Search Results (59)

The large pelagic species play an important role in transferring energy in vast distant marine ecoregions. Results obtained report on extraordinary findings of important commercial species in southeast–south Brazilian waters, including the Southern bluefin tuna Thunnus maccoyii and the Pacific bluefin tuna Thunnus orientalis, an endemic species from the Pacific Ocean. These specimens were identified within the genomic description of 10 individuals randomly selected from the catch to evaluate the catch composition of pelagic longline fisheries off Brazilian waters. Most of the records were from T. maccoyii (6), followed by the Bigeye tuna T. obesus (2), Yellowfin tuna T. albacares (1), and T. orientalis (1). Yellowfin and Bigeye tuna are expected to be captured in the vicinity of the longline fishing areas. However, the unlikely presence of the cold-water T. maccoyii and the warm-water T. orientalis suggests a long migration from common species ranges that could be influenced by climate change. These results imply a readjustment of spatial management structures for these species. Full article

The evolutionary history of emperors, particularly in the Atlantic and Indo-West Pacific Oceans, remains largely unmapped. This study explores the maternal lineage evolution of Lethrinids by examining the complete mitogenome of Lethrinus atlanticus, which is endemic to the Eastern Atlantic Ocean. Utilizing advanced next-generation sequencing, we found that the mitogenome spans 16,789 base pairs and encompasses 37 genes, including 13 protein-coding genes (PCGs), two ribosomal RNAs, 22 transfer RNAs, and an AT-rich control region (CR). Our analysis indicates a preference for AT base pairs in the L. atlanticus mitogenome (53.10%). Most PCGs begin with the ATG codon, except for COI, which starts with GTG. Relative synonymous codon usage reveals high frequencies for alanine, leucine, proline, serine, and threonine. The ratio of nonsynonymous to synonymous substitutions suggests strong negative selection across all PCGs in Lethrinus species. Most transfer RNAs exhibit typical cloverleaf structures, with the exception of tRNA-serine (GCT), which lacks a dihydrouracil stem. Comparative analysis of conserved sequence blocks across the CRs of three Lethrinus species shows notable differences in length and nucleotide composition. Phylogenetic analysis using concatenated PCGs clearly distinguishes all Lethrinus species, including L. atlanticus, and sheds light on the evolutionary relationships among Spariformes species. The estimated divergence time of approximately 20.67 million years between L. atlanticus and its Indo-West Pacific relatives provides insights into their historical separation and colonization during the late Oligocene. The distribution of Lethrinids may be influenced by ocean currents and ecological factors, potentially leading to their speciation across the Eastern Atlantic and Indo-West Pacific. This study enhances our understanding of the genetic diversity and phylogenetic relationships within Lethrinus species. Further exploration of other emperor fish mitogenomes and comprehensive genomic data could provide vital insights into their genetic makeup, evolutionary history, and environmental adaptability in marine ecosystems globally. Full article

The franciscana dolphin (Pontoporia blainvillei) is a small cetacean endemic to the coastal waters of the southwestern Atlantic Ocean. Due to its restricted distribution, it is subject to high bycatch mortality in the gillnets used for commercial and artisanal fishing. The rehabilitation of the franciscana is still a major challenge, as most attempts to rehabilitate stranded animals have failed. This study aims to present the case of the rehabilitation of a franciscana dolphin calf, stranded in San Clemente del Tuyú, Argentina, at the beginning of the predation period. The feeding strategy and nutritional profile at different stages during the 88 days of rehabilitation are meticulously detailed. Its diet was prepared by hand based on studies of milk composition, the feeding ecology of franciscana in Argentinean waters, and previous records of the Fundación Mundo Marino Rehabilitation Center. The diets were designed to meet the nutritional needs of franciscana dolphins. In addition, the hematological, cytological, and fecal analyses recorded during the rehabilitation are presented. Although the animal could not be released, due to its death, this report provides baseline information that can improve the ability of veterinarians to care for debilitated, live-stranded dolphins. This information may also be useful in the implementation and development of healthcare protocols for this species. Full article

We sequenced and analyzed the complete mitogenome of a Norwegian isolate of the octocoral Alcyonium digitatum using the Ion Torrent sequencing technology. The 18,790 bp circular mitochondrial genome was found to harbor the same set of 17 genes, which encode 14 protein subunits, two structural ribosomal RNAs and one tRNA, as reported in other octocorals. In addition, we detected a new tRNA^Pro-like gene sequence nested within the MutS protein coding region. This putative tRNA gene feature appears to be conserved among the octocorals but has not been reported previously. The A. digitatum mitogenome was also shown to harbor an optional gene (ORFA) that encodes a putative protein of 191 amino acids with unknown function. A mitogenome-based phylogenetic analysis, presented as a maximum likelihood tree, showed that A. digitatum clustered with high statistical confidence with two other Alcyonium species endemic to the Mediterranean Sea and the Southeast Pacific Ocean. Full article

