Search Results (11)

Urban landscape lakes are increasingly at risk of nitrogen-induced eutrophication. Microbial nitrogen transformation plays a crucial role in reducing nitrogen levels in these lakes. However, the relationships between microbial communities, nitrogen functional genes, and nitrogen dynamics in water and sediment, along with their underlying mechanisms, remain unclear. In this study, we systemically investigated the spatial distributions of physicochemical indicators in the overlying water and sediment in a typical urban landscape lake, Zizhuyuan Park, and the microbial communities and nitrogen cycling genes in the surface sediments of the lake connection (CO), side (SI), and center (CE) were evaluated via macrogenetic sequencing technology to analyze their relationships with environmental factors. The results revealed that the concentrations of TN, NO₃⁻, and NH₄⁺ in the lake water were within the ranges of 1.36~2.84, 0.98~1.92, and 0.01~0.29 mg·L⁻¹, respectively. The concentrations of TN, NO₃⁻, and NH₄⁺ in the sediments ranged from 1.17~3.47 g·kg⁻¹, 0.88~1.94 mg·kg⁻¹, and 5.61~10.09 mg·kg⁻¹, respectively. The contents of NH₄⁺ in water, TN and NO₃⁻ in sediments were significantly different in spatial distribution (p < 0.05). At the CE site, the Shannon diversity index was the highest and differed significantly from the values at the SI and CO sites (p < 0.01).The sediments of Central Lake contained a total of 36 phyla and 1303 genera of microorganisms. Proteobacteria (62.88–64.83%) and Actinobacteria (24.84–26.62%) accounted for more than 85% of the microorganisms. Nitrospirae, Ignavibacteriae, and Bacteroidetes were significantly different (p < 0.05) at the CE, and Planctomycetes were significantly different (p < 0.05) at the CO. The functional gene nrfA exhibited the highest abundance, followed by napA, nosZ, nirS, hao, ureC, norB, nifH, nirK, hdhA, nifB, and amoA. The abundances of hao and nifH differed significantly at various locations in Central Lake (p < 0.05). The key nitrogen transformation processes in the sediments, ranked by contribution rate, were DNRA, denitrification, nitrification, ammoniation, nitrogen fixation, and anammox. The six nitrogen processes showed significant differences (p < 0.01) in spatial distribution. The pH, TN, NO₃⁻, NH₄⁺, C/N ratio of the sediment, and NH₄⁺ in the lake water impact the microbial community and nitrogen conversion process. The sediment should be cleaned regularly, and the water cycle should be strengthened in urban landscape lakes to regulate microorganisms and genes and ultimately reduce nitrogen and control eutrophic water. This study can provide a reference for improving and managing lake water environments in urban landscapes. Full article

Dwarf bamboo (Fargesia denudata) is a crucial food source for the giant pandas. With its shallow root system and rapid growth, dwarf bamboo is highly sensitive to drought stress and nitrogen deposition, both major concerns of global climate change affecting plant growth and rhizosphere environments. However, few reports address the response mechanisms of the dwarf bamboo rhizosphere environment to these two factors. Therefore, this study investigated the effects of drought stress and nitrogen deposition on the physicochemical properties and microbial community composition of the arrow bamboo rhizosphere soil, using metagenomic sequencing to analyze functional genes involved in carbon and nitrogen cycles. Both drought stress and nitrogen deposition significantly altered the soil nutrient content, but their combination had no significant impact on these indicators. Nitrogen deposition increased the relative abundance of the microbial functional gene nrfA, while decreasing the abundances of nirK, nosZ, norB, and nifH. Drought stress inhibited the functional genes of key microbial enzymes involved in starch and sucrose metabolism, but promoted those involved in galactose metabolism, inositol phosphate metabolism, and hemicellulose degradation. NO₃⁻-N showed the highest correlation with N-cycling functional genes (p < 0.01). Total C and total N had the greatest impact on the relative abundance of key enzyme functional genes involved in carbon degradation. This research provides theoretical and technical references for the sustainable management and conservation of dwarf bamboo forests in giant panda habitats under global climate change. Full article

