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Keywords = pectin remodeling enzymes

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16 pages, 14480 KB  
Article
Pectin Peek-a-Boo: Homogalacturonan Turnover During Flooding-Induced Legume Root Aerenchyma Formation
by Timothy J. Pegg, Daniel K. Gladish and Robert L. Baker
Plants 2025, 14(17), 2620; https://doi.org/10.3390/plants14172620 - 23 Aug 2025
Viewed by 1174
Abstract
Flooding can cause root hypoxia and can lead to significant agricultural losses. Therefore, understanding plant adaptations to flooding, including root aerenchyma development, is one important avenue for insuring future global food security. We investigated cell wall modifications during root aerenchyma formation in response [...] Read more.
Flooding can cause root hypoxia and can lead to significant agricultural losses. Therefore, understanding plant adaptations to flooding, including root aerenchyma development, is one important avenue for insuring future global food security. We investigated cell wall modifications during root aerenchyma formation in response to the prolonged 0–48 h flooding of Phaseolus coccineus, Pisum sativum, and Cicer arietinum seedlings. Using transmission electron microscopy, toluidine blue O (TBO) staining, and immunolabeling with antibodies targeting de-methyl-esterified homogalacturonan (DMEH), partially DMEH, and methyl-esterified homogalacturonan (MEH), we examined changes in cell wall composition. Transmission electron microscopy and TBO staining revealed degradation of cell walls and middle lamella, with accumulation of DMEH near flooding-induced aerenchyma cavities. Immunolabeling indicated increased DMEH epitope availability in flooded roots, suggesting a role in cell wall remodeling. Enzyme pretreatments, used to “unmask” homogalacturonan by removing cellulose and hemicellulose, revealed that specific forms of homogalacturonan, particularly DMEH complexed with calcium and MEH, are masked by these cell wall components. The study highlights the complex interplay of pectin, cellulose, and hemicellulose in cell wall degradation during aerenchyma development, providing insights into legume flooding stress responses. Full article
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22 pages, 9229 KB  
Article
Brassinosteroid Coordinates with ROS, Auxin and Gibberellin to Promote Mesocotyl Elongation and Deep-Sowing Tolerance in Maize
by Yahui Wang, Ying Li, Yuze Ma, Xiaolin Wu, Wei Wang, Hui Liu and Xiaoming Li
Curr. Issues Mol. Biol. 2025, 47(8), 668; https://doi.org/10.3390/cimb47080668 - 18 Aug 2025
Cited by 1 | Viewed by 971
Abstract
Mesocotyl elongation is the key determinant of deep-sowing tolerance in maize. Sowing at an appropriate depth allows the seedling to exploit water and nutrients stored in deeper soil layers, thereby enhancing its ability to withstand drought and other abiotic stresses. Mesocotyl elongation is [...] Read more.
Mesocotyl elongation is the key determinant of deep-sowing tolerance in maize. Sowing at an appropriate depth allows the seedling to exploit water and nutrients stored in deeper soil layers, thereby enhancing its ability to withstand drought and other abiotic stresses. Mesocotyl elongation is regulated by the phytohormones brassinosteroid (BR), auxin (IAA), gibberellin (GA), and reactive oxygen species (ROS). However, whether and how BR coordinates IAA, GA, and ROS to control mesocotyl elongation in maize remains unclear. Here, we demonstrated that BRs orchestrate ROS, IAA, and GA signaling to remodel cell-wall metabolism in mesocotyl cells, promote cell elongation, and, consequently, strengthen deep-sowing tolerance. BR promoted mesocotyl elongation through multiple routes: (1) decreasing the contents of cell-wall components (hemicellulose, cellulose, and pectin); (2) activating cell-wall-loosening enzymes (cellulase, pectinase, and acidic xylanase); and (3) disturbing ROS homeostasis by elevating superoxide dismutase (SOD) activity. Combined treatments of BR with either IAA or GA further enhanced mesocotyl elongation in a concentration-dependent manner. In deep-sowing trials (15 cm), application of BR alone or in combination with IAA or GA markedly increased mesocotyl length and emergence rate, thereby improving deep-sowing tolerance. Our work indicated that BR integrated ROS, IAA, and GA signals to restructure the cell wall and derived mesocotyl cell elongation, providing both theoretical insights and practical strategies for breeding maize varieties with enhanced deep-sowing tolerance. Full article
(This article belongs to the Special Issue Plant Hormones, Development, and Stress Tolerance)
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21 pages, 6476 KB  
Article
Elucidating the Molecular Mechanisms of Physiological Fruit Abscission in Actinidia arguta Through Comparative Transcriptomics and Transient Genetic Transformation
by Pengqiang Yuan, Yanli Wang, Yining Sun, Guoliang Liu, Hongyan Qin, Shutian Fan, Yiping Yan, Bowei Sun and Wenpeng Lu
Plants 2025, 14(11), 1645; https://doi.org/10.3390/plants14111645 - 28 May 2025
Cited by 3 | Viewed by 1081
Abstract
Actinidia arguta (A. arguta) is valued for its nutritional richness, but physiological fruit abscission severely limits production efficiency in elite cultivars. To unravel the molecular basis of this process, we compared two cultivars: abscission-prone ‘KL’ and abscission-resistant ‘JL’. During fruit development, [...] Read more.
