Search Results (27)

Understanding the biodiversity of aquatic communities and the underlying mechanisms that shape biodiversity patterns and community dynamics is crucial for the effective conservation and management of freshwater ecosystems. However, traditional survey methods often fail to comprehensively capture species diversity, particularly for low-abundance taxa. Moreover, studies integrating both metazoan and fish communities at fine spatial scales remain limited. To address these gaps, we employed a multi-marker eDNA metabarcoding approach, targeting both the 12S and 18S rRNA gene regions, to comprehensively investigate the composition of metazoan and fish communities in the Yujiang River. A total of 12 metazoan orders were detected, encompassing 15 families, 21 genera, and 19 species. For the fish community, 32 species were identified, belonging to 25 genera, 10 families, and 7 orders. Among these, Adula falcatoides and Coptodon zillii were identified as the most prevalent and abundant metazoan and fish species, respectively. Notably, the most prevalent fish species, C. zillii and Oreochromis niloticus, are both recognized as invasive species. The Bray–Curtis distance of metazoa (average: 0.464) was significantly lower than that of fish communities (average: 0.797), suggesting higher community heterogeneity among fish assemblages. Beta-diversity decomposition indicated that variations in the metazoan and fish communities were predominantly driven by species replacement (turnover) (65.4% and 70.9% for metazoa and fish, respectively) rather than nestedness. Mantel tests further revealed that species turnover in metazoan communities was most strongly influenced by water temperature, while fish community turnover was primarily affected by water transparency, likely reflecting the physiological sensitivity of metazoans to thermal gradients and the dependence of fish on visual cues for foraging and habitat selection. In addition, a co-occurrence network of metazoan and fish species was constructed, highlighting potential predator-prey interactions between native species and Corbicula fluminea, which emerged as a potential keystone species. Overall, this study demonstrates the utility of multi-marker eDNA metabarcoding in characterizing aquatic community structures and provides new insights into the spatial dynamics and species interactions within river ecosystems. Full article

The fungal family Mortierellaceae represents ubiquitous and ecologically significant components of soil ecosystems across terrestrial habitats. Through an integrative taxonomic approach combining multi-locus phylogenetic analyses (ITS, LSU, SSU rDNA, RPB1, and Act) with detailed morphological examinations of rhizosphere soil isolates, four novel species within this family were proposed. This study elucidates the morphological distinctions of novel species from allied species and the phylogenetic relationships among the novel and existing species within the family. Linnemannia rotunda sp. nov. (closely related to L. longigemmata) is distinguished by its globose sporangia and sporangiospores. Mortierella acuta sp. nov. (clustering with M. yunnanensis) is characterized by spiky collarettes. Mortierella oedema sp. nov. (a sister to M. macrocystis) exhibits distinctive ampulliform swellings. Mortierella tibetensis sp. nov. (clustering with M. parvispora) is named for its geographic origin in Tibet. As the eighth installment in a systematic investigation of early diverging fungal groups in China, this work expands the global taxonomic inventory of Mortierellaceae to 148 species, underscoring the ongoing discovery of cryptic biodiversity within this ecologically pivotal group. Full article

Habitat degradation poses a critical threat to the Malabar slender loris (Loris lydekkerianus malabaricus), yet little is known about its microhabitat requirements in intact forest. In Aralam Wildlife Sanctuary, we combined nocturnal trail surveys (337 loris sightings) with plotless sampling of 2830 trees (86 species from 35 families) to characterize both vegetation structure and loris presence. Our results show that lorises occur almost exclusively in mildly degraded wet evergreen and secondary moist deciduous subcanopies, where understory trees and climber networks provide continuous pathways. Individuals are most often encountered at heights of 5–15 m—ascending into higher strata as the night progresses—reflecting a balance between foraging access and predator avoidance. Substrate analysis revealed strong preferences for twigs ≤ 1 cm (36.98%) and small branches 2–5 cm in diameter, oriented obliquely to minimize energetic costs and maintain stability during slow, deliberate arboreal locomotion. Day-sleeping sites were overwhelmingly located within dense tangles of lianas on large-girth trees, where intertwined stems and thorny undergrowth offer concealment from both mammalian and avian predators. Vegetation surveys documented a near-equal mix of evergreen (50.6%) and deciduous (49.4%) species—including 26 endemics (18 restricted to the Western Ghats)—with Aporosa cardiosperma emerging as the most abundant riparian pioneer, suggesting both ecological resilience and potential simplification in fragmented patches. Complementing field observations, our recent habitat-suitability modeling in Aralam indicates that broad-scale climatic and anthropogenic factors—precipitation patterns, elevation, and proximity to roads—are the strongest predictors of loris occupancy, underscoring the interplay between landscape-level processes and microhabitat structure. Together, these findings highlight the imperative of multi-strata forest restoration—planting insect-hosting native trees, maintaining continuous canopy and climber networks, and integrating small “mini-forest” modules—to recreate the structural complexity vital for slender loris conservation and the broader resilience of Western Ghats biodiversity. Full article

