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Keywords = non-indigenous algae

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16 pages, 2518 KB  
Article
Application of Environmental DNA Metabarcoding to Differentiate Algal Communities by Littoral Zonation and Detect Unreported Algal Species
by Sergei Bombin, Andrei Bombin, Brian Wysor and Juan M. Lopez-Bautista
Phycology 2024, 4(4), 605-620; https://doi.org/10.3390/phycology4040033 - 18 Dec 2024
Viewed by 1888
Abstract
Coastal areas are the most biologically productive and undoubtedly among the most complex ecosystems. Algae are responsible for most of the gross primary production in these coastal regions. However, despite the critical importance of algae for the global ecosystem, the biodiversity of many [...] Read more.
Coastal areas are the most biologically productive and undoubtedly among the most complex ecosystems. Algae are responsible for most of the gross primary production in these coastal regions. However, despite the critical importance of algae for the global ecosystem, the biodiversity of many algal groups is understudied, partially due to the high complexity of morphologically identifying algal species. The current study aimed to take advantage of the recently developed technology for biotic community assessment through the high-throughput sequencing (HTS) of environmental DNA (eDNA), known as the “eDNA metabarcoding”, to characterize littoral algal communities in the Northern Gulf of Mexico (NGoM). This study demonstrated that eDNA metabarcoding, based on the universal plastid amplicon (UPA) and part of the large nuclear ribosomal subunit (LSU) molecular markers, could successfully differentiate coastal biotic communities among littoral zones and geographical locations along the shoreline of the NGoM. The statistical significance of separation between biotic communities was partially dependent on the dissimilarity calculation metric; thus, the differentiation of algal community structure according to littoral zones was more distinct when phylogenetic distances were incorporated into the diversity analysis. Current work demonstrated that the relative abundance of algal species obtained with eDNA metabarcoding matches previously established zonation patterns for these species. In addition, the present study detected molecular signals of 44 algal species without previous reports for the Gulf of Mexico, thus providing an important, molecular-validated baseline of species richness for this region. Full article
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17 pages, 3120 KB  
Article
Reconstructing Historical Changes in the Macroalgal Vegetation of a Central Mediterranean Coastal Area Based on Herbarium Collections
by Fabio Rindi, Giulia Bellanti, Anna Annibaldi and Stefano Accoroni
Diversity 2024, 16(12), 741; https://doi.org/10.3390/d16120741 - 30 Nov 2024
Cited by 2 | Viewed by 1740
Abstract
Well-conserved herbarium specimens of marine macroalgae represent a valuable resource for multiple types of investigation. When algal herbaria host specimens collected over long time spans from a certain geographic area, they have the potential to document historical changes in the benthic vegetation of [...] Read more.
Well-conserved herbarium specimens of marine macroalgae represent a valuable resource for multiple types of investigation. When algal herbaria host specimens collected over long time spans from a certain geographic area, they have the potential to document historical changes in the benthic vegetation of that area. In this study, historical changes in the macroalgal vegetation of a central Mediterranean coast (Conero Riviera, Adriatic Sea) were assessed based on a critical re-examination of the herbarium of Irma Pierpaoli (collection period 1925–1951) and the phycological herbarium of the Polytechnic University of Marche (ANC ALG, collections made mostly in the period 1999–2024). For both herbaria, the identifications of many specimens were revised based on the current species circumscriptions. The comparison indicates that some major changes occurred between the two collection periods: a switch in the morphological functional structure of the vegetation (increase in the number of filamentous species, decrease in leathery macrophytes, and the near disappearance of calcareous articulated algae), local extinction of some species (at least 23, possibly more), and introduction of 11 species of non-indigenous seaweeds. Anthropogenic impacts (habitat destruction, increase in sediment load, and impacts of port activities and maritime traffic) are considered the main factors responsible for these changes. Full article
(This article belongs to the Special Issue Herbaria: A Key Resource for Plant Diversity Exploration)
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12 pages, 5096 KB  
Article
Ecology and Phenology of the Subtidal Brown Alga Sargassum furcatum (Ochrophyta, Fucales), a Likely Non-Indigenous Species from the Mediterranean Sea
by Giuliana Marletta, Andrea Lombardo and Donatella Serio
J. Mar. Sci. Eng. 2024, 12(4), 640; https://doi.org/10.3390/jmse12040640 - 10 Apr 2024
Cited by 3 | Viewed by 2240
Abstract
This study provides new insights regarding the ecology and phenology of the likely non-indigenous canopy-forming species Sargassum furcatum on the central-eastern coast of Sicily (Italy, Central Mediterranean). This species was described for St. Thomas (Virgin Islands), and it was reported for the first [...] Read more.