Actinidia arguta (A. arguta) is valued for its nutritional richness, but physiological fruit abscission severely limits production efficiency in elite cultivars. To unravel the molecular basis of this process, we compared two cultivars: abscission-prone ‘KL’ and abscission-resistant ‘JL’. During fruit development, ‘KL’ exhibited an earlier decline in auxin (AUX) levels within the fruit abscission zone (FAZ), coupled with persistently higher ethylene (ETH) concentrations and polygalacturonase (PG) activity compared to ‘JL’. Comparative transcriptomics identified abscission-related genes enriched in plant hormone signaling (AUX, ETH, ABA, JA, BR), starch/sucrose metabolism, and photosynthesis pathways. AUX signaling diverged predominantly during early development, while ETH, BR, and JA pathways varied across multiple stages. Exogenous applications of plant growth regulators (ethephon, 2,4-D, methyl jasmonate, and 2,4-epibrassinolide) and transient overexpression of key genes (AaETR1, AaERF035, AaPME68, AaPP2C27, AaMYC1, and AaPMEI10) validated their roles in modulating hormone crosstalk and cell wall remodeling. Overexpression of AaERF035 and AaPME68 likely accelerated abscission by enhancing ETH biosynthesis and pectin degradation, while AaPMEI10 and AaMYC1 potentially delayed abscission via suppression of cell wall-modifying enzymes. This study elucidates the hormonal and transcriptional networks governing fruit abscission in A. arguta, providing insights for targeted breeding and cultivation strategies to mitigate yield loss. Full article
(This article belongs to the Section Plant Development and Morphogenesis)
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15 pages, 3702 KB  
Article
Pectin Remodeling and Involvement of AtPME3 in the Parasitic Plant–Plant Interaction, Phelipanche ramosaArabidospis thaliana
by Cyril Grandjean, Christophe Veronesi, Christine Rusterucci, Charlotte Gautier, Yannis Maillot, Maïté Leschevin, Françoise Fournet, Jan Drouaud, Paulo Marcelo, Luciane Zabijak, Philippe Delavault, Philippe Simier, Sophie Bouton and Karine Pageau
Plants 2024, 13(15), 2168; https://doi.org/10.3390/plants13152168 - 5 Aug 2024
Cited by 1 | Viewed by 1785
Abstract
Phelipanche ramosa is a root parasitic plant fully dependent on host plants for nutrition and development. Upon germination, the parasitic seedling develops inside the infected roots a specific organ, the haustorium, thanks to the cell wall-degrading enzymes of haustorial intrusive cells, and induces [...] Read more.