Anoplophora horsfieldii Hope, a potential pest of the Cerambycidae family, is widely distributed throughout China, where it can cause damage to various living tree species. It has emerged as a critical invasive organism threatening China’s agricultural and forestry production as well as ecological security. This study comprehensively analyzed the key environmental factors influencing the geographical distribution of A. horsfieldii and its spatiotemporal dynamics by integrating multi-source environmental data and employing ecological niche modeling. Model validation demonstrated high reliability and accuracy of our predictions, with an area under the receiver operating characteristic curve (AUC) value of 0.933, Kappa coefficient of 0.704, and true skill statistic (TSS) reaching 0.960. Our analysis identified four dominant environmental factors governing the distribution of A. horsfieldii: mean diurnal range (Bio2), temperature annual range (Bio7), precipitation of driest quarter (Bio17), and precipitation of coldest quarter (Bio19). Under current climatic conditions, the total potential suitable distribution area for A. horsfieldii was estimated at 212.394 × 10⁴ km², primarily located in central, southern, eastern, southwestern, and northwestern China. Future projections under three climate scenarios (SSP1-2.6, SSP2-4.5, and SSP5-8.5) suggest significant reductions in highly and moderately suitable habitats, while low-suitability areas may expand into central, eastern, and southwestern regions, with Chongqing, Henan, and Anhui potentially becoming new suitable habitats. Concurrently, the centroid coordinates of suitable habitats exhibited a directional shift toward Guangdong Province, with the overall distribution pattern demonstrating a spatial transition characterized by movement from inland to coastal areas and from higher to lower latitudes. This study provides scientific theoretical support for forestry authorities in controlling the spread of A. horsfieldii, while establishing a solid foundation for future ecological conservation and biosecurity strategies. The findings offer both theoretical insights and practical guidance for pest management and ecosystem protection. Full article

Alternaria includes endophytes, saprophytes, and pathogens affecting both plants and animals, with a global distribution across various hosts and substrates. It is categorized into 29 sections, each defined by a type species and six monophyletic lineages. The Alternaria section Nimbya comprises 10 species primarily associated with the families Juncaceae and Cyperaceae, functioning as either saprophytes or plant pathogens. In this study, 189 fungal strains were collected from multiple locations across six provinces in Iran. The isolates were initially classified based on morphological characteristics and ISSR-PCR molecular marker banding patterns. Multi-gene phylogenetic analyses of 38 selected strains, using ITS–rDNA, GAPDH, TEF1, RPB2, and Alt a 1 gene sequences, combined with morphological data, led to the identification of 13 species, including eight new species, namely Alternaria caricifolia, A. cyperi, A. juncigena, A. junci-inflexi, A. persica, A. schoenoplecti, A. salkadehensis, and A. urmiana. In addition, this work identified new host associations (matrix nova) for three previously known species: A. caricicola on Cyperus sp., A. cypericola on Eleocharis sp., and A. junci-acuti on Carex sp. The study provides detailed morphological descriptions and illustrations of all identified species, discusses their habitats, distribution, and phylogenetic relationships within section Nimbya, and presents a key for species identification within this section in Iran. Furthermore, these findings highlight the significance of studying fungal biodiversity in Iran and contribute to a better understanding of species distribution and host range within the Alternaria section Nimbya. Full article