A remarkable new deep-water skate, Leucoraja longirostris n. sp., is described based on eight specimens caught during different expeditions to the southern Madagascar Ridge in the southwestern Indian Ocean. The new species differs from all congeners by its remarkably long and acutely angled snout (horizontal preorbital length 17.2–22.6% TL vs. 8.5–11.9% TL and 4.2–6.1 vs. 1.7–3.5 times orbit length, snout angle 65–85° vs. 90–150°). Furthermore, it is apparently endemic to the Madagascar Ridge, distant from the known distribution areas of all congeners. In addition to L. fullonica and L. pristispina, L. longirostris n. sp. is also the only species with plain dorsal coloration. Furthermore, the new species is the only Leucoraja species with an external clasper component dike and, besides L. wallacei, the only one with four dorsal terminal (dt) cartilages. The shape of the accessory terminal 1 (at1) cartilage with four tips is also unique within the genus. A new approach for the visualization of the clasper characters is introduced based on 3D models of all skeletal and external features. This enables a much easier and much more precise interpretation of every single clasper component, of the entire structure, and, in particular, the relationship between external features and skeletal cartilages. A new English translation of the first diagnosis of Leucoraja is provided, along with a revised generic diagnosis and a key to the species of Leucoraja in the Indian Ocean. Full article

The rosy wolfsnail (Euglandina rosea) is a carnivorous, highly detrimental invader in many parts of the world. Although its negative impact on endemic island mollusk populations has been well documented, little is known about its range expansion in North America, where populations are not constrained by oceanic barriers. In this study, we present three compelling lines of evidence indicating significant ongoing and projected geographic range expansion of E. rosea: (1) We analyze the current range using data from iNaturalist; (2) we report on the demographics and persistence of an isolated extra-limital satellite population in Nashville, Tennessee, since its discovery in 2006; and (3) we employ a predictive ecological model that incorporates environmental variables indicating that the range expansion will continue into the central U.S. well beyond its present range. The findings of this study shed light on the underlying mechanisms behind the invasion of this species. First, the invasion is frequently associated with jump dispersal events, which are often linked to horticultural and landscaping activities. Second, the establishment and proliferation of satellite populations are facilitated by common landscape management practices, such as irrigation, as well as the urban heat island effect (UHI). Third, there is a possible synergistic interplay between the UHI effect and climate change that accelerates the range expansion via global warming. Full article

It has long been assumed that lichen-forming fungi have very large distribution ranges, and that endemic species are rare in this group of organisms. This is likely a consequence of the “everything small is everywhere” paradigm that has been traditionally applied to cryptogams. However, the description of numerous endemic species over the last decades, many of them in oceanic islands, is challenging this view. In this study, we provide another example, Xanthoparmelia ramosae, a species that is described here as new to science on the basis of morphological, chemical, and macroclimatic data, and three molecular markers (ITS rDNA, nuLSU rDNA, and mtSSU). The new species is endemic to the island of Gran Canaria but clusters into a clade composed exclusively of specimens collected in Eastern Africa, a disjunction that is here reported for the first time in lichen-forming fungi. Through the use of dating analysis, we have found that Xanthoparmelia ramosae diverged from its closely related African taxa in the Pliocene. This result, together with the reproductive strategy of the species, points to the Relict theory as a likely mechanism behind the disjunction, although the large gap in lichenological knowledge in Africa makes this possibility hard to explore any further. Full article

Masu salmon, Oncorhynchus masou (Brevoort 1856), a commercially important fish species endemic to the North Pacific Ocean, attained national second-level protected animal status in China in 2021. Despite this recognition, knowledge about the trophic ecology of this fish remains limited. This study investigated the diet diversity of fluviatile Masu salmon in the Mijiang River, China, utilizing the gastrointestinal tract environmental DNA (GITeDNA) metabarcoding and morphological identification. The results revealed a diverse prey composition, ranging from terrestrial and aquatic invertebrates to small fishes. The fluviatile Masu salmon in general consumed noteworthily more aquatic prey than terrestrial prey. There were much more prey taxa and a higher diet diversity detected by GITeDNA metabarcoding than by morphological identification. GITeDNA metabarcoding showed that larger and older Masu salmon consumed significantly more terrestrial insects than aquatic prey species did, with 7366 verses 5012 sequences in the group of ≥20 cm, 9098 verses 4743 sequences in the group of ≥100 g and 11,540 verses 729 sequences in the group of age 3+. GITeDNA metabarcoding also showed size- and age-related diet diversity, indicating that the dietary niche breadth and trophic diversity of larger and older Masu salmon increased with food resources expanding to more terrestrial prey. Terrestrial invertebrates of riparian habitats play a vital role in the diet of fluviatile Masu salmon, especially larger individuals, highlighting their importance in connecting aquatic and terrestrial food webs. Conservation plans should prioritize the protection and restoration of riparian habitats. This study advocates the combined use of GITeDNA metabarcoding and morphological observation for a comprehensive understanding of fish diet diversity. Full article