Phelipanche ramosa is a root parasitic plant fully dependent on host plants for nutrition and development. Upon germination, the parasitic seedling develops inside the infected roots a specific organ, the haustorium, thanks to the cell wall-degrading enzymes of haustorial intrusive cells, and induces modifications in the host’s cell walls. The model plant Arabidopsis thaliana is susceptible to P. ramosa; thus, mutants in cell wall metabolism, particularly those involved in pectin remodeling, like Atpme3-1, are of interest in studying the involvement of cell wall-degrading enzymes in the establishment of plant–plant interactions. Host–parasite co-cultures in mini-rhizotron systems revealed that parasite attachments are twice as numerous and tubercle growth is quicker on Atpme3-1 roots than on WT roots. Compared to WT, the increased susceptibility in AtPME3-1 is associated with reduced PME activity in the roots and a lower degree of pectin methylesterification at the host–parasite interface, as detected immunohistochemically in infected roots. In addition, both WT and Atpme3-1 roots responded to infestation by modulating the expression of PAE- and PME-encoding genes, as well as related global enzyme activities in the roots before and after parasite attachment. However, these modulations differed between WT and Atpme3-1, which may contribute to different pectin remodeling in the roots and contrasting susceptibility to P. ramosa. With this integrative study, we aim to define a model of cell wall response to this specific biotic stress and indicate, for the first time, the role of PME3 in this parasitic plant–plant interaction. Full article
(This article belongs to the Section Plant Protection and Biotic Interactions)
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17 pages, 3288 KB  
Article
Discovery and Transcriptional Profiling of Penicillium digitatum Genes That Could Promote Fungal Virulence during Citrus Fruit Infection
by Paloma Sánchez-Torres, Luis González-Candelas and Ana Rosa Ballester
J. Fungi 2024, 10(4), 235; https://doi.org/10.3390/jof10040235 - 22 Mar 2024
Cited by 3 | Viewed by 2577
Abstract
Green mold caused by Penicillium digitatum (Pers.:Fr.) Sacc is the most prevalent postharvest rot concerning citrus fruits. Using the subtractive suppression hybridization (SSH) technique, different P. digitatum genes have been identified that could be involved in virulence during citrus infection in the early [...] Read more.
Green mold caused by Penicillium digitatum (Pers.:Fr.) Sacc is the most prevalent postharvest rot concerning citrus fruits. Using the subtractive suppression hybridization (SSH) technique, different P. digitatum genes have been identified that could be involved in virulence during citrus infection in the early stages, a crucial moment that determines whether the infection progresses or not. To this end, a comparison of two P. digitatum strains with high and low virulence has been carried out. We conducted a study on the gene expression profile of the most relevant genes. The results indicate the importance of transcription and regulation processes as well as enzymes involved in the degradation of the plant cell wall. The most represented expressed sequence tag (EST) was identified as PDIP_11000, associated with the FluG domain, which is putatively involved in the activation of conidiation. It is also worth noting that PDIP_02280 encodes a pectin methyl esterase, a cell wall remodeling protein with a high expression level in the most virulent fungal strains, which is notably induced during citrus infection. Furthermore, within the group with the greatest representation and showing significant induction in the early stages of infection, regulatory proteins (PDIP_68700, PDIP_76160) and a chaperone (PDIP_38040) stand out. To a lesser extent, but not less relevant, it is worth distinguishing different regulatory proteins and transcription factors, such as PDIP_00580, PDIP_49640 and PDIP_78930. Full article
(This article belongs to the Special Issue New Perspectives on Fungal Molecular Biology Research)
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14 pages, 9029 KB  
Article
A Pectate Lyase Gene Plays a Critical Role in Xylem Vascular Development in Arabidopsis
by Yun Bai, Dongdong Tian, Peng Chen, Dan Wu, Kebing Du, Bo Zheng and Xueping Shi
Int. J. Mol. Sci. 2023, 24(13), 10883; https://doi.org/10.3390/ijms241310883 - 29 Jun 2023
Cited by 11 | Viewed by 3289
Abstract
As a major component of the plant primary cell wall, structure changes in pectin may affect the formation of the secondary cell wall and lead to serious consequences on plant growth and development. Pectin-modifying enzymes including pectate lyase-like proteins (PLLs) participate in the [...] Read more.