The Family Torulaceae belongs to the Order Pleosporales (Class Dothideomycetes) and mainly comprises saprobes. The taxa are widely distributed in both terrestrial and aquatic habitats. In this study, we collected three dead leaf specimens of Carex baccans and two submerged wood specimens in Yunnan Province, China. A biphasic approach of morphological examination and multi-locus phylogenetic analyses conducted for internal transcribed spacer region ITS1-5.8S-ITS2 (ITS), nuclear large subunit rDNA (28S), nuclear small subunit rDNA (18S), translation elongation factor 1-α (tef1) gene, and RNA polymerase II second-largest subunit (rpb2) revealed one new species Rutola kunmingensis and a new collection of Torula sundara. Rutola kunmingensis is characterized by black, powdery colonies, micronematous, creeping, reticular conidiophores bearing inconspicuous, monoblastic conidiogenous loci, and multi-septate, catenulate, verruculose, brown conidia. The conidiophores and conidia of each genus in Torulaceae are mapped onto the phylogenetic tree and the generic demarcations of this family are discussed and the significant divergence of ITS, 18S, 28S, rpb2, and tef1 sequences in Torulaceae is also discussed. Full article

This study was designed to determine the fragmentation of sub-lakes in winter and its effects on wintering waterbirds in Poyang Lake. Poyang Lake becomes fragmented in winter, which forms many seasonal sub-lakes every year, and have different environmental characteristics. These sub-lakes significantly impact winter bird habitats and result in susceptibility to various changes, because birds have different distribution responses. A total of 24 sub-lakes were surveyed from one to five vantage points using point count methods in each sub-lake with binoculars, monocular, and a spotting scope for four consecutive winter seasons. The multi-site dissimilarity Sorensen index measures overlapped between two populations, and the R software “iNEXT” package was used to evaluate the sample coverage test of the study area. We observed 58 wintering waterbird species belonging to 9 orders and 15 families from 2016 to 2020. Spearman correlation analysis showed that the species richness of wintering waterbirds was significantly positively correlated with the sub-lake areas and associated with the richness of habitat type. The WNODF analyses were considerably correlated for sites of waterbirds, mainly with the abundance of forage and conservation of habitat form. The outcomes of this study showed that Maying Lake has the highest local beta diversity, whereas Dacha Lake has the lowest local beta diversity contribution (0.007). This study’s findings demonstrate Poyang Lake’s role in waterbird the habitat suitability of waterbirds, especially for foraging and conservation. Full article

It is essential to protect and preserve biodiversity, especially in habitats in which natural resources are scarce. The differing flora and vegetation distribution on the broad, arid landscape at the Crown Prince Mohammed Bin Salman Nature Reserve has yet to be investigated. Based on GPS coordination and the transitional zone of plant communities, 48 symmetric plots of 50 × 50 m² were distributed evenly over six elevations. In this study, we recorded 70 species in 33 families and elucidated floristic traits correlated with elevation. High species richness was recorded for the families Fabaceae, Poaceae, Asteraceae, and Chenopodiaceae. High numbers of chamaephyte and phanerophyte species were observed. In the chorotype, the mono-regional component contained 47% of the species, the bi-regional component 35.7%, and multi-regional and worldwide species comprised 10% and 7%, respectively. This study noted the growth habits of 23 herbs, 15 shrubs, 10 trees, and a single species of grass, vine, climber, and mistletoe. Diversity indices, indicator species, dominant plant communities, and soil profiles were compared for the defined zones of elevation. Alpha and beta diversity were high at elevations of ≥1000, 800, and ≤100 ma.s.l., compared to elevations of 600 m, 400 m, and 200 m. The highest species richness and species turnover were recorded at elevations of ≥1000, 800, and ≤100 m, while species evenness was greater at elevations of 600, 400, and 200 m. Vegetation analyses and indicator species (based on relative abundance) showed species variation with elevation. Species domination was influenced by physical soil structure and soil chemistry. Microclimates, including temperature and relative humidity variations, were found to be a significant driver in the ecosystem, resulting in varying plant diversity and species distribution at different elevations. Through canonical correspondence analysis (CCA), we used an autocorrelation of elevations, plant species, and soil properties to identify three phytogeographic categories that were presumed to be a proxy of microclimate change: Category I: elevations 1000 m and 800 m, including Retama raetam, Zilla Spinosa, and Vachellia gerrardii linked with sandy soil; Category II: elevations 600 m and 400 m, including species Haloxylon salicornicum, Rhazya stricta, and Leptadenia pyrotechnica linked with enriched soils containing CaCO₃ and HCO₃ and having a clay texture; and Category III: elevations 200 m and 100 m, including Zygophyllum coccineum, Tamarix nilotica, and Hyphaene thebaica, which thrived in salinity and silt soils. The spatial vegetation patterns of the xeric environment and its transition zones in Prince Mohammed Bin Salman Nature Reserve were also documented. It is recommended that microclimate effects on species nominated for vegetation restoration or afforestation be considered for the optimal management of this important nature reserve. Full article