This study provides new insights regarding the ecology and phenology of the likely non-indigenous canopy-forming species Sargassum furcatum on the central-eastern coast of Sicily (Italy, Central Mediterranean). This species was described for St. Thomas (Virgin Islands), and it was reported for the first time in the Mediterranean in 1995 in the Chafarinas islands (Spain, western Mediterranean). After the first report, this species was found in 2021 in several sites located along the eastern coast of Sicily (Italy), along the French Mediterranean coastline, in Corsica, and recently also in the Aeolian Islands (Italy). No phenological studies on this species have been ever carried out in the Mediterranean Sea. To conduct this study, a visual census activity was performed in three sites along the Ionian coast of Sicily throughout 2023, during which the length of the main axis of S. furcatum specimens was measured and the frequency of findings of the species during the year was noted. In this study, it was observed that S. furcatum shows a wide adaptability in terms of range of depth, temperature, light exposure, and type of substrate. Since the distribution of this species is mostly centralized in the western Atlantic Ocean, it is likely that S. furcatum entered the Mediterranean through the Gibraltar Strait. Consequently, the entrance of this species in this Basin could be further proof of the ongoing seawater warming and tropicalization of Mediterranean waters. From this point of view, it is important to keep monitoring the dynamics of S. furcatum in the Mediterranean Sea in order to understand its putative impacts on autochthonous communities. Full article
(This article belongs to the Section Marine Biology)
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17 pages, 1823 KB  
Article
eDNA Metabarcoding Analysis as Tool to Assess the Presence of Non-Indigenous Species (NIS): A Case Study in the Bilge Water
by Teresa Maggio, Federica Cattapan, Manuela Falautano, Daniel Julian, Roberto Malinverni, Elena Poloni, Walter Sanseverino, Sara Todesco and Luca Castriota
Diversity 2023, 15(11), 1117; https://doi.org/10.3390/d15111117 - 27 Oct 2023
Cited by 4 | Viewed by 3670
Abstract
One of the most important causes of biodiversity loss are non-indigenous species (NIS), in particular invasive ones. The dispersion of NIS mainly depends on anthropogenic activities such as maritime traffic, which account for almost half of the total NIS introduction in the European [...] Read more.
One of the most important causes of biodiversity loss are non-indigenous species (NIS), in particular invasive ones. The dispersion of NIS mainly depends on anthropogenic activities such as maritime traffic, which account for almost half of the total NIS introduction in the European seas, as reported by the European Environmental Agency. For this reason, NIS management measures are mainly focused on commercial ports (i.e., ballast water management and Marine Strategy Framework Directive monitoring), underestimating the role of marinas and tourist harbors; these host small vessels (<20 m), such as recreational, fishery, and sail ones without ballast waters, but are also responsible for NIS arrival and spread through the bilge water as well as from hull fouling. With the aim of paying attention to marinas and tourist harbors and validating an innovative molecular methodology for NIS surveillance and monitoring, in the present work, eDNA metabarcoding of cytochrome oxidase subunit I (COI) was applied to both bilge waters and adjacent ones to assess species composition and particularly NIS presence. A total of 140 OTUs/species with extra-Mediterranean distribution were found in the bilge samples; several of these are most likely ascribed to food contamination (e.g., Salmo salar). Excluding food contamination species, twelve of these found in the bilge waters were already known as NIS in the Mediterranean Sea, belonging to algae, mollusks, crustaceans, annelids, echinoderms, and fishes. Nine of these species are new to Italian waters. The results obtained in the present work support the importance of NIS monitoring in marinas and small harbors, particularly in the bilge waters, through eDNA metabarcoding, having detected several potential NIS that otherwise would not have been discovered. Full article
(This article belongs to the Section Marine Diversity)
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13 pages, 1944 KB  
Article
The Introduction of the Asian Red Algae Melanothamnus japonicus (Harvey) Díaz-Tapia & Maggs in Peru as a Means to Adopt Management Strategies to Reduce Invasive Non-Indigenous Species
by Julissa J. Sánchez-Velásquez, Lorenzo E. Reyes-Flores, Carmen Yzásiga-Barrera and Eliana Zelada-Mázmela
Diversity 2021, 13(5), 176; https://doi.org/10.3390/d13050176 - 21 Apr 2021
Cited by 6 | Viewed by 4645
Abstract
Early detection of non-indigenous species is crucial to reduce, mitigate, and manage their impacts on the ecosystems into which they were introduced. However, assessment frameworks for identifying introduced species on the Pacific Coast of South America are scarce and even non-existent for certain [...] Read more.
