling tools, such as individual-based models. This will help determine the optimal balance between computational efficiency and accuracy in long-term habitat assessments. Full article
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12 pages, 1513 KiB  
Article
Identification of Different Ecomorphotypes of Coilia nasus in the Dawanzhou Section of the Yangtze River
by Jiahao Liu, Tao Jiang, Junren Xue, Xiubao Chen, Hongbo Liu and Jian Yang
Fishes 2025, 10(3), 113; https://doi.org/10.3390/fishes10030113 - 5 Mar 2025
Viewed by 543
Abstract
X-ray electron probe microanalyzer technology was used to study the microchemistry and habitat history of Coilia nasus collected from the Dawanzhou section of the Yangtze River between May and June 2023. The Sr/Ca ratio from the otolith core to the otolith diameter was [...] Read more.
X-ray electron probe microanalyzer technology was used to study the microchemistry and habitat history of Coilia nasus collected from the Dawanzhou section of the Yangtze River between May and June 2023. The Sr/Ca ratio from the otolith core to the otolith diameter was low (640–1100 µm), representing the first stage of development. In the second stage, C. nasus exhibited two distinct types. The first type, which included individuals 5HK05 and 6HK03, exclusively inhabited brackish estuarine waters. The second type, comprising 13 individuals, resided in higher-salinity seawater environments (Sr/Ca > 7). Furthermore, individuals 5HK01, 5HK03, 5HK07, and 6HK05 displayed a phase with a high Sr/Ca ratio compared to other fish. Freshwater coefficient analysis indicated that C. nasus in the Dawanzhou water area was unlikely to continue upstream to Dongting Lake in the middle reaches of the Yangtze River but may have entered Poyang Lake through its mouth or reproduced in its upper reaches. Analysis of sexual maturity and migration history suggested that the Dawanzhou section primarily serves as a migration channel for C. nasus, with a potential spawning ground for this high-value fish located nearby. Full article
(This article belongs to the Section Biology and Ecology)
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15 pages, 1776 KiB  
Article
Characterization and Modelling of Potential Seaborne Disasters, in the ANA Region
by Ashraf Labib, Dylan Jones, Natalia Andreassen, Rune Elvegård and Mikel Dominguez Cainzos
Appl. Sci. 2025, 15(2), 782; https://doi.org/10.3390/app15020782 - 14 Jan 2025
Cited by 1 | Viewed by 823
Abstract
Shipping activities continue to experience growth across a multitude of industrial sectors within the Arctic, hence there are risks in terms of severity and likelihood of accidents. The Arctic region is inherently dangerous to transportation and human existence due to its extreme climate [...] Read more.
Shipping activities continue to experience growth across a multitude of industrial sectors within the Arctic, hence there are risks in terms of severity and likelihood of accidents. The Arctic region is inherently dangerous to transportation and human existence due to its extreme climate and environmental conditions, and hence the complexities associated with emergency situations within the maritime domain are amplified when operating within the Arctic and North-Atlantic (ANA). The definition and characterisation of potential seaborne disasters and catastrophic incidents in the ANA region are significant enablers in providing a set of critical and sustainable tools for Search and Rescue (SAR), Oil Spill Response (OSR), and emergency management practitioners. Therefore, in this paper we aim to identify and characterise high-priority potential seaborne disasters and catastrophic incidents in the ANA region such as cruise ship accidents, oil leaks, radiological leaks, and fishing boat groundings. These were compiled as an outcome of a set of workshops carried out as part of the ARCSAR, EU Horizon 2020 funded project, and from analysis of the literature. We also provide root cause analysis techniques, tools for strategic decision-making, and means of mitigation. We demonstrate how such tools can be used by applying some of them to a selective case study and drawing lessons learned from the application of root cause analysis, which can help emergency response organisations with preparedness work and hence more efficient response. In doing so, we provide a set of tools that can be used for strategic and operational learning. Such approaches can help standardise the definition and characterisation of potential seaborne disasters and catastrophic incidents in the ANA region in both prospective and retrospective analysis. Full article
(This article belongs to the Special Issue Risk and Safety of Maritime Transportation)
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23 pages, 6859 KiB  
Article
Comparative Analysis of Prediction Models for Trawling Grounds of the Argentine Shortfin Squid Illex argentinus in the Southwest Atlantic High Seas Based on Vessel Position and Fishing Log Data
by Delong Xiang, Yuyan Sun, Hanji Zhu, Jianhua Wang, Sisi Huang, Shengmao Zhang, Famou Zhang and Heng Zhang
Biology 2025, 14(1), 35; https://doi.org/10.3390/biology14010035 - 4 Jan 2025
Viewed by 971
Abstract
To evaluate and compare the effectiveness of prediction models for Argentine squid Illex argentinus trawling grounds in the Southwest Atlantic high seas based on vessel position and fishing log data, this study used AIS datasets and fishing log datasets from fishing seasons spanning [...] Read more.