Straw returning enhances soil fertility and increases corn yield, but the impact on soil fertility varies with different incorporation methods. To explore the optimal straw-returning method, this study, based on a long-term field experiment, investigated the following different corn-straw-returning methods: deep plowing and straw returning (B), rotary tillage and straw returning (RT), crushing and mixing straw returning (TM), pulverized cover straw returning (C), high-stubble-retention straw returning (LHS), strip cover (S), and flat no-tillage without straw returning (CK). High-throughput sequencing technology was employed to analyze the soil bacterial community composition and structural changes under different straw-returning methods. The study further explored the relationships between the soil bacterial community and nutrient content. The results indicated that different straw-returning methods altered the composition and structure of the soil bacterial community. The TM treatment significantly increased the richness and diversity of the soil bacterial communities. Shredding and covering (C and TM) effectively improved the soil nutrient content and bacterial community structure. In the C treatment, the abundance of Blastococcus, Nocardioides, and Microvirga increased the most, by 241.02%, 77.79%, and 355.08%, respectively, compared with CK. In the TM treatment, Pseudarthrobacter showed the highest abundance, increasing by 343.30%. The genes involved in soil carbon hydrolysis (pulA), nitrification (hao), organic nitrogen degradation and synthesis (gudB), and the nitrogen limitation response (glnR) significantly decreased by 56.21%, 78.75%, 66.46%, and 67.40%, respectively, in the C treatment. The genes involved in soil carbon hydrolysis (IMA), carbon fixation (pccB-A), methane metabolism (moxF), nitrate reduction in soil (nirD), organic nitrogen degradation and synthesis (gdh, ureAB, ureE), and phosphate absorption (glpT) significantly increased by 93.37%, 92.68%, 95.00%, 23.42%, 35.40%, 114.21%, 59.14%, and 75.86%, respectively, in the C treatment. The nitrate reduction gene (nrfA) significantly increased by 80.27% in the TM treatment. Therefore, we concluded that straw primarily stimulates the activity of bacterial communities and regulates the bacterial community by changing the relative abundance of the soil microorganisms and functional genes, thereby improving the soil nutrient content. This study considered pulverized cover straw returning and crushing and mixing straw returning to be the most reasonable methods. Full article

Excess nitrogen in agricultural drainage poses a serious threat to the water quality safety of the Yellow River basin. Utilizing aquatic plants to modify the rhizosphere microbial community structure and facilitate nitrogen transformation is a crucial strategy for mitigating regional water eutrophication. We here compare key processes of nitrogen transformation occurring in the rhizosphere of sediments of a ditch artificially planted with a mix of species (Phragmites australis, Typha orientalis, Nymphaea tetragon) with the rhizosphere of a ditch occupied by naturally occurring aquatic vegetation, dominated either by P. australis or T. orientalis. Our results revealed a species effect, with an increased denitrification rate (DR) and dissimilatory nitrate reduction to ammonium rate (DNRAR) in the cultivated ditch for P. australis, compared to the naturally occurring T. orientalis vegetation. The nitrogen fixation rate (NFR) increased in the artificial setting with T. orientalis in comparison to natural P. australis vegetation. The richness of the bacterial community and the relative abundances of Bacteroidota, Firmicutes, and Geobacter were significantly greater in the rhizosphere of the artificially cultivated ditch due a greater availability in nitrogen and organic carbon. In the artificially cultivated ditch, the dominant functional genes affecting DRNARs in the rhizosphere sediments of P. australis were nrfC and nrfA, whereas DRs were driven mainly by norB and napA, which were influenced by the nitrogen and carbon levels. The dominant functional genes affecting NFRs in the rhizosphere sediments of T. orientalis were nifD, nifK, and nifH. Our results provide a scientific basis for the use of aquatic plants for mitigating excess nitrogen levels in agricultural drainage. Full article

The perennial gramineous grass Miscanthus condensatus functions as a major pioneer plant in colonizing acidic volcanic deposits on Miyake-jima, Japan, despite a lack of nitrogen nutrients. The nitrogen cycle in the rhizosphere is important for the vigorous growth of M. condensatus in this unfavorable environment. In the present study, we identified the nitrogen-cycling bacterial community in the M. condensatus rhizosphere on these volcanic deposits using a combination of metagenomics and culture-based analyses. Our results showed a large number of functional genes related to denitrification and dissimilatory nitrate reduction to ammonium (DNRA) in the rhizosphere, indicating that nitrate-transforming bacteria dominated the rhizosphere biome. Furthermore, nitrite reductase genes (i.e., nirK and nirS) related to the denitrification and those genes related to DNRA (i.e., nirB and nrfA) were mainly annotated to the classes Alpha-proteobacteria, Beta-proteobacteria, and Gamma-proteobacteria. A total of 304 nitrate-succinate-stimulated isolates were obtained from the M. condensatus rhizosphere and were classified into 34 operational taxonomic units according to amplified 16S rRNA gene restriction fragment pattern analysis. Additionally, two strains belonging to the genus Cupriavidus in the class Beta-proteobacteria showed a high in vitro denitrifying activity; however, metagenomic results indicated that the DNRA-related rhizobacteria appeared to take a major role in the nitrogen cycle of the M. condensatus rhizosphere in recent Miyake-jima volcanic deposits. This study elucidates the association between the Miscanthus rhizosphere and the nitrate-reducing bacterial community on newly placed volcanic deposits, which furthers our understanding of the transformation of nitrogen nutrition involved in the early development of vegetation. Full article

