Search Results (733)

Spontaneous fermentation processes can promote uncontrolled microbial growth and increase the risk of foodborne contamination, making the characterization of artisanal beverages essential for consumer safety. This study investigated the microbial composition of quinoa-based rejuvelac, a homemade fermented drink often perceived as a functional food, with the objective of identifying potential microbiological hazards associated with its preparation. High-throughput sequencing of the 16S rRNA V3–V4 region was combined with shotgun metagenomics to profile bacterial communities and recover metagenome-assembled genomes. The analysis revealed a strong dominance of Pseudomonadales, mainly Pseudomonas, Acinetobacter, Enterobacter and Burkholderiales, while lactic acid bacteria typically responsible for stable and safe fermentations were not detected. Shotgun metagenomics recovered medium- to high-quality genomes from Burkholderiaceae and Clostridiales, supporting the overrepresentation of non-beneficial taxa and indicating deviations from expected fermentation microbiota. These results show that the spontaneous preparation of rejuvelac may favor bacterial groups associated with environmental contamination rather than fermentative pathways, underscoring the importance of hygiene practices, controlled starter cultures and monitoring strategies to mitigate microbiological risk. The study highlights the need for improved safety standards in artisanal fermented foods to prevent unintended microbial contamination and protect consumers. Full article

Karst water systems are highly vulnerable to land use pressures, requiring integrated assessments to support conservation and management. This study evaluated the physicochemical, microbiological, and pesticide-related water quality in the Environmental Protection Area Nascentes do Rio Vermelho (APANRV), a karst conservation unit in the Brazilian Cerrado. Sixteen sampling sites (rivers, springs, and cave waters) were monitored during the dry (May 2024) and rainy (October 2024) seasons. Analyses included nutrients, major ions, Escherichia coli, and a broad spectrum of pesticides. The results showed marked spatial and seasonal variability, with elevated hardness and conductivity in karst areas due to carbonate dissolution. Nitrate and total phosphorus reached peak values of 13.59 and 0.132 mg L⁻¹, respectively, indicating localized nutrient enrichment. E. coli concentrations reached ≥2419.6 MPN 100 mL⁻¹, exceeding regulatory limits, particularly during the rainy season at recreational cave sites. Pesticides were detected in both seasons, with 11 compounds in the dry season and 8 in the rainy season, including atrazine degradation products, and maximum quantified concentrations up to 1.8 µg L⁻¹ (acephate). These findings highlight the combined influence of geology, seasonality, and land use on karst water quality and reinforce the need for continuous monitoring and targeted management strategies. Full article

Invasive candidiasis (IC) remains a significant cause of morbidity and mortality among critically ill, hematologic, and neonatal patients worldwide. Rapid and accurate diagnosis is essential to guide timely antifungal therapy and improve outcomes. Among available diagnostic tools, 1,3-β-D-glucan (BDG), a polysaccharide component of the fungal cell wall, has emerged as a key biomarker. BDG assays allow for early detection of probable IC, often preceding positive blood cultures, and offer prognostic information based on serial measurements. Species-specific differences in Candida cell wall composition influence BDG release and diagnostic sensitivity. Candida albicans generally correlates with high BDG levels, whereas Nakaseomyces glabrata, Candida parapsilosis, and Candida auris exhibit variable or lower glucan exposure, limiting assay sensitivity. BDG performance is affected by patient-specific factors, such as prior surgery, transfusions, or coexisting bacterial infections, which may lead to false-positive results. Molecular techniques, including PCR-based assays, provide complementary diagnostic accuracy and species identification, and their combination with BDG testing enhances sensitivity up to 90%. Serial BDG monitoring supports risk stratification and treatment response assessment, with persistent elevations predicting worse outcomes. In neonatal and pediatric populations, optimal cut-off values remain under investigation, highlighting the need for integration with clinical and microbiological data. Overall, BDG represents a valuable adjunct in a multimodal diagnostic workflow, providing both diagnostic and prognostic insights in invasive candidiasis management. Full article