As a major component of the plant primary cell wall, structure changes in pectin may affect the formation of the secondary cell wall and lead to serious consequences on plant growth and development. Pectin-modifying enzymes including pectate lyase-like proteins (PLLs) participate in the remodeling of pectin during organogenesis, especially during fruit ripening. In this study, we used Arabidopsis as a model system to identify critical PLL genes that are of particular importance for vascular development. Four PLL genes, named AtPLL15, AtPLL16, AtPLL19, and AtPLL26, were identified for xylem-specific expression. A knock-out T-DNA mutant of AtPLL16 displayed an increased amount of pectin, soluble sugar, and acid-soluble lignin (ASL). Interestingly, the atpll16 mutant exhibited an irregular xylem phenotype, accompanied by disordered xylem ray cells and an absence of interfascicular phloem fibers. The xylem fiber cell walls in the atpll16 mutant were thicker than those of the wild type. On the contrary, AtPLL16 overexpression resulted in expansion of the phloem and a dramatic change in the xylem-to-phloem ratios. Altogether, our data suggest that AtPLL16 as a pectate lyase plays an important role during vascular development in Arabidopsis. Full article
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15 pages, 2208 KB  
Article
Comparative Proteomic Analysis of Potato Roots from Resistant and Susceptible Cultivars to Spongospora subterranea Zoospore Root Attachment In Vitro
by Xian Yu, Richard Wilson, Sadegh Balotf, Robert S. Tegg, Alieta Eyles and Calum R. Wilson
Molecules 2022, 27(18), 6024; https://doi.org/10.3390/molecules27186024 - 15 Sep 2022
Cited by 5 | Viewed by 2467
Abstract
Potato (Solanum tuberosum L.) exhibits broad variations in cultivar resistance to tuber and root infections by the soilborne, obligate biotrophic pathogen Spongospora subterranea. Host resistance has been recognised as an important approach in potato disease management, whereas zoospore root attachment has [...] Read more.
Potato (Solanum tuberosum L.) exhibits broad variations in cultivar resistance to tuber and root infections by the soilborne, obligate biotrophic pathogen Spongospora subterranea. Host resistance has been recognised as an important approach in potato disease management, whereas zoospore root attachment has been identified as an effective indicator for the host resistance to Spongospora root infection. However, the mechanism of host resistance to zoospore root attachment is currently not well understood. To identify the potential basis for host resistance to S. subterranea at the molecular level, twelve potato cultivars differing in host resistance to zoospore root attachment were used for comparative proteomic analysis. In total, 3723 proteins were quantified from root samples across the twelve cultivars using a data-independent acquisition mass spectrometry approach. Statistical analysis identified 454 proteins that were significantly more abundant in the resistant cultivars; 626 proteins were more abundant in the susceptible cultivars. In resistant cultivars, functional annotation of the proteomic data indicated that Gene Ontology terms related to the oxidative stress and metabolic processes were significantly over-represented. KEGG pathway analysis identified that the phenylpropanoid biosynthesis pathway was associated with the resistant cultivars, suggesting the potential role of lignin biosynthesis in the host resistance to S. subterranea. Several enzymes involved in pectin biosynthesis and remodelling, such as pectinesterase and pectin acetylesterase, were more abundant in the resistant cultivars. Further investigation of the potential role of root cell wall pectin revealed that the pectinase treatment of roots resulted in a significant reduction in zoospore root attachment in both resistant and susceptible cultivars. This study provides a comprehensive proteome-level overview of resistance to S. subterranea zoospore root attachment across twelve potato cultivars and has identified a potential role for cell wall pectin in regulating zoospore root attachment. Full article
(This article belongs to the Special Issue Advanced Applications of Mass Spectrometry for Proteomics Analysis)
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28 pages, 4644 KB  
Article
Desiccation Tolerance in Ramonda serbica Panc.: An Integrative Transcriptomic, Proteomic, Metabolite and Photosynthetic Study
by Marija Vidović, Ilaria Battisti, Ana Pantelić, Filis Morina, Giorgio Arrigoni, Antonio Masi and Sonja Veljović Jovanović
Plants 2022, 11(9), 1199; https://doi.org/10.3390/plants11091199 - 28 Apr 2022
Cited by 15 | Viewed by 4008
Abstract
The resurrection plant Ramonda serbica Panc. survives long desiccation periods and fully recovers metabolic functions within one day upon watering. This study aimed to identify key candidates and pathways involved in desiccation tolerance in R. serbica. We combined differential transcriptomics and proteomics, phenolic [...] Read more.