The family Phaeosphaeriaceae is a diverse group of ascomycetous fungi that are commonly found in terrestrial habitats worldwide. In recent years, there has been increasing interest in the biodiversity of Phaeosphaeriaceae in China, particularly in Sichuan Province, which has not been fully explored for its high fungal diversity. In our study, we conducted extensive surveys in Sichuan Province to identify and describe new species of Ascomycota with diverse habitats. Here, we present a taxonomic revision of Phaeosphaeriaceae with taxonomic novelties from terrestrial habitats in Sichuan Province based on a multi-gene phylogenetic approach. Our study focuses on the description of four new species of Phaeosphaeriaceae, representing novel additions to the diversity of this fungal family. Using a combination of morphological and molecular data, we provide detailed descriptions of the new taxa and their placement within the family. Additionally, we discuss the phylogenetic relationships of these new taxa with other members of Phaeosphaeriaceae, providing insights into the correct taxonomic classification of the family. Our taxonomic revision contributes to understanding fungal diversity in China and provides a foundation for future studies investigating the taxonomy and ecological roles of Phaeosphaeriaceae fungi. Furthermore, our multi-gene phylogenetic approach provides increased resolution and accuracy in the delimitation of species boundaries within the family. Our study highlights the importance of continued exploration and taxonomic revision in order to fully understand the diversity and distribution of fungal species in China and beyond. New species: Paraloratospora sichuanensis, Phaeosphaeria chengduensis, P. sichuanensis, and Septoriella shoemakeri. New combinations: Paraloratospora breonadiae, P. fructigena, Septoriella ammophilicola, S. asparagicola, S. festucae, S. luzulae, and S. verrucispora. New names: Septoriella paradactylidis, and S. neomuriformis. Full article

Torula is an asexual and hyphomycetous genus in the family Torulaceae. Torula species are generally saprophytic. They have a worldwide distribution and abound in humid or freshwater habitats. In order to better understand this genus, we carried out several field collections from Sichuan, China. As a result, we obtained nine Torula isolates from dead woody substrates in terrestrial and freshwater habitats. Based on a biphasic approach of morphological examination and multi-locus phylogenetic analyses (ITS, SSU, LSU, TEF, RPB2), these collections were identified as belonging to seven Torula species. Four of them were new species (Torula chinensis, T. longiconidiophora, T. sichuanensis and T. submersa), and the other three belonged to existing species, though one was found for the first time in China (T. masonii). Morphological and updated phylogenetic delamination of the new discoveries is also discussed. This study provides further insights into our understanding of wood-based Torula species in China. Full article

The Snezhnaya (=Snow) Cave System (depth −1760 m; total length 40.8 km), located in the West Caucasus, is inhabited by distinctly troglomorphic collembolan species from several families. Two new species of the family Arrhopalitidae occur in the deep parts of the system. Both are highly morphologically specialized; however, they evolved into different troglobiont life forms. Arrhopalites profundus sp. nov. with extremely long claws, lamellate mucro, and an enlarged sensory organ of third antennal segment lives exclusively in hygropetric and epineustonic habitats, whereas Pygmarrhopalites rystsovi sp. nov., with greatly elongated and multi-subsegmentated antennae and long legs, prefers open terrestrial spaces. The troglomorphy, as well as ecological life forms of the obligate cave-dwelling Arrhopalitidae, in general, are discussed and classified as neustonic-hygropetric, atmobiont, intrasubstrate, and intermediate troglomorphs. Full article