To evaluate and compare the effectiveness of prediction models for Argentine squid Illex argentinus trawling grounds in the Southwest Atlantic high seas based on vessel position and fishing log data, this study used AIS datasets and fishing log datasets from fishing seasons spanning 2019–2024 (December to June each year). Using a spatial resolution of 0.1° × 0.1° and a monthly temporal resolution, we constructed two datasets—one based on vessel positions and the other on fishing logs. Fishing ground levels were defined according to the density of fishing locations, and combined with oceanographic data (sea surface temperature, 50 m water temperature, sea surface salinity, sea surface height, and mixed layer depth). A CNN-Attention deep learning model was applied to each dataset to develop Illex argentinus trawling ground prediction models. Model accuracy was then compared and potential causes for differences were analyzed. Results showed that the vessel position-based model had a higher accuracy (Accuracy = 0.813) and lower loss rate (Loss = 0.407) than the fishing log-based model (Accuracy = 0.727, Loss = 0.513). The vessel-based model achieved a prediction accuracy of 0.763 on the 2024 test set, while the fishing log-based model reached an accuracy of 0.712, slightly lower than the former, indicating the high accuracy and unique advantages of the vessel position-based model in predicting fishing grounds. Using CPUE from fishing logs as a reference, we found that the vessel position-based model performed well from January to April, whereas the CPUE-based model consistently maintained good accuracy across all months. The 2024 fishing season predictions indicated the formation of primary fishing grounds as early as January 2023, initially near the 46° S line of the Argentine Exclusive Economic Zone, with grounds shifting southeastward from March onward and reaching around 42° S by May and June. This study confirms the reliability of vessel position data in identifying fishing ground information and levels, with higher accuracy in some months compared to the fishing log-based model, thereby reducing the data lag associated with fishing logs, which are typically available a year later. Additionally, national-level fishing log data are often confidential, limiting the ability to fully consider fishing activities across the entire fishing ground region, a limitation effectively addressed by AIS vessel position data. While vessel data reflects daily catch volumes across vessels without distinguishing CPUE by species, log data provide a detailed daily CPUE breakdown by species (e.g., Illex argentinus). This distinction resulted in lower accuracy for vessel-based predictions in December 2023 and May–June 2024, suggesting the need to incorporate fishing log data for more precise assessments of fishing ground levels or resource abundance during those months. Given the near-real-time nature of vessel position data, fishing ground dynamics can be monitored in near real time. The successful development of vessel position-based prediction models aids enterprises in reducing fuel and time costs associated with indiscriminate squid searches, enhancing trawling efficiency. Additionally, such models support quota management in global fisheries by optimizing resource use, reducing fishing time, and consequently lowering carbon emissions and environmental impact, while promoting marine environmental protection in the Southwest Atlantic high seas. Full article
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16 pages, 2639 KiB  
Article
Assessment of Fish Species Biodiversity in the Yong River Basin Based on Environmental DNA Metabarcoding
by Shengming Deng, Bai-an Lin, Yan Luo, Xiaolong Dang, Chengdan Ma, Yongcan Zhou, Xiang Zhang, Yang Zhang, Ning Xu, Shousong Jiang, Jiana Li and Jianlong Li
Diversity 2025, 17(1), 35; https://doi.org/10.3390/d17010035 - 2 Jan 2025
Cited by 2 | Viewed by 1715
Abstract
Fish in the Yong River basin have been significantly impacted by pollution, habitat modification and overfishing. In order to facilitate the recovery of freshwater biodiversity, a fishing ban has been implemented in the Yong River basin since 2022. However, the high level of [...] Read more.