The nitrogen cycle is a biogeochemical cycle primarily associated with the microbial activity that occurs in various environments, including soil. Various genes related to the nitrogen cycle have been studied for different purposes by many researchers; therefore, the polymerase chain reaction (PCR) conditions and gene compositions differ among reports, making comparisons difficult. In this study, we compare the PCR methods to amplify 13 nitrogen cycle-related genes (amo (amoA and amoB), norB (cnorB and qnorB), hzs, napA, narG, nifH, nirK, nirS, nosZ, nrfA, and nxrA) in the soil samples collected from four land use types and selected a method with excellent applicability. However, the PCR method for five nitrogen cycle-related genes (amoC, hao, hzo, nirB, and nxrB) could not be presented. In addition, the nitrogen cycle-related genes from the four land use types (field, forest, bare land, and grassland) and the seasonally collected samples were analyzed and discussed. In the grassland samples, all the nitrogen cycle-related genes reviewed were amplified. These results vary from those of the field, forest, and bare land samples, and it was estimated that grassland, among the land use types, could play an important role in the nitrogen cycle in soil. However, an association between the seasons and the rainy season was not confirmed. Thus, this study may be used for future research in various fields related to the nitrogen cycle. Full article

Constructed wetlands have been applied to micro-polluted rivers and lakes. However, they often show poor nitrogen removal efficiency due to insufficient carbon sources for complete denitrification in the waters. In this study, a vertical-flow wetland system was built, in which reeds as a carbon source were added in the middle layer of the substrate. Thereby, the effect of the reed carbon source on denitrification of micro-polluted rivers and lakes with a low C/N ratio in the wetland and the denitrification mechanism were studied. The results showed that the concentrations of NH₄⁺-N, NO₃⁻-N and NO₂⁻-N in the effluent of the constructed wetland were reduced to 0.17–0.35, 0.20–0.49 and 0.01–0.02 mg/L after adding the reed carbon source, and the removal efficiencies of the system for NH₄⁺-N and NO₃⁻-N reached 93.84% and 84.69%, respectively. The abundances of nirK, nirS, hzo and nrfA genes in the wetland substrate increased by 95.51%, 54.96%, 52.89% and 731.95%, respectively, which was considered to be related to the enhanced denitrification, anammox and dissimilatory nitrate reduction to ammonium of the wetland system. Reed planting promoted the increased abundances of amoA and nxrB genes, which might play a positive role in enhancing nitrification in wetland systems. The result of this study may provide a theoretical basis for the ecological restoration of low C/N micro-polluted water bodies. Full article

Sediment denitrification, anaerobic ammonium oxidation (anammox), and nitrate dissimilation to ammonium (DNRA) play an important role in controlling the dynamics of nitrates (NO_x⁻) and their fate in estuarine and coastal ecosystems. However, the effects of land-use change on NO_x⁻ reduction processes in mangrove sediments are still unclear. Here, we used a mud experiment method combined with a ¹⁵N stable isotope tracer method to study the mechanism and ecological environment of the change of land use pattern on the sediment NO_x⁻ reduction processes in mangrove wetlands. Our study showed that most physicochemical parameters, NO_x⁻ reduction rates, and their gene abundances varied considerably. The denitrification, anammox, and DNRA rates in mangrove sediment cores were in a range of 1.04–4.24 nmol g⁻¹ h⁻¹, 0.14–0.36 nmol g⁻¹ h⁻¹, and 0–2.72 nmol g⁻¹ h⁻¹, respectively. The denitrification, anammox, and DNRA rates in aquaculture sediment cores were in a range of 1.06–10.96 nmol g⁻¹ h⁻¹, 0.13–0.37 nmol g⁻¹ h⁻¹, and 0–1.96 nmol g⁻¹ h⁻¹, respectively. The highest values of denitrification, anammox, DNRA, the contribution of denitrification and DNRA to total NO_x⁻ reduction (DEN% and DNRA%), gene abundances (nirS, Amx 16S rRNA, and nrfA), total organic carbon (TOC), total nitrogen (TN), and TOC/TN in sediments were generally found in the top layer (0–5 cm) and then decreased with depth, while the contribution of anammox to total NO_x⁻ reduction (ANA%), Fe²⁺, and Fe²⁺/Fe³⁺ were generally increased with sediment depth in both mangrove and aquaculture ecosystems. When mangrove wetlands are transformed into pools, some properties (including TOC, TN, and Fe³⁺), DNRA rates, DRNA%, and nrfA gene abundances were decreased, while some properties (including NH₄⁺, TOC/TN, Fe²⁺, and Fe²⁺/Fe³⁺), denitrification rates, DEN%, nirS, and ANAMMOX 16S gene abundances were increased. Sediment organic matter (TOC and TN) content and Fe²⁺ both affected NO₃⁻ reduction rates, with organic matter the most prominent factor. Thus, aquaculture reclamation enhances N loss while reducing N retention in sediments of mangrove wetlands, which plays an important role in regulating the source and fate of reactive N in mangrove ecosystems. Full article