The food packaging industry requires sustainable solutions to reduce plastic waste and replace synthetic additives. This study addresses the need for scalable methods to transform conventional polyethylene terephthalate (PET) packaging into active food preservation systems using natural biocides. Commercial PET packaging was surface-activated using industrial-scale corona treatment, followed by coating with natural biocides—carvacrol (CV) and trans-cinnamaldehyde (tCN). The resulting active packaging materials (PET-CV and PET-tCN) were characterized using XRD, FTIR, SEM, AFM, and desorption kinetics. Packaging properties including mechanical strength, oxygen barrier, antioxidant (DPPH), and antibacterial activity (against S. aureus and E. coli) were evaluated. Real-food preservation tests were conducted using fresh minced pork (4 °C, 6 days) and table olives (23 °C, 21 days), monitoring microbiological (TVC), colorimetric (CIE L*a*b*), and pH changes. Corona treatment successfully anchored both biocides through physical adsorption, with tCN exhibiting stronger surface interaction (desorption energy: 128.0 kJ/mol). Both coatings significantly improved oxygen barrier properties (61% reduction for PET-CV, 80% for PET-tCN). PET-tCN demonstrated superior antibacterial activity (inhibition zones: 15.0 mm against E. coli). In pork preservation, PET-tCN achieved a 2-log reduction in TVC, maintained meat redness (a*: 12.80 vs. 5.10 for control), and stabilized pH. For olives, PET-tCN reduced TVC by 2.35 log cycles and preserved green color. This corona-assisted coating approach, demonstrated here at laboratory scale, successfully transforms inert PET into multi-functional active packaging with potent antimicrobial, antioxidant, and barrier properties, significantly extending food shelf-life and offering a sustainable solution for reducing food waste. Full article

Metagenomic and targeted next-generation sequencing (NGS) technologies are rapidly transforming diagnosis and management for infectious diseases. This review comprehensively examines the current applications of metagenomic NGS (mNGS) and targeted NGS (tNGS) in clinical microbiology, highlighting their roles in pathogen detection, antimicrobial resistance profiling, virulence characterization, and outbreak investigation—particularly in complex cases such as pneumonia, critical illness with pulmonary infections, and pediatric acute respiratory illnesses. We discuss the diagnostic performance, advantages, and limitations of these approaches, including challenges related to sensitivity, specificity, standardization, bioinformatic complexity, and cost-effectiveness. Furthermore, we explore emerging opportunities for integrating NGS-based surveillance with public health strategies, such as wastewater epidemiology, to monitor healthcare-associated infections (HAIs) and antimicrobial resistance (AMR) at the population level. Finally, we outline key steps needed to translate these powerful genomic tools from research settings into routine clinical and public health practice. Full article

Background/Objectives: Intravitreal injections (IVIs) are increasingly performed in outpatient settings, raising concerns regarding how to guarantee operating-theatre-level environmental safety. Mobile laminar airflow (LAF) units may create an ultraclean instrument field, but microbiological evidence from real-world IVI clinics is limited. Methods: We performed environmental monitoring during three IVI sessions, each including approximately 20 injections per session, in an outpatient procedure room equipped with a mobile LAF device (Operio Toul Mobile). Airborne microbial contamination was measured with a SAS Super 100 impactor (1 m³ per sample) at two locations, the procedure-room air and the LAF field, across seven predefined time points (T₋₁to T₅). Surface contamination of the instrument-covering drape was assessed at mid- and end-session using 24 cm² contact plates on four culture media. Colonies were expressed as CFU/m³ or CFU/24 cm² and analysed using a two-way repeated-measures ANOVA (location × time), with Holm-adjusted within-session paired post hoc comparisons at each time point. Results: During LAF operation (T₀–T₄), mean airborne load was 89.8 ± 10.8 CFU/m³ in room air versus 10.9 ± 4.6 CFU/m³ under LAF, corresponding to an 87.9% mean reduction (Holm-adjusted p < 0.01). At T₋₁ and T₅ (LAF off), counts were not significantly different between locations. Airborne microbial species consisted mainly of skin/oral commensals; no obligate pathogens were detected. All 24 drape samples showed 0 CFU. Conclusions: In this high-throughput outpatient IVI clinic, the mobile LAF device maintained a stable ultraclean microenvironment at the instrument field despite moderate background room contamination, supporting its use as an adjunct to standard aseptic measures, without the need to change the covering drape during the session. Full article