Fish in the Yong River basin have been significantly impacted by pollution, habitat modification and overfishing. In order to facilitate the recovery of freshwater biodiversity, a fishing ban has been implemented in the Yong River basin since 2022. However, the high level of human activity along the waterways of the Yong River basin poses a significant challenge to the monitoring of fish biodiversity using established methods. It is essential, therefore, to have effective monitoring tools to assess the effectiveness of the fishing ban policy. In this study, environmental DNA (eDNA) metabarcoding was employed to assess fish species biodiversity across five river sections of the Yong River basin in October 2022. Additionally, we checked the results against fishing gear (drift gillnets and ground cages) surveys and historical records. A total of twenty-two fish species were found from eDNA metabarcoding, fourteen species were found via fishing, and only two species were found from both methods. The most dominant fish species identified by eDNA was Alburnus mossulensis, present in all river sections. However, a decline in species biodiversity was observed in the whole Yong River basin, with a significant difference in community composition across the Upper Yao River (UYAR) and Yong River (YOR). Moreover, eDNA detected fish and potentially invasive species consistent with their geographic distribution. Overall, the results of this study provide a snapshot of the current fish biodiversity in the Yong River basin, offering baseline data for future evaluations of fishing ban policies in this ecosystem. Full article
(This article belongs to the Special Issue Applications on Environmental DNA in Aquatic Ecology and Biodiversity)
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15 pages, 284 KiB  
Brief Report
When Mediterranean Artisanal Fishers Protect Coastal Ecosystems
by Cornelia E. Nauen
Fishes 2024, 9(12), 472; https://doi.org/10.3390/fishes9120472 - 22 Nov 2024
Viewed by 1284
Abstract
According to EuroStat data, the recorded landings of fisheries products from European waters were estimated at about 6 million tons in 2001, down to 3.2 million tons in 2022. This gradual decline slowed after the entering into force of the reform of the [...] Read more.
According to EuroStat data, the recorded landings of fisheries products from European waters were estimated at about 6 million tons in 2001, down to 3.2 million tons in 2022. This gradual decline slowed after the entering into force of the reform of the European Common Fisheries Policy (CFP) at the end of 2013, but was followed by a steeper decline after 2018. This is reflected in the last assessment of the Scientific Technical and Economic Committee for Fisheries (STEPF), noting that despite progress in the NE Atlantic management, 41% of the assessed stocks in 2022 were outside safe biological limits, down from 80% in 2003. Improvements in the Mediterranean are significantly slower. A warming ocean provokes the measurable poleward migration of species and adds stress to predator–prey relations in all European seas. Within this general picture, the broad-brush landscape is influenced by policy applications more in favour of industrial exploitation and regulatory and market environments, making it very hard for many small-scale fishers (SSFs) to remain in business, let alone attract younger successors for generational transition. In crowded marine spaces, it is a challenge to allocate access rights fairly between fisheries, exclusion zones for resource and habitat protection and much-needed ecosystem recovery, platforms for fossil exploitation, wind farms, underwater cables and recreational uses. Two examples of local initiatives with faunal recovery potential in the Mediterranean are briefly presented as a bottom-up complement to more top-down management approaches. They are spearheaded by artisanal fishers, who seek to restore spawning grounds and other coastal habitats as a way to procure enough fish and other complementary activities to secure their livelihoods in the future. They are supported by local scientists and nature conservation organisations. While promising, this is still rather the exception. Here, it is argued that trust-building between artisanal fishers, conservationists and scientists, and greater systemic support to SSFs by governments, increase chances for the urgently needed structural shifts that deliver the reversal in the ongoing decline in biodiversity and ocean productivity that all aspire to, to ensure sustained social and economic benefits. Full article
(This article belongs to the Special Issue Fisheries Policies and Management)
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17 pages, 3100 KiB  
Article
Environmental Drivers of the Divergence of Harveyi Clade Pathogens with Distinctive Virulence Gene Profiles
by Andrei L. Barkovskii and Cameron Brown
Microorganisms 2024, 12(11), 2234; https://doi.org/10.3390/microorganisms12112234 - 5 Nov 2024
Cited by 1 | Viewed by 1095
Abstract
Fish and shellfish pathogens of the Harveyi clade of the Vibrio genus cause significant losses to aquaculture yields and profits, with some of them also causing infections in humans. The present study aimed to evaluate the presence of Harveyi clade fish and shellfish [...] Read more.