The quantity of grass-root exudates varies by season, suggesting temporal shifts in soil microbial community composition and activity across a growing season. We hypothesized that bacterial community and nitrogen cycle-associated prokaryotic gene expressions shift across three phases of the growing season. To test this hypothesis, we quantified gene and transcript copy number of nitrogen fixation (nifH), ammonia oxidation (amoA, hao, nxrB), denitrification (narG, napA, nirK, nirS, norB, nosZ), dissimilatory nitrate reduction to ammonia (nrfA), and anaerobic ammonium oxidation (hzs, hdh) using the pre-optimized Nitrogen Cycle Evaluation (NiCE) chip. Bacterial community composition was characterized using V₃-V₄ of the 16S rRNA gene, and PICRUSt2 was used to draw out functional inferences. Surprisingly, the nitrogen cycle genes and transcript quantities were largely stable and unresponsive to seasonal changes. We found that genes and transcripts related to ammonia oxidation and denitrification were different for only one or two time points across the seasons (p < 0.05). However, overall, the nitrogen cycling genes did not show drastic variations. Similarly, the bacterial community also did not vary across the seasons. In contrast, the predicted functional potential was slightly low for May and remained constant for other months. Moreover, soil chemical properties showed a seasonal pattern only for nitrate and ammonium concentrations, while ammonia oxidation and denitrification transcripts were strongly correlated with each other. Hence, the results refuted our assumptions, showing stability in N cycling and bacterial community across growing seasons in a natural grassland. Full article

This study analyzed the multivariate flood risk for the river Thames at Kingston based on historical flood data from the National River Flow Archive (NRFA) website. The bivariate risk analysis framework was prepared from the joint return periods of the peak flow (m³/s) and 3-day annual maximum flow (m³/s) flood pair. A total of 137 samples of flood pairs from 1883 to 2019 were adopted for risk analysis. The multivariate return periods were characterized depending on the quantification of the bivariate flood frequency analysis of the pair through copulas methods. The unknown parameter of each copula was estimated using the method-of-moment (MOM) estimator based on Kendall’s tau inversion, in which the Clayton copula performed best to model the dependence of the two flood variables. Then, the bivariate hydrologic risk was characterized based on the joint return period in AND, established from the Clayton copula method. The results reveal that the flood pair would keep a constant hydrologic risk value for some time then moderately decrease as the 3-day AMAX flow increases from 700 m³/s. This hydrologic risk indicator was analyzed under four service time scenarios and three peak flows whose return periods were positioned at 50, 100, and 150 years. The outcomes from the bivariate risk analysis of the flood pairs can be used as decision support during the design of flood defenses and hydraulic facilities. Full article

Dissimilatory nitrate reduction to ammonium (DNRA) plays an important role in controlling nitrogen (N) loading in lake ecosystems. However, studies on the linkage between DNRA bacterial community structure and lake eutrophication remain unclear. We examined the community and abundance of DNRA bacteria at six basins of four shallow lakes with different degrees of eutrophication in China. Measurements of the different forms of N and phosphorus (P) in the water column and interstitial water as well as total organic carbon (TOC) and sulfide in the sediments in summer (July 2016) were performed. The nutritional status of Lake Chaohu was more serious than that of the lakes in Wuhan, including Lake Qingling, Lake Houguan, and Lake Zhiyin by comparing geochemical and physical parameters. We found a higher abundance of the nrfA gene, which is a function gene of DNRA bacteria in sediments with higher contents of TOC and sulfide. Moreover, nitrate was a significant factor influencing the DNRA bacterial community structure. A significant difference of the DNRA bacterial community structure between Lake Chaohu and the lakes in Wuhan was discovered. Furthermore, DNRA bacterial abundance and community positively correlated with NH₄⁺ and Chl a concentrations in Lake Chaohu, in which a percent abundance of dominant populations varied along eutrophication gradients. Overall, the abundance and community structure of the DNRA bacteria might be important regulators of eutrophication and cyanobacteria bloom in Lake Chaohu. Full article