The genus Exophiala is an anamorphic ascomycete fungus in the family Herpotrichiellaceae of the order Chaetothyriales. Exophiala species have been classified as polymorphic black yeast-like fungi. Prior to this study, 63 species had been validated, published, and accepted into this genus. Exophiala species are known to be distributed worldwide and have been isolated in various habitats around the world. Several Exophiala species have been identified as potential agents of human and animal mycoses. However, in some studies, Exophiala species have been used in agriculture and biotechnological applications. Here, we provide a brief review of the diversity, distribution, and taxonomy of Exophiala through an overview of the recently published literature. Moreover, four new Exophiala species were isolated from rocks that were collected from natural forests located in northern Thailand. Herein, we introduce these species as E. lamphunensis, E. lapidea, E. saxicola, and E. siamensis. The identification of these species was based on a combination of morphological characteristics and molecular analyses. Multi-gene phylogenetic analyses of a combination of the internal transcribed spacer (ITS) and small subunit (nrSSU) of ribosomal DNA, along with the translation elongation factor (tef), partial β-tubulin (tub), and actin (act) genes support that these four new species are distinct from previously known species of Exophiala. A full description, illustrations, and a phylogenetic tree showing the position of four new species are provided. Full article

Taxonomical research on siphonophores is lacking despite their high biodiversity. We collected siphonophores in Jeju and the southern coasts of Korea and conducted morphological redescriptions using multi-focus stacked digital images. As a result, we revealed eight unrecorded siphonophores (Abyla haeckeli, Ceratocymba leuckartii, Bassia bassensis, Dimophyes arctica, Lensia subtilis, Lensia subtiloides, Muggiaea atlantica, and Nanomia bijuga). Six genera, excluding Muggiaea, were reported for the first time in Korean waters, and subfamily Abylinae, to which Abyla haeckeli and Ceratocymba leuckartii belong, was also first recorded in Korea. The distributions and habitats of these species were summarized, with most of the species having cosmopolitan distributions but variations in individual size depending on environmental conditions. Phylogenetic analysis based on mtCOI was conducted for each family. Finally, we updated the species list of siphonophores in Korean waters to include 3 suborders, 5 families, 3 subfamilies, 14 genera, and 21 species. Our findings constitute baseline data for further research on Korean siphonophores. Full article

Mangroves have been recognized worldwide as crucial nursery areas for fish larvae and juveniles. Although they are critical for managing coastal fish stocks, information about larval fish communities in African island mangroves is scarce and these potential nursery areas in São Tomé Island have remained understudied. Fish larvae were collected over four weeks from October to November 2020 using light traps, passive plankton tows and seine nets in a multi-habitat approach. To overcome species identification constraints, both morphology and molecular analysis were considered. A total of 4 010 larvae were caught across all methods belonging to 16 families or 26 species. A few species dominated the ichthyoplankton community and the most abundant families were Cichlidae—especially the invasive Oreochromis mossambicus (47%)—and Gobiidae (43%), constituted by 7 taxa. The remaining 14 families only accounted for about 10% of total larvae captured. Three new species were recorded for the first time in the island mangroves and another three species were documented for the first time in the São Tomé Island. Taxa composition and richness varied considerably between sampling techniques. The highest taxa richness and diversity were recorded in the Malanza mangrove (25 species) while Praia das Conchas (9 species) was not able to sustain similar levels of biodiversity. Differences on fish larvae composition were found within the studied mangroves, depicting a strong influence of habitat type and a relative position within each system. These community composition patterns were marginally influenced by local environmental conditions such as temperature and dissolved oxygen. Overall, a total of eleven taxa have commercial interest and their presence as juveniles and larvae in São Tomé mangroves reinforces the need for conservation of these ecosystems and shows direct implications for the sustainability of the local fisheries. Full article

The preservation and restoration of habitats and ecological connectivity inside cities is crucial to ensure wildlife can find suitable areas to forage, rest and reproduce, as well as to disperse, thereby allowing metapopulation functioning. In this study, we used data collected by a citizen science program between 2016 and 2018 to determine which families of pollinators were the most frequently observed in Seoul and with which habitats pollinators had the highest affinities. Using species distribution modeling and landscape graph approaches, we located the main habitats and corridors to reinforce connectivity for six pollinator families. Finally, we identified habitats and corridors where conservation actions should be prioritized. In total, 178 species belonging to 128 genera and 60 families were observed. Hymenopterans were the most recorded, followed by dipterans and lepidopterans. The most suitable habitats for pollinators were constituted of public parks, university campuses, and Cultural Heritage sites. In a dense city like Seoul, most of the conservation corridors are located in built-up areas. Innovative urban planning and architecture are therefore required as well as the setting-up of ecological management practices to lead to a more sustainable urbanism for pollinators and wildlife in general. Full article