Fish and shellfish pathogens of the Harveyi clade of the Vibrio genus cause significant losses to aquaculture yields and profits, with some of them also causing infections in humans. The present study aimed to evaluate the presence of Harveyi clade fish and shellfish pathogens and their possible diversification in response to environmental drivers in southeastern USA waters. The presence and abundance of potential pathogens were evaluated via the detection and quantitation of six Harveyi-clade-specific virulence genes (toxR, luxR, srp, vhha, vhh, and vhp; VGs) in environmental DNA with clade-specific primers. The environmental DNA was obtained from water and sediments collected from three Georgia (USA) cultured clam and wild oyster grounds. In sediments, the VG concentrations were, on average, three orders of magnitude higher than those in water. The most and least frequently detected VGs were vhp and toxR, respectively. In water, the VGs split into two groups based on their seasonal trends. The first group, composed of luxR, vhp, vhha, and vhh, peaked in August and remained at lower concentrations throughout the duration of the study. The second group, composed of toxR and srp, peaked in June and disappeared between July and December. The first group revealed a high adaptation of their carriers to an increase in temperature, tolerance to a wide range of pH, and a positive correlation with salinity up to 25 ppt. The second group of VGs demonstrated a lower adaptation of their carriers to temperature and negative correlations with pH, salinity, potential water density, conductivity, and dissolved solids but a positive correlation with turbidity. No such trends were observed in sediments. These data reveal the role of VGs in the adaptability of the Harveyi clade pathogens to environmental parameters, causing their diversification and possibly their stratification into different ecological niches due to changes in water temperature, acidity, salinity, and turbidity. This diversification and stratification may lead to further speciation and the emergence of new pathogens of this clade. Our data urge further monitoring of the presence and diversification of Harveyi clade pathogens in a global warming scenario. Full article
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15 pages, 1880 KiB  
Article
Elasmobranch Mark–Recapture Experiment off the Balearic Islands: Insight into Scyliorhinus canicula Growth, Mobility, and Population Size
by Francesca Ferragut-Perello, Paula Sánchez-Zulueta, Sergio Ramírez-Amaro, Maria Teresa Farriols, Noemi Pasini, Beatriz Guijarro, Cristina Rodríguez-Cabello and Francesc Ordines
Fishes 2024, 9(8), 315; https://doi.org/10.3390/fishes9080315 - 9 Aug 2024
Cited by 3 | Viewed by 2408
Abstract
Despite the high diversity of elasmobranch fishes in the Balearic Islands, knowledge of their biology and population dynamics is still scarce. A recent mark-and-recapture experiment off the Balearic Islands tagged 3738 individuals of 23 shark and batoid species during MEDITS and CANAL bottom [...] Read more.
Despite the high diversity of elasmobranch fishes in the Balearic Islands, knowledge of their biology and population dynamics is still scarce. A recent mark-and-recapture experiment off the Balearic Islands tagged 3738 individuals of 23 shark and batoid species during MEDITS and CANAL bottom trawl scientific surveys from June 2021 to August 2023. Retrieval was reported for the sharks Scyliorhinus canicula and Mustelus mustelus, revealing relatively small home ranges for these species (0.2–38.5 km and 7.8–15.3 km for S. canicula and M. mustelus, respectively). Recapture efficiency was higher from scientific surveys than from commercial catches, highlighting potential challenges in collaboration with fishermen and recapture reports. Density estimates obtained from the MEDITS bottom trawl survey suggest a much larger population for S. canicula than estimates from the mark–recapture data, indicating MEDITS density estimates for this species may be overestimated due to its scavenger behavior perhaps favoring individuals searching for discards aggregated in the fishing grounds. This study emphasizes the importance of monitoring, collaborative efforts, and improved reporting mechanisms to enhance our understanding of elasmobranch populations and provide support for sustainable management of these vulnerable marine species. Full article
(This article belongs to the Section Biology and Ecology)
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32 pages, 2199 KiB  
Review
Antimicrobial Resistance in Aquaculture: Risk Mitigation within the One Health Context
by Milan Milijasevic, Slavica Veskovic-Moracanin, Jelena Babic Milijasevic, Jelena Petrovic and Ivan Nastasijevic
Foods 2024, 13(15), 2448; https://doi.org/10.3390/foods13152448 - 2 Aug 2024
Cited by 35 | Viewed by 6886
Abstract
The application of antimicrobials in aquaculture primarily aims to prevent and treat bacterial infections in fish, but their inappropriate use may result in the emergence of zoonotic antibiotic-resistant bacteria and the subsequent transmission of resistant strains to humans via food consumption. The aquatic [...] Read more.