The resurrection plant Ramonda serbica Panc. survives long desiccation periods and fully recovers metabolic functions within one day upon watering. This study aimed to identify key candidates and pathways involved in desiccation tolerance in R. serbica. We combined differential transcriptomics and proteomics, phenolic and sugar analysis, FTIR analysis of the cell wall polymers, and detailed analysis of the photosynthetic electron transport (PET) chain. The proteomic analysis allowed the relative quantification of 1192 different protein groups, of which 408 were differentially abundant between hydrated (HL) and desiccated leaves (DL). Almost all differentially abundant proteins related to photosynthetic processes were less abundant, while chlorophyll fluorescence measurements implied shifting from linear PET to cyclic electron transport (CET). The levels of H2O2 scavenging enzymes, ascorbate-glutathione cycle components, catalases, peroxiredoxins, Fe-, and Mn superoxide dismutase (SOD) were reduced in DL. However, six germin-like proteins (GLPs), four Cu/ZnSOD isoforms, three polyphenol oxidases, and 22 late embryogenesis abundant proteins (LEAPs; mainly LEA4 and dehydrins), were desiccation-inducible. Desiccation provoked cell wall remodeling related to GLP-derived H2O2/HO activity and pectin demethylesterification. This comprehensive study contributes to understanding the role and regulation of the main metabolic pathways during desiccation aiming at crop drought tolerance improvement. Full article
(This article belongs to the Special Issue Desiccation/Salinity Tolerance and the Crosstalk Therein)
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22 pages, 1650 KB  
Review
Recent Advances in Understanding the Roles of Pectin as an Active Participant in Plant Signaling Networks
by Yesol Shin, Andrea Chane, Minjung Jung and Yuree Lee
Plants 2021, 10(8), 1712; https://doi.org/10.3390/plants10081712 - 19 Aug 2021
Cited by 96 | Viewed by 13234
Abstract
Pectin is an abundant cell wall polysaccharide with essential roles in various biological processes. The structural diversity of pectins, along with the numerous combinations of the enzymes responsible for pectin biosynthesis and modification, plays key roles in ensuring the specificity and plasticity of [...] Read more.
Pectin is an abundant cell wall polysaccharide with essential roles in various biological processes. The structural diversity of pectins, along with the numerous combinations of the enzymes responsible for pectin biosynthesis and modification, plays key roles in ensuring the specificity and plasticity of cell wall remodeling in different cell types and under different environmental conditions. This review focuses on recent progress in understanding various aspects of pectin, from its biosynthetic and modification processes to its biological roles in different cell types. In particular, we describe recent findings that cell wall modifications serve not only as final outputs of internally determined pathways, but also as key components of intercellular communication, with pectin as a major contributor to this process. The comprehensive view of the diverse roles of pectin presented here provides an important basis for understanding how cell wall-enclosed plant cells develop, differentiate, and interact. Full article
(This article belongs to the Special Issue Biotechnological Advances in Biomass and Bioenergy Production)
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16 pages, 1609 KB  
Review
Building a Flower: The Influence of Cell Wall Composition on Flower Development and Reproduction
by José Erik Cruz-Valderrama, Judith Jazmin Bernal-Gallardo, Humberto Herrera-Ubaldo and Stefan de Folter
Genes 2021, 12(7), 978; https://doi.org/10.3390/genes12070978 - 26 Jun 2021
Cited by 12 | Viewed by 7151
Abstract
Floral patterning is a complex task. Various organs and tissues must be formed to fulfill reproductive functions. Flower development has been studied, mainly looking for master regulators. However, downstream changes such as the cell wall composition are relevant since they allow cells to [...] Read more.