The human footprint on marine and terrestrial ecosystems of the planet has been substantial, largely due to the increase in the human population with associated activities and resource utilization. Oceanic islands have been particularly susceptible to such pressures, resulting in high levels of loss of biodiversity and reductions in the numbers and sizes of wild populations. One archipelago that has suffered from human impact has been the Juan Fernández (Robinson Crusoe) Archipelago, a Chilean national park located 667 km west of Valparaíso at 33° S. latitude. The park consists of three principal islands: Robinson Crusoe Island (48 km²); Santa Clara Island (2.2 km²); and Alejandro Selkirk Island (50 km²). The latter island lies 181 kms further west into the Pacific Ocean. No indigenous peoples ever visited or lived on any of these islands; they were first discovered by the Spanish navigator, Juan Fernández, in 1574. From that point onward, a series of European visitors arrived, especially to Robinson Crusoe Island. They began to cut the forests, and such activity increased with the establishment of a permanent colony in 1750 that has persisted to the present day. Pressures on the native and endemic flora increased due to the introduction of animals, such as goats, rats, dogs, cats, pigs, and rabbits. Numerous invasive plants also arrived, some deliberately introduced and others arriving inadvertently. At present, more than three-quarters of the endemic and native vascular species of the flora are either threatened or endangered. The loss of vegetation has also resulted in a loss of genetic variability in some species as populations are reduced in size or go extinct. It is critical that the remaining genetic diversity be conserved, and genomic markers would provide guidelines for the conservation of the diversity of the endemic flora. To preserve the unique flora of these islands, further conservation measures are needed, especially in education and phytosanitary monitoring. Full article

Although sandy islands in arid environments are vital protection sites for endemic species, they face constant natural and anthropogenic hazards, such as storm surge impacts and the occasional presence of off-road vehicles. Monitoring the sedimentary dune-beach displacement and balance is essential because sediment transportation usually does not depend on external sources, such as rivers. The latest generation of geomatic applications may be relevant to understanding coastal vulnerability due to their ability to acquire and process spatial data at unprecedented scales. The objective of this study was to analyze the sedimentary dynamics of a distinctive dune corridor on Altamura Island in the Gulf of California, Mexico. We compared three ultra-high spatial resolution digital surface models (DSMs) with geomorphic change detection (DoD), covering the 1150 m coastal stretch. We used light detection and ranging (LiDAR) data and analyzed changes in the coastline with the semi-automatic CoastSat tool. Although the orthomosaics and the DSM collected in April, June, and October 2021 show different conditions in sediment distribution along the beach-dune interface, depending on the direction and intensity of the wind, the two DoDs showed a constant sediment distribution balance of ~13 M m³ between April and June and June and October. LiDAR data along the 40-km length of the sandy island indicate that the entire island could present a similar sedimentation pattern between the dune and beach interface. The CoastSat data indicate a constant accretion of 125 m in the beach-ocean interface between 2015 and 2022. This study demonstrates that the sediment balance between the dune and the beach on arid sandy islands is vital for conserving their shoreline and all associated coastal ecosystems. Full article

The snail P. glabra is an endemic species in deep-sea chemosynthetic ecosystems of the Northwest Pacific Ocean. To obtain more genetic information on this species and provide the basis for subsequent whole-genome map construction, a genome survey was performed on this snail from the hydrothermal vent of Okinawa Trough. The genomic size of P. glabra was estimated to be 1.44 Gb, with a heterozygosity of 1.91% and a repeated sequence content of 69.80%. Based on the sequencing data, a draft genome of 1.32 Gb was assembled. Transposal elements (TEs) accounted for 40.17% of the entire genome, with DNA transposons taking the highest proportion. It was found that most TEs were inserted in the genome recently. In the simple sequence repeats, the dinucleotide motif was the most enriched microsatellite type, accounting for 53% of microsatellites. A complete mitochondrial genome of P. glabra with a total length of 16,268 bp was assembled from the sequencing data. After comparison with the published mitochondrial genome of Provanna sp. from a methane seep, 331 potential single nucleotide polymorphism (SNP) sites were identified in protein-coding genes (PCGs). Except for the cox1 gene, nad2, nad4, nad5, and cob genes are expected to be candidate markers for population genetic and phylogenetic studies of P. glabra and other deep-sea snails. Compared with shallow-water species, three mitochondrial genes of deep-sea gastropods exhibited a higher evolutionary rate, indicating strong selection operating on mitochondria of deep-sea species. This study provides insights into the genome characteristics of P. glabra and supplies genomic resources for further studies on the adaptive evolution of the snail in extreme deep-sea chemosynthetic environments. Full article