Background: Staphylococcal bloodstream infections (BSIs) and infective endocarditis (IE) are associated with high morbidity and mortality. Among the different antimicrobial combination strategies proposed to enhance antibacterial activity, the association of daptomycin and ceftobiprole may be valuable. The aim of this study was to assess the PK/PD target attainment, safety, and clinical outcomes of such combination therapy for BSI and IE treatment. Methods: This retrospective monocentric study included adult patients with targeted treatment of staphylococcal BSI or IE with daptomycin plus continuous infusion (CI) ceftobiprole. Therapeutic drug monitoring (TDM) was performed for both agents, including Bayesian estimation of daptomycin 24 h area under the concentration–time curve (AUC_24h). PK/PD targets were defined as daptomycin AUC_24h/MIC ≥ 666 and ≥1081, and ceftobiprole steady-state concentration/MIC ≥ 4. Dose adjustments, safety, microbiological response, and clinical outcomes were assessed. Results: Twenty-three patients (11 BSI and 12 IE) were included. Methicillin-resistant Staphylococci were identified in 91.3% of cases. At first TDM assessment, daptomycin PK/PD targets were achieved in all patients, while ceftobiprole targets were achieved in 91.6% of BSI cases and in all IE cases. PK-/PD-guided dose de-escalation was frequently feasible. Clinical cure was observed in 77.8% of evaluable patients with BSI and in 91.7% with IE. Creatine phosphokinase elevations occurred in two patients, while hyper-eosinophilia was observed in 69.6% and was manageable with monitoring. Conclusions: Targeted therapy with daptomycin plus CI ceftobiprole achieved high PK/PD target attainment and favorable clinical outcomes in staphylococcal BSI and IE. TDM and model-informed precision dosing may enable dose optimization and may improve the balance between efficacy and safety. Multicenter studies are warranted. Full article

Fresh bluefin tuna is highly susceptible to quality deterioration during refrigerated storage due to lipid oxidation and microbial activity, creating a need for effective clean-label preservation strategies. This study evaluated the efficacy of natural astaxanthin as an antioxidant treatment to improve the refrigerated stability of fresh bluefin tuna (Thunnus thynnus) fillets stored under vacuum packaging (VP) or modified atmosphere packaging (MAP; 70% N₂/30% CO₂). Tuna fillets were treated by short immersion in astaxanthin solutions (10–20 mg/L), applied alone or in combination with other natural antioxidants, including ascorbic acid, and compared with a rosemary–ascorbic acid reference system. Selected treatments incorporated microencapsulated astaxanthin to enhance antioxidant stability. Quality changes were monitored during refrigerated storage (4 °C) through sensory evaluation (appearance, colour, and odour), total volatile basic nitrogen (TVBN), histamine determination, and microbiological analyses. Astaxanthin-treated samples exhibited improved colour stability, delayed sensory deterioration, and significantly lower TVBN accumulation compared with the rosemary–ascorbic acid reference treatment. Under MAP conditions, astaxanthin reduced TVBN values by approximately 20% after 12 days of storage, while microencapsulated astaxanthin combined with ascorbic acid achieved reductions of up to 30% under vacuum packaging. All selected treatments complied with regulatory microbiological and histamine limits throughout storage. These results indicate that natural astaxanthin, particularly in microencapsulated formulations, can enhance quality stability of fresh bluefin tuna when applied in combination with oxygen-limiting packaging systems under controlled refrigerated conditions. The findings provide a scientific basis for further investigation of astaxanthin-based preservation strategies in high-value seafood products. Full article

The study evaluated the drinking water quality of Rouxville (RX) in Mohokare Local Municipality in the Free State, using chemical, physical, and microbiological parameters in comparison with South African National Standard 241 (SANS 241:2015). Drinking water samples were collected monthly from five sample sites, including the water treatment plant (WTP) and four end-user points, over a period of three years (2021–2023). Microbiological parameters revealed persistent non-compliance, with total coliforms and Escherichia coli (E. coli) frequently exceeding recommended limits by SANS 241 at multiple sites. The highest total coliform concentration of 201 CFU was recorded at the Rouxville Water Treatment Plant during the third year (2023) of sampling, while E. coli reached a maximum of 11 CFU at an end-user point, indicating the presence of possible pathogens in the water system. Colour exceeded the recommended limit (15 Pt-Co mg/L) at all sampling sites, with the highest value of 133 Pt-Co mg/L recorded at Rolelethunya Library. Chemical parameters mostly complied with SANS 241 limits, elevated values of total alkalinity and aluminium were observed at certain sites, particularly during the third year (2023) of sampling. The Canadian Council of Ministers of the Environment Water Quality Index (CCME-WQI) was also used to determine the overall water quality of the sample sites. The findings revealed that several sample sites had non-compliant parameters. The CCME-WQI revealed that the drinking water quality of Rouxville was either in the marginal or fair category, indicating that the water quality may be occasionally or frequently threatened, posing public health risks. These findings highlight the urgent need to ensure regular maintenance of WTP and ensuring continuous microbial monitoring. Full article