Early detection of non-indigenous species is crucial to reduce, mitigate, and manage their impacts on the ecosystems into which they were introduced. However, assessment frameworks for identifying introduced species on the Pacific Coast of South America are scarce and even non-existent for certain countries. In order to identify species’ boundaries and to determine the presence of non-native species, through morphological examinations and the analysis of the plastid ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (rbcL-5P) gene, we investigated the phylogenetic relationships among species of the class Florideophyceae from the coast of Ancash, Peru. The rbcL-5P dataset revealed 10 Florideophyceae species distributed in the following four orders: Gigartinales, Ceramiales, Halymeniales, and Corallinales, among which the Asian species, Melanothamnus japonicus (Harvey) Díaz-Tapia & Maggs was identified. M. japonicus showed a pairwise divergence of 0% with sequences of M. japonicus from South Korea, the USA, and Italy, the latter two being countries where M. japonicus has been reported as introduced species. Our data indicate a recent introduction event of M. japonicus in Peru, and consequently, the extension of its distribution into South America. These findings could help to adopt management strategies for reducing the spread and impact of M. japonicus on the Pacific Coast of South America. Full article
(This article belongs to the Special Issue Aquatic Organisms Research with DNA Barcodes)
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10 pages, 3550 KB  
Article
Settlement and Spreading of the Introduced Seaweed Caulacanthus okamurae (Rhodophyta) in the Mediterranean Sea
by Antonella Petrocelli, Marion A. Wolf, Ester Cecere, Katia Sciuto and Adriano Sfriso
Diversity 2020, 12(4), 129; https://doi.org/10.3390/d12040129 - 30 Mar 2020
Cited by 9 | Viewed by 3776
Abstract
In this study, we report the first finding of the non-indigenous seaweed Caulacanthus okamurae (Rhodophyta) in the Ionian and Adriatic Seas (Mediterranean). Specimens were identified through molecular analyses based on the plastid ribulose-1,5-bisphosphate carboxylase/oxygenase (rbcL) marker. The sequences obtained during this [...] Read more.
In this study, we report the first finding of the non-indigenous seaweed Caulacanthus okamurae (Rhodophyta) in the Ionian and Adriatic Seas (Mediterranean). Specimens were identified through molecular analyses based on the plastid ribulose-1,5-bisphosphate carboxylase/oxygenase (rbcL) marker. The sequences obtained during this study represent the first molecular evidence of the presence of this taxon in the Mediterranean Sea. Stable populations have been detected in some areas of the Mar Piccolo of Taranto (Italy) and in the whole lagoon of Venice, forming dense patches of low turf that reach high biomasses. Turf-forming algae are common in the intertidal zones of tropical regions, but are rare in temperate ones. The particular environmental conditions of transitional water systems, such as the Mar Piccolo of Taranto and the Venice Lagoon, together with the water temperature increase observed in the last years could have favored the settlement and spread of this introduced species. Full article
(This article belongs to the Special Issue Biodiversity of Macroalgae)
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