The Revillagigedo Archipelago, located in the Eastern Pacific Ocean, stands out for its unique biological richness and endemism. These islands remained uninhabited until the second half of the twentieth century, allowing a better conservation status than on other oceanic islands. However, the continuous introduction of potentially invasive alien plant species, and the lack of adequate control or eradication actions, jeopardize the conservation and restoration of these islands’ fragile ecosystems. We present the most complete vascular plant species inventory and an updated list of alien plant species of the Revillagigedo Archipelago, which was compiled through an extensive review of national and international plant collections and other sources. Our 272 species list includes 106 alien plant species (39.3%; 104 in Socorro, and 16 in Clarion): 67 (24.8%) are naturalized, 14 (5.2%) are casual aliens, and 25 (9.3%) subsist under cultivation. The documented alien species belong to 73 families. Annual and perennial herbs are the prevailing life forms in the alien flora, while naturalized species are primarily native to North America. The number of introduced species has increased significantly since the islands became inhabited. Many of the recently introduced species pose a major invasion risk like on other islands of the world. Full article

Climate change may shift species outside of their current climatic tolerances, which can be problematic for oceanic islands with limited options for species migration. Their alpine habitats, which represent islands within islands, are a special concern due to high endemism rates. The Canary Islands have two examples for such fragile ecosystems above 2000 m, on La Palma and Tenerife. This study contributes an assessment of the Canary Islands’ climatic habitat for 47 alpine plant species under observed climate change (1959–1989 versus 1990–2019 periods) as well as for future projections (2041–2060 and 2061–2080 periods). We analyzed the contraction of climatic habitats and migration requirements (biotic velocity) for each species to compensate for observed and predicted climate change. Our results suggest that temporary climate refugia exist on Tenerife but are insufficient on La Palma, where habitat loss due to historical climate change has already created an area of significant concern: the Cumbre Vieja Natural Park. On Tenerife, current alpine species can find suitable climate habitats in the caldera area and on the Teide-Pico Viejo volcano. That said, migration paths toward these refugia are long and complex, and human-assisted migration may be required. Species-specific statistics to support such management interventions are provided in this study. Full article

Adamussium colbecki is a scallop endemic of the Antarctic Ocean, the only modern survivor of the Adamussiini tribe and one of the few bivalves living in polar environments. Compared with other Antarctic animals, very little is known concerning the evolutionary adaptations which allow this species to thrive at sub-zero temperatures. Due to its local abundance and sensitivity to environmental changes, A. colbecki is an interesting model for studying the effects of pollution and climate change in the Antarctic Ocean. Here, we report, for the first time, the application of transcriptomic tools to the study of the effects of a short-to-medium term exposure to a +1.5 °C water temperature increase on three tissues. Although this approach did not highlight any significant change in response to thermal stress, we observed slight alterations in energetic metabolism and nutrient adsorption in the digestive gland, most likely linked with stabling in experimental tanks. The results of our study suggest that A. colbecki may be particularly vulnerable to the effects of climate change due to its complete inability to adapt to temperature increase at the transcriptomic level. Full article

Genetic monitoring of highly migratory endangered species is fundamental for effective management, particularly when they are shared internationally, and their populations need to be identified. A prime example is the green turtle, Chelonia mydas, whose genetic structure has been extensively studied in the Western Atlantic. Nevertheless, the identification of Cuban management units has remained uncertain, despite representing regionally significant nesting assemblages and occurring within a strategically central position. Compared to previous work, the current study used 800 bp mtDNA control region sequences and larger sample sizes (n = 189 from four nesting sites in SW Cuba). Of the 23 resolved haplotypes, nine were novel, fourteen were reported in Cuba for the first time, and eleven were endemic. Even though the distribution of nesting grounds barely spans 300 km, three management units were identified: Guanahacabibes-San Felipe (GUCB; with most of the endemic haplotypes), Isla de la Juventud (IJCB; with a predominance of haplotype CM-A13.1), and Cayo Largo (CLCB; with a haplotype profile closely related to Southern Caribbean rookeries). We discuss how the geographic distribution of mtDNA variation has likely been shaped by local and regional oceanic current patterns or derived from formerly hyperabundant regional populations. Genetic characterization of Cuban management units represents a significant contribution, filling critical knowledge gaps that have hampered the comprehensive mixed-stock analyses required to guide effective regional conservation strategies. Full article