The antimicrobial effect of Chios mastic gum essential oil (mastic EO) was evaluated in vitro in a variety of spoilage and pathogenic bacteria and yeast strains isolated from spoiled cheeses with concentrations ranging from 0.006 to 2% (Minimum Inhibitory Concentration (MIC)) and in situ (cheese slices). The mastic EO (2%) was incorporated in sodium alginate edible gel films (Mastic Edible Films (MEFs)), and then the films were applied between the cheese slices that had been previously inoculated with a cocktail of three strains of Listeria monocytogenes (on both sides of the slices) and subjected or not to high-pressure processing (HPP). Cheese samples were vacuum-packaged and cold stored (4 °C), and microbiological, pH and organoleptic (in pathogen-free slices) analyses were employed, while Fourier Transform Infrared (FTIR) spectroscopy was applied as a rapid technique to monitor the biochemical changes present on the slices. Samples without MEF, without the pathogen and with or without HPP were employed as controls. Results showed that the MIC of the mastic EO varied from 0.01% to 1.8% depending on the species and/or strains. Pathogen’s growth was suppressed by HPP, MEF or their combination, which showed the highest efficacy. These results could provide useful data to support risk assessment studies on ready-to-eat foods. Finally, FTIR implementation with data analytics was found to be satisfactory, indicating FTIR’s potential as a reliable information source for cheese quality control. Full article

Compost-based biostimulants (CBB) have emerged as a promising tool in sustainable agriculture, offering an eco-friendly approach to improving soil health, crop productivity, and environmental resilience. Derived from the controlled biodegradation of organic waste, CBB contains a diverse array of beneficial microorganisms, humic substances, and bioactive compounds that act synergistically to stimulate plant growth and soil biological activity. Mechanistically, CBB enhances nutrient acquisition by increasing plant-available nitrogen and phosphate solubility, promoting root development through phytohormone synthesis, and improving stress tolerance by modulating plant defense pathways and antioxidant activity. Additionally, their application enhances soil structure, microbial diversity, and carbon sequestration, making them integral to climate-smart agriculture. Despite their growing relevance, several challenges impede the widespread adoption of CBB. Variability in compost quality, lack of standardized production protocols, limited field-scale validation, and inconsistent regulatory frameworks hinder reproducibility and commercialization. Addressing these gaps requires interdisciplinary research that integrates microbiology, biochemistry, agronomy, and data science to better understand how microbial metabolites interact and optimize formulation strategies. Future research should prioritize the standardization of composting methods, long-term multi-crop field evaluations, and integration with precision agriculture tools for real-time soil monitoring. Policy harmonization, quality assurance frameworks, and farmer education are also vital for ensuring safe and effective use of CBB. Full article

The sale of raw milk via vending machines represents a well-established distribution model in many European countries, including Switzerland. As part of this study, data on the microbiological quality of raw milk sold via vending machines in Switzerland were collected. A total of 124 raw milk samples from 124 raw milk vending machines across Switzerland were analysed. In addition to standard hygiene parameters (TVC and E. coli), the scope of the investigation particularly included foodborne pathogens as well as methicillin-resistant Staphylococcus aureus (MRSA) and extended-spectrum β-lactamase (ESBL)-producing Enterobacterales. Isolates were further characterised by whole-genome sequencing. Shiga toxin-producing Escherichia coli (STEC) were detected in 3.2%, Staphylococcus aureus was detected in 12.1%, Listeria monocytogenes was detected in 2.4%, Campylobacter spp. were detected in 1.6%, Yersinia enterocolitica was detected in 29.8%, and Salmonella spp. were detected in 0% of the samples. MRSA and ESBL-producing Enterobacterales were each detected in 0.8% of samples. The results highlight the potential risk of foodborne infections associated with the consumption of untreated raw milk, as well as hygiene deficiencies linked to several raw milk vending machines. Based on the generated data, the importance of the requested heat treatment of raw milk in Switzerland is clearly underscored. Furthermore, more precise and binding guidelines for self-monitoring and the management of raw milk vending machines appear necessary. Full article