The application of antimicrobials in aquaculture primarily aims to prevent and treat bacterial infections in fish, but their inappropriate use may result in the emergence of zoonotic antibiotic-resistant bacteria and the subsequent transmission of resistant strains to humans via food consumption. The aquatic environment serves as a potential reservoir for resistant bacteria, providing an ideal breeding ground for development of antimicrobial resistance (AMR). The mutual inter-connection of intensive fish-farming systems with terrestrial environments, the food processing industry and human population creates pathways for the transmission of resistant bacteria, exacerbating the problem further. The aim of this study was to provide an overview of the most effective and available risk mitigation strategies to tackle AMR in aquaculture, based on the One Health (OH) concept. The stringent antimicrobial use guidelines, promoting disease control methods like enhanced farm biosecurity measures and vaccinations, alternatives to antibiotics (ABs) (prebiotics, probiotics, immunostimulants, essential oils (EOs), peptides and phage therapy), feeding practices, genetics, monitoring water quality, and improving wastewater treatment, rather than applying excessive use of antimicrobials, can effectively prevent the development of AMR and release of resistant bacteria into the environment and food. The contribution of the environment to AMR development traditionally receives less attention, and, therefore, environmental aspects should be included more prominently in OH efforts to predict, detect and prevent the risks to health. This is of particular importance for low and middle-income countries with a lack of integration of the national AMR action plans (NAPs) with the aquaculture-producing environment. Integrated control of AMR in fisheries based on the OH approach can contribute to substantial decrease in resistance, and such is the case in Asia, where in aquaculture, the percentage of antimicrobial compounds with resistance exceeding 50% (P50) decreased from 52% to 22% within the period of the previous two decades. Full article
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12 pages, 962 KiB  
Article
Assessing the Conservation Value of Artificial and Natural Reefs via Ichthyoplankton Spatio-Temporal Dynamics
by Carlos Adrián Sánchez-Caballero, José Manuel Borges-Souza, Ricardo Javier Saldierna-Martínez and Avigdor Abelson
Fishes 2024, 9(5), 166; https://doi.org/10.3390/fishes9050166 - 4 May 2024
Cited by 2 | Viewed by 2343
Abstract
The distribution of fish eggs and larvae (ichthyoplankton) reflects spawning and nursery areas as well as dispersal routes. This study’s goal is to demonstrate how the identification of ichthyoplankton species and stages and their spatial distribution among natural reefs (NRs) and artificial reefs [...] Read more.
The distribution of fish eggs and larvae (ichthyoplankton) reflects spawning and nursery areas as well as dispersal routes. This study’s goal is to demonstrate how the identification of ichthyoplankton species and stages and their spatial distribution among natural reefs (NRs) and artificial reefs (ARs) may serve as decision-making tools in conservation and fishery management. Natural reefs exhibited an eight-times higher abundance of eggs, as well as the highest abundance of larvae in the yolk-sac and preflexion phases. In contrast, ARs had the highest abundance of larvae in the flexion and postflexion phases. Natural reefs may serve as breeding grounds for Scaridae, Labridae, and Mugilidae; whereas, ARs may serve as breeding sites for Lutjanidae, Synodontidae, Carangidae, Fistularidae, and Haemulidae. Our study revealed differences between ARs and NRs, which demonstrate the potential of artificial reefs to expand the supply and settlement options of reef fishes and consequently can lead to increased fish production with potential benefits to adjacent fishing areas through connectivity. Thus, ARs as no-take sites can be effective tools for both fishery management and biodiversity conservation. The findings highlight the potential use of ichthyoplankton tools and the importance of considering both types of reefs in marine conservation and management efforts. Full article
(This article belongs to the Special Issue Biology and Ecology of Coral Reef Fishes)
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