Floral patterning is a complex task. Various organs and tissues must be formed to fulfill reproductive functions. Flower development has been studied, mainly looking for master regulators. However, downstream changes such as the cell wall composition are relevant since they allow cells to divide, differentiate, and grow. In this review, we focus on the main components of the primary cell wall—cellulose, hemicellulose, and pectins—to describe how enzymes involved in the biosynthesis, modifications, and degradation of cell wall components are related to the formation of the floral organs. Additionally, internal and external stimuli participate in the genetic regulation that modulates the activity of cell wall remodeling proteins. Full article
(This article belongs to the Special Issue New Insights into Plant Development and Signal Transduction)
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14 pages, 3798 KB  
Article
Drought Disrupts Auxin Localization in Abscission Zone and Modifies Cell Wall Structure Leading to Flower Separation in Yellow Lupine
by Aleksandra Bogumiła Florkiewicz, Agata Kućko, Małgorzata Kapusta, Sebastian Burchardt, Tomasz Przywieczerski, Grażyna Czeszewska-Rosiak and Emilia Wilmowicz
Int. J. Mol. Sci. 2020, 21(18), 6848; https://doi.org/10.3390/ijms21186848 - 18 Sep 2020
Cited by 21 | Viewed by 4533
Abstract
Drought causes the excessive abscission of flowers in yellow lupine, leading to yield loss and serious economic consequences in agriculture. The structure that determines the time of flower shedding is the abscission zone (AZ). Its functioning depends on the undisturbed auxin movement from [...] Read more.
Drought causes the excessive abscission of flowers in yellow lupine, leading to yield loss and serious economic consequences in agriculture. The structure that determines the time of flower shedding is the abscission zone (AZ). Its functioning depends on the undisturbed auxin movement from the flower to the stem. However, little is known about the mechanism guiding cell–cell adhesion directly in an AZ under water deficit. Therefore, here, we seek a fuller understanding of drought-dependent reactions and check the hypothesis that water limitation in soil disturbs the natural auxin balance within the AZ and, in this way, modifies the cell wall structure, leading to flower separation. Our strategy combined microscopic, biochemical, and chromatography approaches. We show that drought affects indole-3-acetic acid (IAA) distribution and evokes cellular changes, indicating AZ activation and flower abortion. Drought action was manifested by the accumulation of proline in the AZ. Moreover, cell wall-related modifications in response to drought are associated with reorganization of methylated homogalacturonans (HG) in the AZ, and upregulation of pectin methylesterase (PME) and polygalacturonase (PG)—enzymes responsible for pectin remodeling. Another symptom of stress action is the accumulation of hemicelluloses. Our data provide new insights into cell wall remodeling events during drought-induced flower abscission, which is relevant to control plant production. Full article
(This article belongs to the Special Issue Environmental Stress and Plants)
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41 pages, 1483 KB  
Review
Cell Wall Composition, Biosynthesis and Remodeling during Pollen Tube Growth
by Jean-Claude Mollet, Christelle Leroux, Flavien Dardelle and Arnaud Lehner
Plants 2013, 2(1), 107-147; https://doi.org/10.3390/plants2010107 - 7 Mar 2013
Cited by 121 | Viewed by 21719
Abstract
The pollen tube is a fast tip-growing cell carrying the two sperm cells to the ovule allowing the double fertilization process and seed setting. To succeed in this process, the spatial and temporal controls of pollen tube growth within the female organ are [...] Read more.
The pollen tube is a fast tip-growing cell carrying the two sperm cells to the ovule allowing the double fertilization process and seed setting. To succeed in this process, the spatial and temporal controls of pollen tube growth within the female organ are critical. It requires a massive cell wall deposition to promote fast pollen tube elongation and a tight control of the cell wall remodeling to modify the mechanical properties. In addition, during its journey, the pollen tube interacts with the pistil, which plays key roles in pollen tube nutrition, guidance and in the rejection of the self-incompatible pollen. This review focuses on our current knowledge in the biochemistry and localization of the main cell wall polymers including pectin, hemicellulose, cellulose and callose from several pollen tube species. Moreover, based on transcriptomic data and functional genomic studies, the possible enzymes involved in the cell wall remodeling during pollen tube growth and their impact on the cell wall mechanics are also described. Finally, mutant analyses have permitted to gain insight in the function of several genes involved in the pollen tube cell wall biosynthesis and their roles in pollen tube growth are further discussed. Full article
(This article belongs to the Special Issue Pollen Tube Growth)
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