Precise water quality forecasting is vital for sustainable resource management and public health, especially in semi-arid environments. This study investigates the predictive capabilities of ten Machine Learning (ML) algorithms using a dataset of 308 drinking water samples collected from various districts in Şanlıurfa Province, Türkiye. We evaluated ten predictive models, including Support Vector Regressor (SVR) and Extreme Gradient Boosting (XGBoost), both integrated with dimensionality reduction and hyperparameter optimization. Nineteen physicochemical and microbiological parameters—Temperature, chlorine (Cl⁻), pH, Electrical Conductivity (EC), Total Dissolved Solids (TDS), nitrite (NO₂⁻), nitrate (NO₃⁻), ammonium (NH₄⁺), sulfate (SO₄²⁻), Free Chlorine (Cl₂), calcium (Ca²⁺), magnesium (Mg²⁺), sodium (Na⁺), potassium (K⁺), fluoride (F⁻), trihalomethanes (THMs), Escherichia coli, Enterococci, Total Coliform—were used as input features. The dataset was split into training (75%) and testing (25%) subsets, and model performance was assessed through 10-fold cross-validation and hold-out testing procedures. To improve model generalization and mitigate the effects of class imbalance, we implemented the Adaptive Synthetic Sampling (ADASYN) technique. ML algorithms were evaluated using standard regression metrics: Mean Absolute Error (MAE), Mean Squared Error (MSE), Root Mean Squared Error (RMSE), and the Coefficient of Determination (R²). The LSTM model optimized using Randomized Search outperformed the SVR and XGBoost models, demonstrating the highest accuracy and generalization capability, as evidenced by the superior R² value of 0.999 following ADASYN balancing and the lowest RMSE (1.206). These findings underscore the effectiveness of the LSTM framework in modeling the complex variance of the Weighted Arithmetic Water Quality Index (WAWQI). The findings of this study are expected to support future water quality monitoring strategies, inform policy development, and contribute to sustainable water resource management in arid and semi-arid regions. Full article

Long-term stability of multienzyme protein systems is governed by preservation of conformational integrity and resistance to thermally induced structural destabilization. This study evaluated bovine pancreatin (BP) obtained by conventional extraction (CM) and ultrasound-assisted extraction (UAM) during 0–930 days of storage at 10–40 °C. Amylolytic (AA), proteolytic (PA), and lipolytic activities (LA), representing the functional enzymatic activity (EA) of the multienzyme protein system, were monitored to characterize degradation kinetics and activity loss associated with conformational destabilization. After 930 days at 20 ± 1 °C, UAM retained 76% of initial AA compared with 58% for CM, corresponding to a 31% higher residual activity in UAM. LA demonstrated comparatively high stability in both preparations (~84% retention), whereas PA exhibited delayed degradation and significantly higher residual values in UAM samples. Two-way ANOVA confirmed significant effects of extraction method, storage duration, and their interaction (p < 0.001), indicating method-dependent kinetic behavior. Elevated temperatures (35–40 °C) accelerated inactivation, consistent with increased molecular mobility and reduced conformational stability. The smoother degradation trajectories and lower apparent inactivation rates observed in UAM preparations suggest kinetic stabilization, potentially associated with improved conformational preservation and reduced extraction-induced structural stress. Both preparations complied with pharmacopoeial microbiological limits. These findings support the hypothesis that UAM enhances long-term functional stability of complex multienzyme systems through mechanisms related to conformational resilience. Full article

This study evaluated the effect of water vapor generated by fresh-cut mango (Mangifera indica) on the release of β-carotene from β-cyclodextrin complexes (β-C:β-CD) under stored Modified Atmosphere Packaging (MAP) and to demonstrate β-carotene stabilization and passive–active packaging behavior under MAP conditions. Containers with fresh-cut mangoes, with and without MAP (4% O₂, 6% CO₂, 90% N₂), were prepared for monitoring over 6 days at 4 °C. β-C:β-CD complexes were incorporated into the lids of containers. The physicochemical, relative humidity, antioxidant, erythroprotective, microbiological, and biofunctional qualities of freshly cut mangoes during storage were analyzed. Active metabolic respiration of plant tissue led to a progressive decrease in O₂ and an increase in CO₂ in sealed containers, a phenomenon intensified by cutting, high humidity, and the system’s limited gas permeability. Application of MAP effectively modulated this microenvironment, reducing respiration rate, water loss, acidification, and the degradation of bioactive compounds. Compared to treatments without MAP, mangoes stored under modified atmosphere showed greater color stability, a slower rate of change in pH and titratable acidity, less loss of antioxidant activity and phenolic compounds, and significant preservation of erythroprotective capacity. Furthermore, MAP maintained microbial counts within the limits established by current regulations until the sixth day of storage. The encapsulation of β-C in β-CD effectively protected its bioactivity from oxidation, especially under MAP, although its release into the food matrix was limited, suggesting a predominantly passive behavior of the active packaging system. Overall, the results demonstrate that the combination of MAP constitutes a promising strategy for extending the shelf life and biofunctional stability of fresh-cut mangoes and β-C into the complex. Full article